rna4092, rna4092 (mRNA) Nannochloropsis gaditana

Overview
Namerna4092
Unique Namerna4092
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length288
Alignment locationCM002462.1:830834..831662 +

Link to JBrowse

Properties
Property NameValue
Productheat shock protein hsp20
Orig transcript idgnl|cribi|Naga_100001g20.8271.mrna
Orig protein idgnl|cribi|Naga_100001g20.8271
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:830834..831662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g20gene3938Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4092rna4092-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26760.1cds4082Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4092 ID=rna4092|Name=rna4092|organism=Nannochloropsis gaditana|type=mRNA|length=288bp
ATGATCTCATGTGAAGCGGACAACACGACATGCTCTCATTGTTGTATAGA
ATTCACTGTCCATGTATTTGCTACATTCGCGACAGAGGAGACTGATGGCT
TTCCCCAGACAGCCCATAAGGGGCGCGGTATCAACTCACTGAGCCACACC
GGAAATAATTGTTGTCTGACTTGTGTAGTACAGACAGAGGCTCTTGGTTC
GATATTTCCAACCCCTACCCTCACCTATCCTCTTTTTAATACATGTGTAC
ATGCATCATACCAAAAAGAACTGTTGCTTGATAGCTGA
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protein sequence of rna4092

>rna4092-protein ID=rna4092-protein|Name=rna4092|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MFSQAFTPRKKPQVNMMRQSCRSLGHAGRAVTSAYSYRTTQPALPVRCLS
SRATRSVAPRGSGNRHGQVVSRGPGGPPWANLGRIFDDMGMEVFNDPFFR
PFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDG
VLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHL
EDGVLTVKVKKGEDSKPQDIPIK
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mRNA from alignment at CM002462.1:830834..831662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4092 ID=rna4092|Name=rna4092|organism=Nannochloropsis gaditana|type=mRNA|length=829bp|location=Sequence derived from alignment at CM002462.1:830834..831662+ (Nannochloropsis gaditana)
ATGTTTTCCCAGGCTTTCACGCCCCGTAACATTCCATGGAAAACAAACAA
AAGAAGGCTTATTCAACATCAACCTCCTGCCGTTGTACATGTCCTTTCCA
CAACTTCTGCAATATCTGATCTTGTTCAGATACATCTCCGCTCCACACCC
ATGGTGACAATATCACATCTGCCCTATTACAGGAAAGAAACCACAAGTCA
ACATGATGCGCCAATCGTGCCGCTCACTTGGCCATGCTGGCCGCGCAGTT
ACATCTGCTTATTCTTATCGAACGACTCAGCCTGCTCTTCCGGTACGCTG
TCTCAGCAGTCGAGCCACACGCTCCGTAGCTCCGCGGGGCAGTGGGAACA
GGCATGGACAGGTTGTGTCTCGTGGACCTGGCGGCCCTCCATGGGCCAAT
TTAGGTCGAATTTTTGATGACATGGGCATGGAGGTGTTCAATGACCCTTT
CTTTCGTCCCTTCTTTGCTCGCGGCCCTGGAGGGGCAATGGAAGCGGCCG
AGGTTGCTATGGGCTTAGACATTGcagagacggagaaggagtaTATTGTA
AAGGCAGAACTACCAGGAGTGAAAAAAGAAGATGTGAAAGTTACCTTCCA
TGACGGAGTTCTCAATATCTCCGCGGAGCGTAAGCAGGAAGCAGCCGGCG
AGGATGAGCATCATCGTCAACATTATTCTGACTTTGCGTACGGCAAGGTG
TCCCGCTCTTTACGCGTGCCAGACGCGGCCGAGAAGGATCATGTAGACGC
TCATTTGGAGGACGGAGTGCTTACAGTAAAGGTtaagaagggggaggatt
cGAAGCCTCAGGATATCCCTATTAAGTGA
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Coding sequence (CDS) from alignment at CM002462.1:830834..831662+

>rna4092 ID=rna4092|Name=rna4092|organism=Nannochloropsis gaditana|type=CDS|length=1344bp|location=Sequence derived from alignment at CM002462.1:830834..831662+ (Nannochloropsis gaditana)
ATGTTTTCCCAGGCTTTCACGCCCCGAAAGAAACCACAAGTCAACATGAT
GCGCCAATCGTGCCGCTCACTTGGCCATGCTGGCCGCGCAGTTACATCTG
CTTATTCTTATCGAACGACTCAGCCTGCTCTTCCGGTACGCTGTCTCAGC
AGTCGAGCCACACGCTCCGTAGCTCCGCGGGGCAGTGGGAACAGGCATGG
ACAGGTTGTGTCTCGTGGACCTGGCGGCCCTCCATGGGCCAATTTAGGTC
GAATTTTTGATGACATGGGCATGGAGGTGTTCAATGACCCTTTCTTTCGT
CCCTTCTTTGCTCGCGGCCCTGGAGGGGCAATGGAAGCGGCCGAGGTTGC
TATGGGCTTAGACATTGcagagacggagaaggagtaTATTGTAAAGGCAG
AACTACCAGGAGTGAAAAAAGAAGATGTGAAAGTTACCTTCCATGACGGA
GTTCTCAATATCTCCGCGGAGCGTAAGCAGGAAGCAGCCGGCGAGGATGA
GCATCATCGTCAACATTATTCTGACTTTGCGTACGGCAAGGTGTCCCGCT
CTTTACGCGTGCCAGACGCGGCCGAGAAGGATCATGTAGACGCTCATTTG
GAGGACGGAGTGCTTACAGTAAAGGTtaagaagggggaggattcGAAGCC
TCAGGATATCCCTATTAAGTGAATGTTTTCCCAGGCTTTCACGCCCCGAA
AGAAACCACAAGTCAACATGATGCGCCAATCGTGCCGCTCACTTGGCCAT
GCTGGCCGCGCAGTTACATCTGCTTATTCTTATCGAACGACTCAGCCTGC
TCTTCCGGTACGCTGTCTCAGCAGTCGAGCCACACGCTCCGTAGCTCCGC
GGGGCAGTGGGAACAGGCATGGACAGGTTGTGTCTCGTGGACCTGGCGGC
CCTCCATGGGCCAATTTAGGTCGAATTTTTGATGACATGGGCATGGAGGT
GTTCAATGACCCTTTCTTTCGTCCCTTCTTTGCTCGCGGCCCTGGAGGGG
CAATGGAAGCGGCCGAGGTTGCTATGGGCTTAGACATTGcagagacggag
aaggagtaTATTGTAAAGGCAGAACTACCAGGAGTGAAAAAAGAAGATGT
GAAAGTTACCTTCCATGACGGAGTTCTCAATATCTCCGCGGAGCGTAAGC
AGGAAGCAGCCGGCGAGGATGAGCATCATCGTCAACATTATTCTGACTTT
GCGTACGGCAAGGTGTCCCGCTCTTTACGCGTGCCAGACGCGGCCGAGAA
GGATCATGTAGACGCTCATTTGGAGGACGGAGTGCTTACAGTAAAGGTta
agaagggggaggattcGAAGCCTCAGGATATCCCTATTAAGTGA
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Synonyms
Publications