EWM26760.1, cds4082 (CDS) Nannochloropsis gaditana

Overview
NameEWM26760.1
Unique Namecds4082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:830834..830858 +
Alignment locationCM002462.1:831016..831662 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26760.1
Productheat shock protein hsp20
Orig transcript idgnl|cribi|Naga_100001g20.8271.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:830834..830858 +
CM002462.1supercontigCM002462.1:831016..831662 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR031107HSP20
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|585108848|gb|EWM26760.1| (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 462.996 bits (1190), Expect = 4.718e-165
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MFSQAFTPRKKPQVNMMRQSCRSLGHAGRAVTSAYSYRTTQPALPVRCLSSRATRSVAPRGSGNRHGQVVSRGPGGPPWANLGRIFDDMGMEVFNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            MFSQAFTPRKKPQVNMMRQSCRSLGHAGRAVTSAYSYRTTQPALPVRCLSSRATRSVAPRGSGNRHGQVVSRGPGGPPWANLGRIFDDMGMEVFNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK
Sbjct:    1 MFSQAFTPRKKPQVNMMRQSCRSLGHAGRAVTSAYSYRTTQPALPVRCLSSRATRSVAPRGSGNRHGQVVSRGPGGPPWANLGRIFDDMGMEVFNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|980039113|emb|CUS97536.1| (heat shock protein Hsp20 [Candidatus Chrysopegis kryptomonas])

HSP 1 Score: 101.293 bits (251), Expect = 1.357e-23
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 0
Query:   88 DMGMEVFN---------DPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            D+  E+F+         D FFR F        +  +  +  +DI+ET+ EYIV+AE+PGV K+DVKVT  D VL IS E+KQE   ++E+   H  +  YG  +RS  +P A + D V+A  +DGVLT+K+ K E++K ++I +K
Sbjct:   11 DLATEIFDLQREINKMFDRFFRGF---EEEEEVRISTWSPRVDISETDDEYIVRAEIPGVSKDDVKVTIRDNVLTISGEKKQEKETKNENF--HRIERVYGSFTRSFTLPGAVKVDKVEAKFKDGVLTIKLPKVEEAKTKEIEVK 150          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|825292014|ref|WP_047134497.1| (Hsp20/alpha crystallin family protein [Candidatus Kryptonium thompsoni] >gi|951280920|emb|CUS94089.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|951283899|emb|CUT04627.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|962433769|emb|CUU07710.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|979975929|emb|CUS86020.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|980078870|emb|CUS76560.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|980133341|emb|CUS88672.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|980151450|emb|CUS88090.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|980173965|emb|CUT02074.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni] >gi|980231924|emb|CUS82850.1| heat shock protein Hsp20 [Candidatus Kryptonium thompsoni])

HSP 1 Score: 101.293 bits (251), Expect = 1.394e-23
Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 0
Query:   88 DMGMEVFN---------DPFFRPFFARGPGGAMEAAEVAM-----GLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQ--EAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            D+  E+F+         D FFR F         E  E+ M      +DI+ET+ EYIV+AE+PGV K+DVK+T  D +L IS E+KQ  EA GE+ H  +      YG  SRS  +P + + D V+A  +DGVLT+K+ K E++KP++I IK
Sbjct:   11 DLATEIFDLQKEINRMFDRFFRGF---------EDEEIRMISWSPRVDISETDDEYIVRAEIPGVSKDDVKITIKDDILTISGEKKQEKEAKGENFHRIER----VYGSFSRSFALPGSVKVDKVEAKFKDGVLTIKLPKVEEAKPREIEIK 149          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|1117392013|ref|WP_072150049.1| (Hsp20/alpha crystallin family protein [Candidatus Kryptobacter tengchongensis] >gi|951279975|emb|CUS99313.1| HSP20 family protein [Candidatus Kryptobacter tengchongensis] >gi|962437053|emb|CUU06232.1| HSP20 family protein [Candidatus Kryptobacter tengchongensis])

