EWM26654.1, cds4048 (CDS) Nannochloropsis gaditana

Overview
NameEWM26654.1
Unique Namecds4048
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:732783..734435 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26654.1
Productu3 small nucleolar rna-interacting protein 2
Orig transcript idgnl|cribi|Naga_100001g55.8165.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:732783..734435 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|585108742|gb|EWM26654.1| (u3 small nucleolar rna-interacting protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 1117.84 bits (2890), Expect = 0.000e+0
Identity = 550/550 (100.00%), Postives = 550/550 (100.00%), Query Frame = 0
Query:    1 MSKRKVGGGSGTKGRLRGGSVRSKPSGGPVAQQERANLDFSLESKRQPNDDEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDERMGEDAVDGGANPESESDEDEEEGGDEKDDEKTGEEEDESDE 550
            MSKRKVGGGSGTKGRLRGGSVRSKPSGGPVAQQERANLDFSLESKRQPNDDEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDERMGEDAVDGGANPESESDEDEEEGGDEKDDEKTGEEEDESDE
Sbjct:    1 MSKRKVGGGSGTKGRLRGGSVRSKPSGGPVAQQERANLDFSLESKRQPNDDEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDERMGEDAVDGGANPESESDEDEEEGGDEKDDEKTGEEEDESDE 550          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|298708219|emb|CBJ30558.1| (similar to U3 small nucleolar RNA interacting protein 2 [Ectocarpus siliculosus])

HSP 1 Score: 376.326 bits (965), Expect = 2.424e-121
Identity = 219/452 (48.45%), Postives = 293/452 (64.82%), Query Frame = 0
Query:   93 RVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWR---GGQ--GYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHG----GNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDERMGEDAV--DGGANPESESDEDEEEGG 533
            R+RLA+  L +++A    EN EE + +ED D   D +G  L   RL+A+G L R +A  L     +      ++GHKL+PTCV ++ D+ TAF+G KDN+I+R+D+E+G+R  T+   WR   GG+    ++H KEVL LAVS DGRYLA+GGRD+ I +WD R            V+TF GH+D VS+LAFRA++ AL+SGS DRC+KHW+L+ M YVET+FGHQ+EIN ID+WR+ER VT GRDR+VR+WK+ ++SH++ + P G            GGS+DC+ ML+E+ F TGGEDG LA+W   KKKP  +VPAAHG    G  RWIS++  +K +DLV SGSNDG VRLWRA      +  SLE   A++   G+VNGLA   +G  LVAA G+EHRLGRW  +K A N + V+ LP     E AV  D  +  E + D D EE G
Sbjct:   98 RLRLARDVLMKLDAE-QRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRV-TMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTD--------TVVETFRGHQDTVSSLAFRANSLALFSGSHDRCVKHWDLNEMGYVETMFGHQSEINAIDSWRKERLVTGGRDRTVRLWKVLEDSHLVFR-PVG------------GGSIDCVRMLNEDWFTTGGEDGSLALWFAMKKKPAMLVPAAHGYSAVGIPRWISAIGCLKQSDLVVSGSNDGSVRLWRADV----EARSLEQV-ASVPLEGFVNGLAVSSTGKFLVAAVGQEHRLGRWEHQKKARNEICVVPLPSGAEDEVAVAMDTESAEEDQGDIDGEEAG 521          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|695377770|ref|XP_009516093.1| (hypothetical protein PHYSODRAFT_294254 [Phytophthora sojae] >gi|348689004|gb|EGZ28818.1| hypothetical protein PHYSODRAFT_294254 [Phytophthora sojae])

HSP 1 Score: 336.65 bits (862), Expect = 1.733e-106
Identity = 186/422 (44.08%), Postives = 269/422 (63.74%), Query Frame = 0
Query:   87 ETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRT--ATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLP 506
            ETA E R+RLAK+YL ++ A      D EE   +D D  +  +GA L+++ L+A G L + +A   ++F      T  LKGH+L  T + +  D +TAF+  KD ++LR+DL   ++T  +  +      +     ++ +LALA SSDG++LA+GGRDK +R+WD+  +G  +       ++FAGHRDAVSALAFR  +H+L+SGSFDR +KHWNL  M YVETLFGHQ+E+NG+D+  +ER V+CGRDRSVR+WK+ +E+ ++          G S      GS+DC+ M+++E +VTGG+DG L++W   +KKPV V+P AH G  +WISSVA +  TDL+ASGS+DG +RLW+A      Q  +L +  +  L  G+VNGL F      L+A  G+EHRLGRW   K   NG+ ++ LP
Sbjct:   65 ETAQEKRLRLAKEYLGKITAQEAGGTDAEE---DDEDGVEACVGARLQQDALEAMGKLFKQVAASYADFEFDADSTKFLKGHRLPVTSLCLLEDGKTAFSAAKDGSLLRWDLAEQKKTKLSLPADDVAADKCKTDKDRCILALAASSDGKFLASGGRDKLVRVWDVE-KGELQ-------ESFAGHRDAVSALAFRLRSHSLFSGSFDRSIKHWNLTEMGYVETLFGHQSEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFY--------GNS------GSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVCVIPNAHDG--KWISSVAVMPRTDLIASGSSDGQIRLWQADL----QARTLTAVTSIPL-EGFVNGLCFDSKARFLLAGVGQEHRLGRWEKLK-VKNGIAIIALP 453          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|675173415|ref|XP_008895592.1| (hypothetical protein PPTG_04975 [Phytophthora parasitica INRA-310] >gi|566015339|gb|ETI38250.1| hypothetical protein F443_15965 [Phytophthora parasitica P1569] >gi|567952796|gb|ETK78460.1| hypothetical protein L915_15515 [Phytophthora parasitica] >gi|567981452|gb|ETL31891.1| hypothetical protein L916_15413 [Phytophthora parasitica] >gi|568010942|gb|ETL85120.1| hypothetical protein L917_15237 [Phytophthora parasitica] >gi|568040849|gb|ETM38280.1| hypothetical protein L914_15378 [Phytophthora parasitica] >gi|568105128|gb|ETN19773.1| hypothetical protein PPTG_04975 [Phytophthora parasitica INRA-310] >gi|570319103|gb|ETO67051.1| hypothetical protein F444_15947 [Phytophthora parasitica P1976] >gi|570942868|gb|ETP08125.1| hypothetical protein F441_15804 [Phytophthora parasitica CJ01A1] >gi|570973632|gb|ETP36186.1| hypothetical protein F442_15812 [Phytophthora parasitica P10297])

HSP 1 Score: 336.265 bits (861), Expect = 1.986e-106
Identity = 186/422 (44.08%), Postives = 272/422 (64.45%), Query Frame = 0
Query:   87 ETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTA-TLSSFWRGGQGYQS-HEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLP 506
            ETA E R+RLAK+YL ++ A      D+E    ++ D  ++ +GA L+++ L+A G L + +A   + F      T  LKGH+L  T + +  D +TAF+  KD ++LR+DL   ++T  TL +     +   +  ++ +LALA SSDG++LA+GGRDK +R+WD+  +G  +       ++FAGHRDAVSALAFR  +H+L+SGSFDR +KHWNL  M YVETLFGHQ+E+NG+D+  +ER V+CGRDRSVR+WK+ +E+ ++          G S      GS+DC+ M+++E +VTGG+DG L++W   +KKPV V+P AH G  +WISSVA +  TDL+ASGS+DG +RLW+A      QG +L    A++   G+VN L+F      L+A  G+EHRLGRW   K   NG+ ++ LP
Sbjct:   62 ETAQEKRLRLAKEYLGKITAQEAGGTDDES---DEGDGVEERVGARLQQDALEAMGKLFKKVAADYTEFEFDADSTKFLKGHRLPVTSLCLLEDGKTAFSAAKDGSLLRWDLAQQKKTKLTLPNDDVAAEKATTDKDRCILALAASSDGKFLASGGRDKLVRVWDVE-KGELQ-------ESFAGHRDAVSALAFRLRSHSLFSGSFDRSIKHWNLTEMGYVETLFGHQSEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFY--------GNS------GSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVCVIPNAHDG--KWISSVAVMPRTDLIASGSSDGQIRLWQADL----QGRTLTPV-ASIPLEGFVNALSFDAKARFLLAGVGQEHRLGRWEKLK-VKNGIAIIALP 450          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|970633710|gb|KUF79249.1| (U3 small nucleolar RNA-interacting protein 2 [Phytophthora nicotianae] >gi|970663046|gb|KUG00318.1| U3 small nucleolar RNA-interacting protein 2 [Phytophthora nicotianae])

HSP 1 Score: 334.339 bits (856), Expect = 1.076e-105
Identity = 185/422 (43.84%), Postives = 271/422 (64.22%), Query Frame = 0
Query:   87 ETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTA-TLSSFWRGGQGYQS-HEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLP 506
            ETA E R+RLAK+YL ++ A      D+E    ++ D  ++ +GA L+++ L+A G L + +A   + F      T  LKGH+L  T + +  D +TAF+  KD ++LR+DL   ++T  TL +     +   +  ++ +LALA SSDG++LA+GGRDK +R+WD+  +G  +       ++FAGHRDAVSALAFR  +H+L+SGSFDR +KHWNL  M YVE LFGHQ+E+NG+D+  +ER V+CGRDRSVR+WK+ +E+ ++          G S      GS+DC+ M+++E +VTGG+DG L++W   +KKPV V+P AH G  +WISSVA +  TDL+ASGS+DG +RLW+A      QG +L    A++   G+VN L+F      L+A  G+EHRLGRW   K   NG+ ++ LP
Sbjct:   62 ETAQEKRLRLAKEYLGKITAQEAGGTDDES---DEGDGVEERVGARLQQDALEAMGKLFKKVAADYTEFEFDADSTKFLKGHRLPVTSLCLLEDGKTAFSAAKDGSLLRWDLAQQKKTKLTLPNDDVAAEKATTDKDRCILALAASSDGKFLASGGRDKLVRVWDVE-KGELQ-------ESFAGHRDAVSALAFRLRSHSLFSGSFDRSIKHWNLTEMGYVEALFGHQSEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFY--------GNS------GSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVCVIPNAHDG--KWISSVAVMPRTDLIASGSSDGQIRLWQADL----QGRTLTPV-ASIPLEGFVNALSFDAKARFLLAGVGQEHRLGRWEKLK-VKNGIAIIALP 450          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|1214682861|gb|OWZ00983.1| (U3 small nucleolar RNA-interacting protein [Phytophthora megakarya])

HSP 1 Score: 330.102 bits (845), Expect = 4.735e-104
Identity = 190/427 (44.50%), Postives = 268/427 (62.76%), Query Frame = 0
Query:   82 EEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTA-TL-SSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLP 506
            EEE  ETA E R+RLAK+YL ++      + D+E+   E+       +GA L+++ L+A G L + +A   + F      T  LKGH+L  T V +  D RTAF+  KD ++LR+DL   ++T  TL        +     ++ +LALA SSDG++LA+GGRDK +R+WD   +G  +       ++FAGHRDAVSALAFR  +H+L+S SFDR +KHWNL  M YVETLFGHQ+E+NG+D+  +ER V+CGRDRSVR+WK+ +E+ ++          G S      GS+DC+ M+++E +VTGG+DG L++W   +KKPV V+P AH G  +WISSVA +  TDLVASGS+DG +RLW+A      QG +L    A++   G+VN L F      L+A  G+EHRLGRW   K   NG+ ++ LP
Sbjct:   55 EEEQKETAQEKRLRLAKEYLGKITEQETGDTDDEDDGVEE------RVGARLQQDALEAMGRLFKKVASDYTAFEFDADSTKFLKGHRLPVTSVCLLDDGRTAFSAAKDGSLLRWDLAQQKKTKLTLPKDDVAADKAKTDKDRCILALAASSDGKFLASGGRDKLVRVWDAE-KGELQ-------ESFAGHRDAVSALAFRLRSHSLFSASFDRSIKHWNLTEMGYVETLFGHQSEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFY--------GNS------GSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVCVIPNAHDG--KWISSVAVMPRTDLVASGSSDGQIRLWQADL----QGRTLTPV-ASIPLEGFVNALCFDAKARFLLAGVGQEHRLGRWEKLK-VKNGIAIIALP 445          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|301118374|ref|XP_002906915.1| (U3 small nucleolar RNA-interacting protein, putative [Phytophthora infestans T30-4] >gi|262108264|gb|EEY66316.1| U3 small nucleolar RNA-interacting protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 327.405 bits (838), Expect = 5.070e-103
Identity = 190/422 (45.02%), Postives = 269/422 (63.74%), Query Frame = 0
Query:   87 ETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTA-TLSSFWRGGQGYQSHE-KEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLP 506
            ETA E R+RLAK+YL ++ A     +DE++  D   +R    +GA L+++ L+A G L + +A   S F      T  LKGH+L  T + +  D +TAF+  KD ++LR+DL   ++T  TL       +   + + + VLALA SSDG++LA+GGRDK +R+WD+  +G  +       ++FAGHRDAVSALAFR  +H+L+SGS DR +KHWNL  M YVETLFGHQ+E+NG+D+  +ER V+CGRDRSVR+WK+ +E+ ++          G S      GS+DC+ M+++E +VTGG+DG L++W   +KKPV V+P AH G  +WISSVA +  TDLVASGS+DG +RLW+A      QG SL    A++   G+VN L F      L+A  G+EHRLGRW   K   NG+ ++ LP
Sbjct:   62 ETAQEKRLRLAKEYLGKITAQEAGTDDEDDEGDGVEER----VGARLQQDALEAMGKLFKKVAADYSEFEFDADSTKFLKGHRLPVTSLCLLEDGKTAFSAAKDGSLLRWDLAQQKKTKLTLPKDDVAAEKATTDKGRCVLALAASSDGKFLASGGRDKLVRVWDVE-KGELQ-------ESFAGHRDAVSALAFRLRSHSLFSGSLDRSIKHWNLTEMGYVETLFGHQSEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFY--------GNS------GSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVCVIPNAHDG--KWISSVAVMPRTDLVASGSSDGQIRLWQADL----QGRSLTPV-ASMPLEGFVNALCFDAKARFLLAGVGQEHRLGRWEKLK-VKNGIAIIALP 449          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|919052239|ref|XP_013408089.1| (PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform X3 [Lingula anatina] >gi|919052241|ref|XP_013408090.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform X4 [Lingula anatina])

HSP 1 Score: 325.479 bits (833), Expect = 5.045e-102
Identity = 201/513 (39.18%), Postives = 289/513 (56.34%), Query Frame = 0
Query:    7 GGGSGTKGRLRGGSVRSKP--SGGPVAQQERANLDFSLESKRQPNDDEYIEEEGSE-SGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQG-YQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTC-GRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGG---------NSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRL 505
            G G   KG  R     SKP  +G  +  +++      +++K Q   DE I  +  E + E+    +G++ Q  TD   EEE   TA E ++RL KQYLAQ+EA    + D+EE HD         +G  L+ + L+ +G L+R LA      S   +   +L+GH+LA TC+ IT DE+  F+G KD +I+++ LES ++  T+    +G +  +  H   VL LAVSSDG +L +G R+K I +W+            + + TF GHRDAVS LAFR   H L+S S DR +K WNLD M YVETLFGHQ  I+GID+  R+R VT  GRD +VR+WK+ +ES ++                  GG +DC+++++EE FV+G ++  L++W V KKKP+  V  AH G         N  WI+SVAAI  +DL+ASGS DG +RLW+A      QG    +    +   G++N + F   G+ LVAA G+EH+LGRW   K A NG+ ++RL
Sbjct:   10 GRGGTAKGSKRKIDKSSKPQKNGTTIPNKKK------IKTKFQSGGDEEIPSDSDEINSEEETYTKGKSHQYSTDEEEEEE---TAQEKKLRLTKQYLAQLEAEEAEKTDDEEGHD--------LVGERLKTDILEQAGKLQRKLADEYVQPSPDDIT--LLRGHQLAVTCLVITPDEKHVFSGSKDCSIVKWSLESKKKVHTIHGGRKGTEDRHVGHTSHVLCLAVSSDGTFLVSGDRNKLIHVWNPD--------TCQLLHTFTGHRDAVSGLAFRRGTHQLFSASHDRSVKIWNLDEMAYVETLFGHQDSISGIDSGTRDRAVTSGGRDGTVRIWKVVEESQLVFHG--------------HGGCIDCVALINEEHFVSGSDNNSLSLWYVQKKKPICTVQNAHPGSEDGDPTVKNENWITSVAAIPNSDLIASGSKDGCLRLWKAE-----QGFRELTVHHVIPVRGFINCVQFSSQGNYLVAAVGQEHKLGRWWRLKDAKNGVCIIRL 476          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|1176083651|ref|XP_020612025.1| (U3 small nucleolar RNA-interacting protein 2-like isoform X3 [Orbicella faveolata])

HSP 1 Score: 323.553 bits (828), Expect = 2.005e-101
Identity = 183/475 (38.53%), Postives = 276/475 (58.11%), Query Frame = 0
Query:   52 EYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTC-GRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGG----------NSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCP--GYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDERMGED 513
            EYI+E+   S  D+P  R     +      EE D ETA E R+RLAKQYLAQ+E+       EE+   E  D   D++   L+++ L+ +G L++ +A + +  S A +   +L+GH+L+ TC+ ++ D++  F+  KD +I+++++E+G++   +S   +  +G + H+  VL LAV+SDG++LA+GGRDK I IWD     H        + TF GH+DAVS +AFR   H L+S S DR  K WNLD M YVETLFGH+  I  ID+  R+R V+  GRDRS+RVWK+ +ES ++   P  +            GSLDC+ ++++E  V+G +DG L++W+V KKKP+  V  AH            +  WI+S+A+++ TDL+ASGS D  ++LW         G    S       P  G+VN L+F + G+ L+A  G+EHRLGRW   K A N + V  +P +R  E+
Sbjct:   44 EYIDEDELGSDSDIPSDREEDMVE----EGEERDVETAQEKRLRLAKQYLAQLES-------EEQKKKESDDIDHDAIAHRLKQDVLEQTGRLQKRIASQYTQPSPAAI--RVLRGHQLSVTCLCVSPDDKFIFSASKDCSIIKWNIETGQKEGKISGCHKASEGNKGHKGHVLCLAVTSDGKFLASGGRDKVIHIWDPCSLHH--------LHTFKGHKDAVSGVAFRRGTHQLFSCSHDRTAKIWNLDEMAYVETLFGHEDSITAIDSLTRDRAVSAGGRDRSLRVWKVVEESQLVFNAPGNI------------GSLDCVQLINDEHMVSGADDGSLSLWSVTKKKPLCTVANAHCKPDNSSDECIPDESWITSIASLRSTDLLASGSCDSCIKLWEC-------GDGFRSLKQLFSIPMVGFVNALSFSNDGNALIAGIGQEHRLGRWWRLKNAKNSVCV--IPLQRTVEN 476          
BLAST of EWM26654.1 vs. NCBI_GenBank
Match: gi|156365689|ref|XP_001626776.1| (predicted protein [Nematostella vectensis] >gi|156213665|gb|EDO34676.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 322.013 bits (824), Expect = 5.829e-101
Identity = 192/503 (38.17%), Postives = 289/503 (57.46%), Query Frame = 0
Query:   20 SVRSKPSGGPVAQQERANLDFSLESKRQPNDDEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTC-GRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNS-------RWISSVAAIKGTDLVAS-GSNDGYVRLWRASTTPQGQGSSLESTGAALLCP--GYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVM---RLPDE 508
            S R +P      Q+ + +  F  +  ++    +Y EE  S+S      + G A+   +D +      ETA E ++RL K+YLAQ+EA       EE++  E  +   D++   L+++ L+ SG ++R +A +LS  S  T+   IL+GH+   TC+ ++ D++  FT  KD  I++++++SG+R   ++   +   G + H++++LALA+++DG+YLA+GG+DK IRIWD     H        + TF GHRD +S LAFR  +H L+S S D+ +K WNLD M YVETLFGHQ  + GID+  R+R  T  GRDR++R+WK+ +ES ++          GA      GGS+DC+ +++E+ F++G +DG L MWN  KKKP+  V  AHG  S        WI+++AA+K TDLVAS GS D  VRLW+        G    S       P  G+VN L+F   GS+L A  G+EHRLGRW   K A N L ++   R P+E
Sbjct:   13 STRKRP------QKAQKDTKFKTKKAKETPAKKYDEELDSDSDIHSDYESGNASGSESDVS------ETAQEKKLRLTKEYLAQLEA-------EEKNKRELEEIDHDAIAHRLQQDVLEQSGRVQRKIADQLSLSSTHTI--RILRGHQQPVTCLCVSPDDKFVFTAAKDCTIIKWNVDSGKREFRIAGGPKLEAGSKGHKEQILALAITTDGKYLASGGKDKLIRIWDPDTSKH--------IHTFKGHRDVISGLAFRRGSHQLFSASHDKTVKIWNLDEMAYVETLFGHQDAVTGIDSLSRDRAATAGGRDRTLRIWKVVEESQLVF--------NGA------GGSIDCIELINEDHFLSGSDDGSLTMWNTAKKKPLCTVDNAHGKPSDSTTPDESWITALAAVKSTDLVASAGSCDSCVRLWQC-------GPGYRSIKPLFSVPVAGFVNALSFSSDGSMLFAGVGQEHRLGRWWRIKNAKNSLCIIPLERKPNE 465          
The following BLAST results are available for this feature:
BLAST of EWM26654.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108742|gb|EWM26654.1|0.000e+0100.00u3 small nucleolar rna-interacting protein 2 [Nann... [more]
gi|298708219|emb|CBJ30558.1|2.424e-12148.45similar to U3 small nucleolar RNA interacting prot... [more]
gi|695377770|ref|XP_009516093.1|1.733e-10644.08hypothetical protein PHYSODRAFT_294254 [Phytophtho... [more]
gi|675173415|ref|XP_008895592.1|1.986e-10644.08hypothetical protein PPTG_04975 [Phytophthora para... [more]
gi|970633710|gb|KUF79249.1|1.076e-10543.84U3 small nucleolar RNA-interacting protein 2 [Phyt... [more]
gi|1214682861|gb|OWZ00983.1|4.735e-10444.50U3 small nucleolar RNA-interacting protein [Phytop... [more]
gi|301118374|ref|XP_002906915.1|5.070e-10345.02U3 small nucleolar RNA-interacting protein, putati... [more]
gi|919052239|ref|XP_013408089.1|5.045e-10239.18PREDICTED: U3 small nucleolar RNA-interacting prot... [more]
gi|1176083651|ref|XP_020612025.1|2.005e-10138.53U3 small nucleolar RNA-interacting protein 2-like ... [more]
gi|156365689|ref|XP_001626776.1|5.829e-10138.17predicted protein [Nematostella vectensis] >gi|156... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4058rna4058Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications