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Properties
| Property Name | Value |
|---|
| Product | u3 small nucleolar rna-interacting protein 2 |
| Orig transcript id | gnl|cribi|Naga_100001g55.8165.mrna |
| Orig protein id | gnl|cribi|Naga_100001g55.8165 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:732646..734492 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4058 ID=rna4058|Name=rna4058|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp
CATTACAGACTTCAAAACTACGTATTGCTGTGTGTAACGCTAAACTAGGT
AATTGGAAGAAAGGAAGTAGAATCCGGACTCGGTGAAGTCAATGGGAAAT
TCAGTAGCAGGAATCCCAATCGATGTTGAAGAAGGCACGGAGACATTGCC
AAACAGTCGGAGCAGCAGTGAGCGTCCGCGAAGTAATCGCGCACACGATA
AGGAAAAGAGTCCGATGCTCCAGACAAAGCAAGGAGTGCCAGGATGCACT
TCCAGGTTGCTTTTATCTATTTCATGTCCATCCAGAGAGGAACACAAGCT
GGTAATGGTAGTTTCCATGCAGCACGGTAAAGACAATCCGCAATGGCAGG
AGCTCGGTCGAACTCGACTCAAACTAAACCAATACAGTGACTCCAACTGC
TATTCTCTGCGAAAAGTGCCTCTGGATTTTCATTTTGAGCTCACACAAAC
AATAAAAATCGACGTATACACTGCTGCAAACGATGAAGACGATGACGAAG
ACGATGCGTTGGACGCTTTTCAAGGATCCATGATGTGCCTCCTCTCCGAG
CTGTGCGCTGCCCCAGATCGCACAGTCTCATTTCCTATTGAACAAAAACC
TTCCCACTCCTTATTCAATGACATACGATTACAGTTGGATGTAACAGCAG
AAAAAGTAGAGTATCAAAATTCCTCGCTGCGGGTGAAGCTCAAAGGAGAA
CATTTCAGACATGTTCTGGGTTCTCAAGGAAAAGAAAAATATTACGTTTG
CGTTTGCCGAACGCATGCACGACAAGGAGAAATTTCAAAAGAACGAGCAC
AAAAGCTAATCATCCACTCCACCGAAGCAATTTCCTTCGCAAGAAAGTCG
TCCCTTCCCGATGGTCCACCTCCGTCTTGGCGGAGCTTCGAAGTCAACAT
GCTCGACCTCTGCGATGGAGACGTGCTTCAATCCATCATCGTAGAAATCT
GGATGCAAAACACAGGTTCAGGCCAGCCGCATCTTGTCGGTGAGATTTGC
ACCACAGTCCAAGATCTCTTGAAGGCCAAGGCCTCTGCGACATTGCCTGT
CCCTGGTTCGGGATCCTTGCCCGCAAAGCTGGTCTTGCAGTCGGCCCGGA
TGATTACTCGGCCTACTTTCCTGGATTTCATACATGGTGGATGCCAGCTG
TCTTTGTTGACTGCCATAGATTTTACAGCATACAATGGCCCATCCGAGGA
TCCCGATTCCCTTCATTTCTGTGGACCTGGCCATTCCCCCCTTACGGCGT
ACCAAGCGGCTATCAAGGCCATCACAACTACACTTGCACCCTATACAAGC
GGGTACTTCCCTGTCTTCGGCTTCGGAGCTAAACCAAAAGAGAGCGGGAA
GGATGTACCCACGTCCCATGGATTTGCGTGCAGCGGTAGCCTGAGGCAGG
CGGAAGTGCTTGGAGTAAATGGTGTCCTGGGCGTATACAAGTCTTGTCTC
GAGCGTATGACGTTTTCAAAACCTCGACGCTTCGCACAAATCATCGCTGA
GGCCGGTAGACACGCCTCGGAATTTCACAAGGCTTTGGACCAGAAGTATG
TCGTGCTACTGCTGCTCACTAATGGAGTGAGCGAAGATATGGATCAAACA
ATAGGCGAAATCATACGAGCCTCGTCTTTGCCTCTGTCAATTTTGATTGT
TGGAATTGGGGGTGCCGATTTCGAACCCCTCAAAAATGCGCTTAGGATCA
CCAACTGCACATATGACTCGCACGGCATGGTCGAAGCGAAGAAAAATTAC
TGCATGACACGGTCACCTCTCAAAAACGCCAGAACAATGGCAACCCGCGA
CATGGTTCGACTTGCTACGTATCGCGATGTGCTCCAAAGGTTGCACAGCA
CGTCAAATTCATATTCTTCGTCGGCTAATGTTCACGAGCTACTAGCCCAA
AACTTACTTTTGGAGCTGCCGCGCCAAATATGCTCCTATTTTTCCTGCCA
TAACATCCAACCACGTGCTCCTCAAATGCGGTCCCCGCGCATACCTCCGA
TATCACAAACTTAAGCTGCTGCTGAGCAGGTATCTGACCAACGGTTTTGA
CACTGTGATGCGCCATATTTGAAGAAACTTAAATTTGCTGCAATTCATTG
GCACCTTGCAGCATGCAACGTATCGCTA back to topprotein sequence of rna4058 >rna4058-protein ID=rna4058-protein|Name=rna4058|organism=Nannochloropsis gaditana|type=polypeptide|length=550bp
MSKRKVGGGSGTKGRLRGGSVRSKPSGGPVAQQERANLDFSLESKRQPND
DEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQY
LAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAG
RLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLES
GRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDL
RGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNL
DGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQ
CPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKP
VAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGS
SLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGL
YVMRLPDERMGEDAVDGGANPESESDEDEEEGGDEKDDEKTGEEEDESDE back to topmRNA from alignment at CM002462.1:732646..734492+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4058 ID=rna4058|Name=rna4058|organism=Nannochloropsis gaditana|type=mRNA|length=1847bp|location=Sequence derived from alignment at CM002462.1:732646..734492+ (Nannochloropsis gaditana)
GATGGGCCGTCCCCGCTCAGACGATGGCGAGCTCAAAGCGACTCAGAACC
GCCCGTCATCCGGTCGCAGCCATGTCACTGTATCAGCAGCATCGTTTTCA
TGCCCTGCATTTCAATCTTCCGTCTCAGGTTTAAGAAATGTCGAAAAGGA
AAGTTGGCGGAGGCAGTGGGACGAAAGGTCGGCTTCGTGGTGGCAGTGTG
CGCAGCAAGCCTAGCGGAGGGCCAGTCGCTCAGCAAGAGCGTGCTAATCT
GGATTTTTCATTGGAGTCTAAACGGCAACCGAATGACGACGAATAcatag
aagaggaaggctcGGAATCGGGGGAAGATGTGCCCCGAAAAAGGGGTCGT
GCCACTCAGCAGGGCACGGATGgggcaatggaggaggaggatgacgagac
AGCAGCAGAGATGCGTGTCCGTCTGGCTAAGCAATATTTGGCTCAAATGG
AGGCAGCTTTGGGTAGCGAaaatgatgaggaggagtcTCATGATGAAGAT
ACTGATCGCGGAAAAGACTCAATGGGTGCGTTATTGGAAAGAGAACGCCT
GAAAGCCTCCGGCTCCCTCAGGCGGGCACTAGCAGGCCGCCTGAGCAATT
TTAGCGCTGCTACGGTGCCCACACACATATTGAAAGGCCACAAACTCGCG
CCAACATGCGTTACAATAACTGCAGATGAACGCACTGCGTTTACGGGTGG
CAAGGATAACGCGATCTTGCGATATGACTTGGAAAGCGGTAGGCGGACGG
CGACCCTCTCATCGTTCTGGCGGGGGGGACAGGGGTACCAATCtcacgag
aaggaggtgctggctCTGGCAGTGTCCTCAGATGGGCGGTATCTGGCCGC
TGGGGGTCGAGACAAGGAGATCAGAATTTGGGATCtacgagggcggggac
acCGGGAAGGTCTTGTGCTGAAACCTGTGAAGACCTTCGCGGGGCACAGG
GACGCCGTCTCTGCGCTTGCTTTTCGTGCCGATGCACACGCCTTGTATTC
TGGCTCTTTCGACCGATGCTTAAAACATTGGAACTTGGATGGAATGATGT
ACGTGGAGACGCTGTTCGGACATCAAGCCGAGATCAACGGCATCGACGCT
TGGCGCCGGGAGCGGCCCGTGACCTGTGGCCGGGACAGGAGCGTGCGAGT
CTGGAAGCTGGCGGACGAGTCGCACATGCTGCTCCAGTGTCCACAGGGGG
taggtgggggcggggccagCAAAGGCCTGGTGATGGGCGGGTCTTTGGAC
TGTCTGTCCATGCTGTCCGAGGAGTGCTTcgtgacggggggggaggacgg
aatgCTGGCGATGTGGAACGTGAACAAGAAAAAGCCGGTCGCTGTCGTCC
CTGCCGCCCATGGGGGAAACAGTCGCTGGATTTCCAGCGTGGCCGCCATC
AAAGGAACGGATTTGGTGGCCTCGGGCTCGAATGACGGTTACGTGCGGCT
GTGGCGGGCCTCGACCACTCCTCAAGGACAAGGGTCCTCCTTGGAGTCGA
CCGGCGCGGCCCTGCTCTGTCCGGGGTATGTGAATGGGCTCGCATTCGGG
CATTCAGGTTCGGTGCTGGTGGCTGCCTGTGGGAAAGAGCACAGGTTGGG
CCGGTGGGCGCCCGAGAAAGGGGCGGTGAACGGCCTGTACGTCATGCGCC
TGCCGGATGAGCGGATGGGGGAAGATGCTGTGGATGGGGGGGCGAATCCT
GAAAGCGAGTccgacgaagacgaagaggaaggtggggacgagaaagatgA
CGAGAAaacgggggaagaggaagatgaaagcGACGAGTGATTGCGGGGGA
GAGTGTCTCGCCCAATTTTGTAAAGAATAGGCTTGCGCATTAGATTT back to topCoding sequence (CDS) from alignment at CM002462.1:732646..734492+ >rna4058 ID=rna4058|Name=rna4058|organism=Nannochloropsis gaditana|type=CDS|length=1653bp|location=Sequence derived from alignment at CM002462.1:732646..734492+ (Nannochloropsis gaditana)
ATGTCGAAAAGGAAAGTTGGCGGAGGCAGTGGGACGAAAGGTCGGCTTCG
TGGTGGCAGTGTGCGCAGCAAGCCTAGCGGAGGGCCAGTCGCTCAGCAAG
AGCGTGCTAATCTGGATTTTTCATTGGAGTCTAAACGGCAACCGAATGAC
GACGAATAcatagaagaggaaggctcGGAATCGGGGGAAGATGTGCCCCG
AAAAAGGGGTCGTGCCACTCAGCAGGGCACGGATGgggcaatggaggagg
aggatgacgagacAGCAGCAGAGATGCGTGTCCGTCTGGCTAAGCAATAT
TTGGCTCAAATGGAGGCAGCTTTGGGTAGCGAaaatgatgaggaggagtc
TCATGATGAAGATACTGATCGCGGAAAAGACTCAATGGGTGCGTTATTGG
AAAGAGAACGCCTGAAAGCCTCCGGCTCCCTCAGGCGGGCACTAGCAGGC
CGCCTGAGCAATTTTAGCGCTGCTACGGTGCCCACACACATATTGAAAGG
CCACAAACTCGCGCCAACATGCGTTACAATAACTGCAGATGAACGCACTG
CGTTTACGGGTGGCAAGGATAACGCGATCTTGCGATATGACTTGGAAAGC
GGTAGGCGGACGGCGACCCTCTCATCGTTCTGGCGGGGGGGACAGGGGTA
CCAATCtcacgagaaggaggtgctggctCTGGCAGTGTCCTCAGATGGGC
GGTATCTGGCCGCTGGGGGTCGAGACAAGGAGATCAGAATTTGGGATCta
cgagggcggggacacCGGGAAGGTCTTGTGCTGAAACCTGTGAAGACCTT
CGCGGGGCACAGGGACGCCGTCTCTGCGCTTGCTTTTCGTGCCGATGCAC
ACGCCTTGTATTCTGGCTCTTTCGACCGATGCTTAAAACATTGGAACTTG
GATGGAATGATGTACGTGGAGACGCTGTTCGGACATCAAGCCGAGATCAA
CGGCATCGACGCTTGGCGCCGGGAGCGGCCCGTGACCTGTGGCCGGGACA
GGAGCGTGCGAGTCTGGAAGCTGGCGGACGAGTCGCACATGCTGCTCCAG
TGTCCACAGGGGGtaggtgggggcggggccagCAAAGGCCTGGTGATGGG
CGGGTCTTTGGACTGTCTGTCCATGCTGTCCGAGGAGTGCTTcgtgacgg
ggggggaggacggaatgCTGGCGATGTGGAACGTGAACAAGAAAAAGCCG
GTCGCTGTCGTCCCTGCCGCCCATGGGGGAAACAGTCGCTGGATTTCCAG
CGTGGCCGCCATCAAAGGAACGGATTTGGTGGCCTCGGGCTCGAATGACG
GTTACGTGCGGCTGTGGCGGGCCTCGACCACTCCTCAAGGACAAGGGTCC
TCCTTGGAGTCGACCGGCGCGGCCCTGCTCTGTCCGGGGTATGTGAATGG
GCTCGCATTCGGGCATTCAGGTTCGGTGCTGGTGGCTGCCTGTGGGAAAG
AGCACAGGTTGGGCCGGTGGGCGCCCGAGAAAGGGGCGGTGAACGGCCTG
TACGTCATGCGCCTGCCGGATGAGCGGATGGGGGAAGATGCTGTGGATGG
GGGGGCGAATCCTGAAAGCGAGTccgacgaagacgaagaggaaggtgggg
acgagaaagatgACGAGAAaacgggggaagaggaagatgaaagcGACGAG
TGA back to top
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