HSP 1 Score: 98.9821 bits (245), Expect = 1.296e-22
Identity = 55/145 (37.93%), Postives = 87/145 (60.00%), Query Frame = 0
Query:   88 DMGMEVFN---------DPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            D+  E+F+         D FFR F        M+ +     +DI+ET+ EYIV+A++PGV K+D+K+T  D VL IS E+KQE   ++E+   H  +  YG  +R+  +P A + D V+A  +DGVLT+K+ K E++K ++I +K
Sbjct:   11 DLATEIFDLQREINRMFDRFFRGFEEEEELKVMKWSP---RVDISETDDEYIVRADVPGVSKDDIKITIKDNVLTISGEKKQEKETKNENF--HRIERVYGSFTRTFTLPGAVKVDKVEARFKDGVLTIKLPKVEEAKAKEIEVK 150          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|1117426050|ref|WP_072151514.1| (Hsp20/alpha crystallin family protein [Candidatus Kryptobacter tengchongensis] >gi|951277990|emb|CUS83436.1| HSP20 family protein [Candidatus Kryptobacter tengchongensis])

HSP 1 Score: 98.5969 bits (244), Expect = 1.605e-22
Identity = 55/145 (37.93%), Postives = 87/145 (60.00%), Query Frame = 0
Query:   88 DMGMEVFN---------DPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            D+  E+F+         D FFR F        M+ +     +DI+ET+ EYIV+A++PGV K+D+K+T  D VL IS E+KQE   ++E+   H  +  YG  +R+  +P A + D V+A  +DGVLT+K+ K E++K ++I +K
Sbjct:   11 DLATEIFDLQREINRMFDRFFRGFEEEEELKMMKWSP---RVDISETDDEYIVRADVPGVSKDDIKITIKDNVLTISGEKKQEKETKNENF--HRIERVYGSFTRTFTLPGAVKVDKVEARFKDGVLTIKLPKVEEAKAKEIEVK 150          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|493465960|ref|WP_006421140.1| (Hsp20/alpha crystallin family protein [delta proteobacterium NaphS2] >gi|300446371|gb|EFK10223.1| Hsp20/alpha crystallin family protein [delta proteobacterium NaphS2])

HSP 1 Score: 98.2117 bits (243), Expect = 2.153e-22
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 0
Query:   78 PWANLGRIFDDMGMEVFNDPFFRPFFARGP-GGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            PW+  G I   + +    D  F  FF   P GG  E +  +  LD++ET KE +V+AEL G+  +++++  HD VL +  ERKQE   ED+    H  + +YG   RSLR+P   E D+VDA  +DG+L +K+KK E    + I IK
Sbjct:    8 PWSRPGDI---VTLRREMDSLFDRFFDWRPFGGGTEVSVWSPALDVSETPKEVLVRAELSGMDPKEIEINLHDNVLTVRGERKQEK--EDKEENYHRVERSYGSFVRSLRLPAEVESDNVDATYKDGILMIKLKKSEKIAQRKIEIK 149          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|1088667590|gb|OHE79031.1| (hypothetical protein A2107_03875 [Verrucomicrobia bacterium GWF2_62_7])

HSP 1 Score: 97.8265 bits (242), Expect = 2.664e-22
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 0
Query:   78 PWANLGRIFDDMGMEVFNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPI 222
            PW+ +  + +++   +F D F     +   G A+     A  LDIAETE E +VK E+PGV + D+ +T HDGVL +  E+K   A ED++ + H  + AYG  SRSL +P+    D + A  +DGVLT+ + K E++KP+ I I
Sbjct:    8 PWSEMSGVQNEVN-RIFEDFFTH---SANEGNAI----FAPPLDIAETENEILVKVEVPGVAQSDIDITVHDGVLTVKGEKK--VAKEDKNLQWHRLERAYGSFSRSLTLPNTVSHDSIKAAYKDGVLTLSMAKREETKPRQIKI 142          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|522163375|ref|WP_020674583.1| (hypothetical protein [Geopsychrobacter electrodiphilus])

HSP 1 Score: 97.4413 bits (241), Expect = 3.390e-22
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 0
Query:  120 LDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            +DIAET KE+++KAE+P VKKEDVKV   +GVL IS ERKQE   E+   R H  +  YG  +RS  +PD  ++  V+A  +DG+L + ++K E ++P+ I IK
Sbjct:   43 VDIAETSKEFLIKAEIPEVKKEDVKVNLENGVLTISGERKQEK--EESGKRFHRVERQYGSFTRSFTLPDNVDQSKVEATFKDGMLNIAIEKTEAARPKKIEIK 144          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|1125214713|gb|OLB64836.1| (heat-shock protein Hsp20 [Nitrospirae bacterium 13_2_20CM_2_61_4])

HSP 1 Score: 97.8265 bits (242), Expect = 3.634e-22
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 0
Query:   89 MGMEVFNDPFFRPFFARGP-------GGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
            M ++    P    FF R P         +M  AE +  +DI E +KEY++K ELP VKK+DVKVT  +GVL I+ ERK E   E++  + H  + AYG   RS  +PD A+ + V+A  +DGVL V V K E +KP+ I +K
Sbjct:   11 MDLDELESPL-STFFVRTPLRRQNGEQESMTIAEWSPLVDITEDDKEYLIKTELPEVKKDDVKVTVENGVLTITGERKFEK--EEKGRKYHRVERAYGNFVRSFTLPDDADANKVNAEFKDGVLKVHVAKSEAAKPKHIEVK 149          
BLAST of EWM26760.1 vs. NCBI_GenBank
Match: gi|1200006066|ref|WP_087473801.1| (heat-shock protein Hsp20 [Nitrospira cf. moscoviensis SBR1015] >gi|1175911155|gb|OQW31987.1| heat-shock protein Hsp20 [Nitrospira sp. SG-bin2])

HSP 1 Score: 96.6709 bits (239), Expect = 7.473e-22
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = 0
Query:   94 FNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
             N  F RP    G    +  A+    +DI+E+E EY++KAELP VKKEDVKV+  DGVL +S ER+QE   E++  + H  + +YG   RS  +P++ ++  V A   DGVL + + K E  KP+ I +K
Sbjct:   19 LNRAFARPALRNGGKEHLTVADWVPTVDISESEGEYLIKAELPEVKKEDVKVSVEDGVLTLSGERRQEK--EEKGKKYHRVERSYGSFVRSFSLPESVDESGVKAQYTDGVLNLHLPKTEKVKPKSIEVK 146          
The following BLAST results are available for this feature:
BLAST of EWM26760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108848|gb|EWM26760.1|4.718e-165100.00heat shock protein hsp20 [Nannochloropsis gaditana... [more]
gi|980039113|emb|CUS97536.1|1.357e-2340.00heat shock protein Hsp20 [Candidatus Chrysopegis k... [more]
gi|825292014|ref|WP_047134497.1|1.394e-2341.45Hsp20/alpha crystallin family protein [Candidatus ... [more]
gi|1117392013|ref|WP_072150049.1|1.296e-2237.93Hsp20/alpha crystallin family protein [Candidatus ... [more]
gi|1117426050|ref|WP_072151514.1|1.605e-2237.93Hsp20/alpha crystallin family protein [Candidatus ... [more]
gi|493465960|ref|WP_006421140.1|2.153e-2238.78Hsp20/alpha crystallin family protein [delta prote... [more]
gi|1088667590|gb|OHE79031.1|2.664e-2238.62hypothetical protein A2107_03875 [Verrucomicrobia ... [more]
gi|522163375|ref|WP_020674583.1|3.390e-2247.12hypothetical protein [Geopsychrobacter electrodiph... [more]
gi|1125214713|gb|OLB64836.1|3.634e-2241.55heat-shock protein Hsp20 [Nitrospirae bacterium 13... [more]
gi|1200006066|ref|WP_087473801.1|7.473e-2240.77heat-shock protein Hsp20 [Nitrospira cf. moscovien... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4092rna4092Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications