rna4048, rna4048 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4048
Unique Name	rna4048
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1074
Alignment location	CM002462.1:706553..708652 -

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Properties


Property Name	Value
Product	mg(2 ) transport atpase protein c
Orig transcript id	gnl\|cribi\|Naga_100001g65.8121.mrna
Orig protein id	gnl\|cribi\|Naga_100001g65.8121
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:706553..708652 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g65	gene3894	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4048	rna4048-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26610.1	cds4038	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:706553..708652-
coding sequence from alignment at CM002462.1:706553..708652-

mRNA sequence

>rna4048 ID=rna4048|Name=rna4048|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
ATGGACACGAGCACGGCCGTAAGCGAAGGAATAGCCCCGCTACTGAATCC
CTTCCTCCTCACGTACACCATGGTTATGAGTCTGATGCTATTGAGCCTCC
TGCGCTACGCCAATAACCGCCCTGCCGCTGCCTTTCAAGCGGCACCTATC
CTTTTAAAGCGCTTAGGCCTTCCTATATCGTCTTTCTCGTCCTCACTTTT
CTCTGCGTCAAGTGTATCGACAGTCCCCCGTAGCCTCCCCTCCTTCGCAA
ATGAGACCTTGACGCCGGCCGGGACACGAATGCCCGCTTGCGTCCACCGC
ATCCTCACCCGTGCCGAGGCCAAGGAGCGCGTACTGGTGGTTGGCGACGT
TCACGGGTGTCTGGAAGAGCTGCAAGCCTTGTTGGTCAAGGCGAACTACA
CGGCCGCCAGGGATTCTGTGGTCCTGGTGGGGGACCTCGTCAATAAAGGG
CCTCTGTCCGCCGAGACGGTCAAGTGGTGCCGCACACAAGGCTTCTACAG
CGTGCGGGGCAATCACGACGACAGCGCCCTGGCTGCGTATTTCCGCGTCG
GCAAGTTCGCGGGTGTTTCGTCTCTGCCTCAAGCCTACGACTTTGTGGCG
GCGCTGGACGAAGCCGACGTAGCATGGCTGGACAGCTTGCCTTACACGCT
CTCCATCGAGCACCTAGGCGTGGTCGTGGTGCACGCGGGCTTGCTGCCAG
GGCGACCGCTACAAATGCAGCAGGCGGCCGACATGAGTCGCATGCGGAGT
GTGAAGCGTGCGGGAGAGGGGGGGGAGGGGACCTGGGTGGGGGTGGAGTA
CATCCCAGAGAACGGCGAGGCGGAGCCCTGGGCGAAGGTGTGGTCACAGG
AAGGGAAGGAGTGCGAGGGGGGGGAGGGCTCGACGGACGCGCGGCATTTA
TTGTTCGGGCACGACGCCAAGAGGGGCCTGCAGGTGTTCCGGAAGGCGAC
CGGACTGGACACAGGCTGTTGCTACGGTAGGGAGTTGACCCTGGCCATTT
TGCCGGGGGAGGAGCGCATCTCTGTGAAAGCGTTGAAGGCCTACCAGGTC
CCGCACGGGCTGAAAAGTGAATGA

protein sequence of rna4048

>rna4048-protein ID=rna4048-protein|Name=rna4048|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVS
ALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAV
KMHSSALSSLGITELEIITRLLMATFAGASIGFERRYSERPAGLRTMALV
SLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGG
RRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFT
RMIRLRRRDLASLAERAFSLKPAAPAAKTPIPTGTSSVPASNPSTRQETL
MVAGGAGGSLLSSPPPDSPFLVGTRRPNSSTPSASSSFRGKAPSRGASPA
KRGGGSSKASLKTNGCEEGDEAPGIHEYAAGVPGPSDLCESTSGAVGLGI
QKDKQRRS

mRNA from alignment at CM002462.1:706553..708652-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4048 ID=rna4048|Name=rna4048|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002462.1:706553..708652- (Nannochloropsis gaditana)
ATGGGAGAGGCACGGCGCAGCAACCATGCACATTCTCAACGAGCTTGTCG
GCTACAGGGTAGCCGGGTATGGCTTGCTGCAGGGATGTTGCTATCTTACG
CAGTGTTGTCAGTTGCCTTTCACCTGTCTCCTACACGGGTCACGGTTTCA
GCGCTAGTGGCACACCCAAAAAATTCTTTCCCACCCTCGCGAAGGTCGCT
GGTGCCATCGATGGTGTGCGCAGCAAGATCACGTACGAATGTGGGCATGG
TCCGGAGCCGCTCTGCCTTGTTTTATCCGCGGCACTGCCGAGGGGCCGTG
AAGATGCACAGCAGTGCATTAAGTAGCCTGGGAATAACAGAGTTAGAGAT
AATCACCCGCCTGCTCATGGCAACGTTCGCAGGTGCCTCCATTGGCTTTG
AACGTCGGTATTCGGAGCGTCCGGCGGGACTGCGCACGATGGCTCTAGTC
TCCCTGGGCGCCGCAATCTTCACCATCATCAGCCTGGGCATCCCGGGAGA
CAAATCGCGCATGGCGGCCTCGGTGGCCTCGGGCGTGGGTTTCATCGGGG
CCGGCGTCATCTCGCAGAATGGCTTCGAGGACTCCTCCAGGTCGGGCGGG
CGGCGCATCCAGCAAGTGAACGGTTTGACCACGGCCACCGCCATCTGGGT
CTCGGCGGCCCTGGGCGTCTCGAGCGGGGCGGGACTAAACCTCCTGACCT
TCATCGGGGCCGCGCTCGCTGTCTGCGTCCTGCGCGTCGGACGCTTCACG
CGCATGATCCGTTTACGCCGACGCGATTTGGCCAGTCTGGCGGAGAGGGC
CTTCAGTCTCAAGCCCGCCGCCCCCGCCGCAAAGACTCCTATCCCCACGG
GCACCTCCTCGGTCCCAGCGTCCAATCCGTCGACCAGGCAGGAGACCTTG
ATGGTGGCGGGTGGGGCGGGCGGAAGCTTGCTTTCTTCTCCGCCCCCCGA
TTCCCCCTTCTTGGTGGGCACACGGCGGCCGAACTCGTCCACCCCAAGCG
CCTCGTCAAGTTTCAGAGGAAAGGCTCCGTCGAGGGGGGCCTCCCCAGCG
AAGAGAGGAGGAGGCTCCTCGAAGGCCTCTTTGAAGACAAATGGGTGCGA
GGAGGGTGACGAGGCTCCGGGGATCCACGAGTATGCCGCAGGCGTACCCG
GGCCCAGTGATTTGTGCGAGTCGACCAGTGGCGCAGGTATGGACTCTCCT
GTGAGAGTTGGCGACGGGGTGGCCACAGCCGGTGAAGGAGAAGAAGGGCC
GGTTGGACCGGGTTCAGGAAGCGGAGATTAATAGAGGGCTTCCCTCTCAC
TCTCCGGTGAGGCGGTTGCAGGGTGTGCGGACGTGGTTTGGAGCGAGGCC
TGAATATGGAACGATGACGGCTGGCGCAAGAGGGGATACTAAGGGAATAT
GTGTATAGAGAAGATGAGAAATTTTGGCCGCCAGCGAGAGGGTTGATACG
GGAGAGCCCAATATATTAAATACTAGAAAGAAAAAATTTGCCAAATGGAG
ATGGCGGTTCTTTTGTTCTTTAACTGACCAAAATTATGAACTATCTACAC
CCTAGTCGCTGGTGACGTCAAGGAGCTCTAAATAGAGTACCCTCGGTTTG
TTTGCCGCAGCGGACGTGGCTAGGATCCTTGGACCATCAACTGCACGCCG
TGATGTCGTATAAATTAAGGTACACTGCAGCAATTGGTGGTGCCACGTTG
GACCTTCACATTTCCACAGTTTCCTGCGTGGCCCATCTCAAATAAACATC
TTGGAAAATGCAGCATGTTGCGGAGAGTAATACACTTTAAATAAAGCGAA
TAATGAATGAGATCTTGGATATGAATGAGCTACAGCGATTTTTCAAACTG
TAGAGGCCAGCAGGAAAACATAGCTCGGCGTGATGTCGCTGGATTTAATT
TTTAAGGCTTCCCACGGGGGAGTCGAGGTACCGCGAACAGGCTGGGGCGA
ATTCTCCCTGTCTTCTCGCTGGGCGACTTTTTCGGATGCTGGGCTTCAAG
GTTTATTGGCAATTACAGTGCCGCCCGTCTTCTCATTTTCACGCTTTTAT
CCTACACAGTTGGCCTAGGTATACAAAAGGATAAACAAAGACGGTCATAG

Coding sequence (CDS) from alignment at CM002462.1:706553..708652-

>rna4048 ID=rna4048|Name=rna4048|organism=Nannochloropsis gaditana|type=CDS|length=2454bp|location=Sequence derived from alignment at CM002462.1:706553..708652- (Nannochloropsis gaditana)
TTGGCCTAGGTATACAAAAGGATAAACAAAGACGGTCATAGATGGGAGAG
GCACGGCGCAGCAACCATGCACATTCTCAACGAGCTTGTCGGCTACAGGG
TAGCCGGGTATGGCTTGCTGCAGGGATGTTGCTATCTTACGCAGTGTTGT
CAGTTGCCTTTCACCTGTCTCCTACACGGGTCACGGTTTCAGCGCTAGTG
GCACACCCAAAAAATTCTTTCCCACCCTCGCGAAGGTCGCTGGTGCCATC
GATGGTGTGCGCAGCAAGATCACGTACGAATGTGGGCATGGTCCGGAGCC
GCTCTGCCTTGTTTTATCCGCGGCACTGCCGAGGGGCCGTGAAGATGCAC
AGCAGTGCATTAAGTAGCCTGGGAATAACAGAGTTAGAGATAATCACCCG
CCTGCTCATGGCAACGTTCGCAGGTGCCTCCATTGGCTTTGAACGTCGGT
ATTCGGAGCGTCCGGCGGGACTGCGCACGATGGCTCTAGTCTCCCTGGGC
GCCGCAATCTTCACCATCATCAGCCTGGGCATCCCGGGAGACAAATCGCG
CATGGCGGCCTCGGTGGCCTCGGGCGTGGGTTTCATCGGGGCCGGCGTCA
TCTCGCAGAATGGCTTCGAGGACTCCTCCAGGTCGGGCGGGCGGCGCATC
CAGCAAGTGAACGGTTTGACCACGGCCACCGCCATCTGGGTCTCGGCGGC
CCTGGGCGTCTCGAGCGGGGCGGGACTAAACCTCCTGACCTTCATCGGGG
CCGCGCTCGCTGTCTGCGTCCTGCGCGTCGGACGCTTCACGCGCATGATC
CGTTTACGCCGACGCGATTTGGCCAGTCTGGCGGAGAGGGCCTTCAGTCT
CAAGCCCGCCGCCCCCGCCGCAAAGACTCCTATCCCCACGGGCACCTCCT
CGGTCCCAGCGTCCAATCCGTCGACCAGGCAGGAGACCTTGATGGTGGCG
GGTGGGGCGGGCGGAAGCTTGCTTTCTTCTCCGCCCCCCGATTCCCCCTT
CTTGGTGGGCACACGGCGGCCGAACTCGTCCACCCCAAGCGCCTCGTCAA
GTTTCAGAGGAAAGGCTCCGTCGAGGGGGGCCTCCCCAGCGAAGAGAGGA
GGAGGCTCCTCGAAGGCCTCTTTGAAGACAAATGGGTGCGAGGAGGGTGA
CGAGGCTCCGGGGATCCACGAGTATGCCGCAGGCGTACCCGGGCCCAGTG
ATTTGTGCGAGTCGACCAGTGGCGCAGTTGGCCTAGGTATACAAAAGGAT
AAACAAAGACGGTCATAGATGGGAGAGGCACGGCGCAGCAACCATGCACA
TTCTCAACGAGCTTGTCGGCTACAGGGTAGCCGGGTATGGCTTGCTGCAG
GGATGTTGCTATCTTACGCAGTGTTGTCAGTTGCCTTTCACCTGTCTCCT
ACACGGGTCACGGTTTCAGCGCTAGTGGCACACCCAAAAAATTCTTTCCC
ACCCTCGCGAAGGTCGCTGGTGCCATCGATGGTGTGCGCAGCAAGATCAC
GTACGAATGTGGGCATGGTCCGGAGCCGCTCTGCCTTGTTTTATCCGCGG
CACTGCCGAGGGGCCGTGAAGATGCACAGCAGTGCATTAAGTAGCCTGGG
AATAACAGAGTTAGAGATAATCACCCGCCTGCTCATGGCAACGTTCGCAG
GTGCCTCCATTGGCTTTGAACGTCGGTATTCGGAGCGTCCGGCGGGACTG
CGCACGATGGCTCTAGTCTCCCTGGGCGCCGCAATCTTCACCATCATCAG
CCTGGGCATCCCGGGAGACAAATCGCGCATGGCGGCCTCGGTGGCCTCGG
GCGTGGGTTTCATCGGGGCCGGCGTCATCTCGCAGAATGGCTTCGAGGAC
TCCTCCAGGTCGGGCGGGCGGCGCATCCAGCAAGTGAACGGTTTGACCAC
GGCCACCGCCATCTGGGTCTCGGCGGCCCTGGGCGTCTCGAGCGGGGCGG
GACTAAACCTCCTGACCTTCATCGGGGCCGCGCTCGCTGTCTGCGTCCTG
CGCGTCGGACGCTTCACGCGCATGATCCGTTTACGCCGACGCGATTTGGC
CAGTCTGGCGGAGAGGGCCTTCAGTCTCAAGCCCGCCGCCCCCGCCGCAA
AGACTCCTATCCCCACGGGCACCTCCTCGGTCCCAGCGTCCAATCCGTCG
ACCAGGCAGGAGACCTTGATGGTGGCGGGTGGGGCGGGCGGAAGCTTGCT
TTCTTCTCCGCCCCCCGATTCCCCCTTCTTGGTGGGCACACGGCGGCCGA
ACTCGTCCACCCCAAGCGCCTCGTCAAGTTTCAGAGGAAAGGCTCCGTCG
AGGGGGGCCTCCCCAGCGAAGAGAGGAGGAGGCTCCTCGAAGGCCTCTTT
GAAGACAAATGGGTGCGAGGAGGGTGACGAGGCTCCGGGGATCCACGAGT
ATGCCGCAGGCGTACCCGGGCCCAGTGATTTGTGCGAGTCGACCAGTGGC
GCAG

Synonyms

Publications