EWM26610.1, cds4038 (CDS) Nannochloropsis gaditana

Overview
NameEWM26610.1
Unique Namecds4038
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:707467..708652 -
Alignment locationCM002462.1:706553..706593 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26610.1
Productmg(2 ) transport atpase protein c
Orig transcript idgnl|cribi|Naga_100001g65.8121.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:707467..708652 -
CM002462.1supercontigCM002462.1:706553..706593 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003416MgtCSapBSrpB_transpt
Homology
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|585108698|gb|EWM26610.1| (mg(2+) transport atpase protein c [Nannochloropsis gaditana])

HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query:    1 MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVSALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAVKMHSSALSSLGITELEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLRRRDLASLAERAFSLKPAAPAAKTPIPTGTSSVPASNPSTRQETLMVAGGAGGSLLSSPPPDSPFLVGTRRPNSSTPSASSSFRGKAPSRGASPAKRGGGSSKASLKTNGCEEGDEAPGIHEYAAGVPGPSDLCESTSGAVGLGIQKDKQRRS 408
            MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVSALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAVKMHSSALSSLGITELEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLRRRDLASLAERAFSLKPAAPAAKTPIPTGTSSVPASNPSTRQETLMVAGGAGGSLLSSPPPDSPFLVGTRRPNSSTPSASSSFRGKAPSRGASPAKRGGGSSKASLKTNGCEEGDEAPGIHEYAAGVPGPSDLCESTSGAVGLGIQKDKQRRS
Sbjct:    1 MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVSALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAVKMHSSALSSLGITELEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLRRRDLASLAERAFSLKPAAPAAKTPIPTGTSSVPASNPSTRQETLMVAGGAGGSLLSSPPPDSPFLVGTRRPNSSTPSASSSFRGKAPSRGASPAKRGGGSSKASLKTNGCEEGDEAPGIHEYAAGVPGPSDLCESTSGAVGLGIQKDKQRRS 408          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|553196642|ref|XP_005856391.1| (mg(2+) transport atpase protein c, partial [Nannochloropsis gaditana CCMP526] >gi|422292676|gb|EKU19978.1| mg(2+) transport atpase protein c, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0
Query:    1 MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVSALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAVKMHSSALSSLGITELEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLRRRDLASLAERAFSL 270
            MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVSALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAVKMHSSALSSLGITE EIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLRRRDLASLAERAFSL
Sbjct:    1 MGEARRSNHAHSQRACRLQGSRVWLAAGMLLSYAVLSVAFHLSPTRVTVSALVAHPKNSFPPSRRSLVPSMVCAARSRTNVGMVRSRSALFYPRHCRGAVKMHSSALSSLGITEFEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLRRRDLASLAERAFSL 270          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|299469901|emb|CBN76755.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.568 bits (327), Expect = 4.937e-29
Identity = 78/165 (47.27%), Postives = 106/165 (64.24%), Query Frame = 0
Query:  114 ELEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIIS-LGIPG--DKSRMAASVASGVGFIGAGVISQNGFEDSS---------RSG----GRRIQ------QVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRLR 256
            EL+I  RL++A   G  IG ERR S RPAG+RTM+LV+LGA  FT++S LG  G  D++R+AASVASGVGFIGAGVI+ +G E SS         R G    G  +       +V GLTTA+AIW++A LG++ GAGL  +  +GA L V +L++   T  ++ +
Sbjct:   29 ELQIFLRLVVAAMVGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQLGFVGKADQARVAASVASGVGFIGAGVITTSGKEASSMRESLNTRGRGGSNFPGTTVSMNDVDGEVKGLTTASAIWITAGLGMACGAGLLFIAMLGAGLTVGILKISEVTTSVQKK 193          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|516357269|ref|WP_017747302.1| (hypothetical protein [Scytonema hofmannii] >gi|1004813512|gb|KYC39476.1| hypothetical protein WA1_32685 [Scytonema hofmannii PCC 7110])

HSP 1 Score: 109.383 bits (272), Expect = 4.771e-25
Identity = 70/143 (48.95%), Postives = 91/143 (63.64%), Query Frame = 0
Query:  115 LEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGI---PGDK--SRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRV-GRFTR 251
            L I  RL +A F GA IG ER+ S +PAGLRT  LVS GAA+F++I L     P  +  SR+   +A+GVGFIGAG I +    +S+RS      ++ GLT+A AIWVS+ALG+++G GL  L  IGA L + VL V  RF R
Sbjct:   13 LNITFRLCLALFVGAIIGIERQLSNKPAGLRTHMLVSFGAALFSLIVLQFNVSPEAEPLSRVIQGIAAGVGFIGAGEILRQSSHESTRS------EIQGLTSAAAIWVSSALGIAAGCGLWQLGLIGALLCLLVLNVFKRFER 149          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|504777573|ref|WP_014964675.1| (MULTISPECIES: magnesium transporter MgtC [Nitrosopumilus] >gi|407047551|gb|AFS82303.1| MgtC/SapB transporter [Candidatus Nitrosopumilus sediminis])

HSP 1 Score: 108.227 bits (269), Expect = 9.392e-25
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 0
Query:  109 SLGITELEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRMAASVASGVGFIGAG-VISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTR 251
              GI + EI+ +LL+A   GA IGFER    RPAGLRT  LVSLGA IFT+ SL    + +R+AA + +G+GF+GAG +I+  G              V G+T+A  +WV A +G+S G G   +  + + L   +L++GRF +
Sbjct:    4 EFGIVDFEIVLKLLIAVGLGAMIGFERELKHRPAGLRTHMLVSLGATIFTVSSLSFDVEPARIAAGIVAGIGFLGAGNIIAHKG-------------HVQGITSAATLWVVAGIGLSVGIGEYFIAVVSSVLIFAILQLGRFEK 134          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|1121322887|ref|WP_073632999.1| (hypothetical protein [Scytonema sp. HK-05] >gi|1115294466|gb|OKH57480.1| hypothetical protein NIES2130_19610 [Scytonema sp. HK-05] >gi|1210126726|dbj|BAY45840.1| MgtC/SapB transporter [Scytonema sp. HK-05])

HSP 1 Score: 107.457 bits (267), Expect = 2.469e-24
Identity = 65/140 (46.43%), Postives = 88/140 (62.86%), Query Frame = 0
Query:  115 LEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDK------SRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGR 248
            L I  RL +A   GA IG ER+   +PAGLRT  LVS GAA+FT+ISL    D+      SR+   +A+GVGF+GAG I +   ++S+RS      +++GLT+A AIWV AALG+++G G   L  IGA L+  VL V +
Sbjct:   13 LNITFRLCLALLVGAIIGIERQIRHKPAGLRTHMLVSFGAALFTLISLATGTDQPNADAVSRVIQGIAAGVGFLGAGEILRESSQESARS------KIHGLTSAAAIWVCAALGIAAGCGWWQLGLIGALLSFLVLNVFK 146          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|1197739069|ref|WP_086688838.1| (hypothetical protein [Nostoc sp. T09] >gi|1196007254|gb|OUL29375.1| hypothetical protein BV372_23290 [Nostoc sp. T09])

HSP 1 Score: 105.916 bits (263), Expect = 9.097e-24
Identity = 65/138 (47.10%), Postives = 84/138 (60.87%), Query Frame = 0
Query:  115 LEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDK------SRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRV 246
            L +  RL MA   G  IG ER+   +PAGLRT  LVSLG+A+FT+I L   G K      SR+   +A+GVGF+GAG I +   ++  R       +V+GLT+A AIWVSAALG+++G GL  L  IGA L   VL V
Sbjct:    7 LNVTFRLCMALLCGGIIGLERQMRHKPAGLRTHMLVSLGSALFTVIPLHTVGLKPGADALSRVIQGIATGVGFLGAGEILRESSQELKRP------EVHGLTSAAAIWVSAALGIAAGCGLWQLALIGALLTFLVLNV 138          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|889975459|ref|WP_048869447.1| (protein SrpB [Scytonema tolypothrichoides] >gi|750922280|gb|KIJ82099.1| protein SrpB [Scytonema tolypothrichoides VB-61278])

HSP 1 Score: 105.916 bits (263), Expect = 9.110e-24
Identity = 63/138 (45.65%), Postives = 86/138 (62.32%), Query Frame = 0
Query:  115 LEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDK------SRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRV 246
            L I  RL +A   GA IG ER+   +PAGLRT  LVS GAA+FT++SL I  DK      SR+   +A+GVGF+G G I +   ++S+R+      ++ GLT+A AIWV A LG+++G GL  L  I A L++ VL V
Sbjct:   13 LNITFRLCLALLVGAIIGIERQIRHKPAGLRTHMLVSFGAALFTLVSLIISADKPNGDALSRVIQGIAAGVGFLGGGEILRESSQESART------EIKGLTSAAAIWVCAGLGIAAGCGLWQLGLIAALLSLLVLNV 144          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|1096250418|ref|WP_071188591.1| (hypothetical protein [Trichormus sp. NMC-1])

HSP 1 Score: 105.531 bits (262), Expect = 1.178e-23
Identity = 69/147 (46.94%), Postives = 92/147 (62.59%), Query Frame = 0
Query:  115 LEIITRLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDK------SRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRMIRL 255
            L I  RL +A   G  IG ER+   +PAGLRT  LVSLG+++FTII++ + G++      SR+   +ASGVGF+GAG I +   E S +S    I   +GLT+A AIWVSAALG++SG GL  L  IGA   V VL +  F ++ RL
Sbjct:   13 LNICFRLSLALIIGGIIGLERQLRNKPAGLRTHMLVSLGSSVFTIIAIQVGGEQISADALSRVIQGIASGVGFLGAGEILR---ESSQQSNSLAI---HGLTSAAAIWVSAALGIASGCGLWQLGLIGAVFTVVVLHI--FKKVERL 151          
BLAST of EWM26610.1 vs. NCBI_GenBank
Match: gi|654619230|ref|WP_028083727.1| (protein SrpB [Dolichospermum circinale])

HSP 1 Score: 105.531 bits (262), Expect = 1.279e-23
Identity = 63/139 (45.32%), Postives = 88/139 (63.31%), Query Frame = 0
Query:  120 RLLMATFAGASIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDK------SRMAASVASGVGFIGAGVISQNGFEDSSRSGGRRIQQVNGLTTATAIWVSAALGVSSGAGLNLLTFIGAALAVCVLRVGRFTRM 252
            RL ++ F GA IG ER+   +PAGLRT  LVSLG+++FT+I++   G +      SR+   +A+GVGF+GAG I +   E S         +V+GLT+A AIWVSAALG+++G GL  L  IGA L V +L +  F R+
Sbjct:   18 RLFLSLFIGAIIGLERQIKNKPAGLRTHMLVSLGSSVFTLITIQTGGTQLSADAISRVVQGIAAGVGFLGAGEILRQSSETSKSP------EVHGLTSAAAIWVSAALGIAAGCGLWQLGLIGAVLTVIILHI--FKRL 148          
The following BLAST results are available for this feature:
BLAST of EWM26610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108698|gb|EWM26610.1|0.000e+0100.00mg(2+) transport atpase protein c [Nannochloropsis... [more]
gi|553196642|ref|XP_005856391.1|0.000e+099.63mg(2+) transport atpase protein c, partial [Nannoc... [more]
gi|299469901|emb|CBN76755.1|4.937e-2947.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|516357269|ref|WP_017747302.1|4.771e-2548.95hypothetical protein [Scytonema hofmannii] >gi|100... [more]
gi|504777573|ref|WP_014964675.1|9.392e-2540.97MULTISPECIES: magnesium transporter MgtC [Nitrosop... [more]
gi|1121322887|ref|WP_073632999.1|2.469e-2446.43hypothetical protein [Scytonema sp. HK-05] >gi|111... [more]
gi|1197739069|ref|WP_086688838.1|9.097e-2447.10hypothetical protein [Nostoc sp. T09] >gi|11960072... [more]
gi|889975459|ref|WP_048869447.1|9.110e-2445.65protein SrpB [Scytonema tolypothrichoides] >gi|750... [more]
gi|1096250418|ref|WP_071188591.1|1.178e-2346.94hypothetical protein [Trichormus sp. NMC-1][more]
gi|654619230|ref|WP_028083727.1|1.279e-2345.32protein SrpB [Dolichospermum circinale][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4048rna4048Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications