rna4026, rna4026 (mRNA) Nannochloropsis gaditana

Overview
Namerna4026
Unique Namerna4026
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length829
Alignment locationCM002462.1:653318..656026 -

Link to JBrowse

Properties
Property NameValue
Productbifunctional aspartokinase i homoserine dehydrogenase i
Orig transcript idgnl|cribi|Naga_100001g91.8107.mrna
Orig protein idgnl|cribi|Naga_100001g91.8107
GeneAK/HSDH
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:653318..656026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
AK/HSDHgene3872Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26596.1cds4016Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4026rna4026-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4026 ID=rna4026|Name=rna4026|organism=Nannochloropsis gaditana|type=mRNA|length=829bp
CTCTCATCCTCTCTTAATTTCATCGCATGCACGGCACAGACGAGGATGAG
AGCGCATGCCGTCCTTTTACTTGCCATGGCTACAGCCGTACAGGCCTTTT
GGCCATCGTTTATTGCGGTGAAGCAGAGCTTTTGCAGGAGGAAGGAGGCG
CTGACACTGTGTGCTTTCAAGGGAACTGCCGATCGTCGTGACCACATCCG
CAGCCAAGTAGCCCTCGGAGGGCTTGGCGCTCTCCTGCTGGCAGCAAATC
CTCCACTGGCTTTGGCCGACTCCACTGGCAAATACAGCACCAAACAGACC
GCTAAAAAGCGATATCTGCCCCGGGTGCGCAAGGGCGTGGCCAAATTTCA
GGCTTTAGGCGAGACCTTGGACAATCCCGAGACAATCAAGGCTTTCAATC
AGTACGTGGAAGACAGCTTAGCCGCGGCTCTTGCTTTGTACGGCTCCTCT
ACGCGCATTGGTGAGCTACCGGATCCAAAATCCCGCACCGTGGAGAAAGA
GGCTGAGGATTTCGTGAAGGAGGTAAACGCCATGGCTAAGGGGGGTGACG
TGAAAGCCTCATACGAAGGTGCTAAAACTGCACTGGCTGCGTACCTCGCG
GGCACTAAGCTAGAGCCTTTAAGTGATCCAGTTTACAAAGACATGGATAG
ATAAGTGGCAGGGAATAGCCAGAGAGAGAGAGTACGTCGGTGAGGATCGA
AGCTTCGTATTTGTGTAATTGTATTTCGAATTGCGCACCCCACACCGGAT
GGCGCGATGGTGTGACGGCACATACAGCCTTGATGTGGGCTTTAAAAGGA
ACAATCAAATCGAGTGGTAGGAAGCACGC
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protein sequence of rna4026

>rna4026-protein ID=rna4026-protein|Name=rna4026|organism=Nannochloropsis gaditana|type=polypeptide|length=902bp
MPDRRIGDTTRWCVYKFGGTSVASAECYQTVRDIILTAQESTPRMAVVVS
AMGGKPKVTDLLIETVMLAAKGDVEGYEQMLHLVREKHLACATQLFSPAG
AQFYETELDEDIRNLRDILRAVSFMRYSGEKIIELVSGHGEIWSARMLTR
LFRDGGHDFMFVDARKVLFVDESGESGPDVMWERSKGALDDYMAQSPGAC
PVITGFVASTVEGVVTTLKRDGSDYSASIFGRLLNATGITIWTDVDGVLS
ADPRRVPEAKVLADVSYSEAMELAYFGAKVIHPKTMTPAVAASIPIFIRN
TFNPSFSGTRIYVSSASTMDRDKCVCGFSTVDNMALLNLEGSGMIGVPGI
ANRLFGAIQQTGISVSLIAQASSEYSISFATRQCDADAAAKAVTDEFFRE
FKSHLMNKVDIIRPCSIIAAVGDGMSNTKGAAGKFFKALGNAGVNVLAIS
QGSSERIISAVVKGSDSTKSLRAVHSAFLLSNQVISVGLVGRGKVAKAMV
EVLRAQADMLYGRFGTEFHLRAVMDSTGMLLSSTGPTLGLEGLDAAFNAY
KLPADLKAFTKHVRAEHLPHAIIIDCSDAEEVAREHPGWLEQNIHVVTAN
KKGLCGSMSLYNAILRQRKVKQHNYMYEVTVGGGLRIITSLQAMLIGGDS
ILRLEGALSASMNYVMGLISPVPPCRVPSLDSNGRSSSISSSMSNSSGSG
GLRRSYSSLLNGHTHETAKTPLSLSEAVSEASRLEVFERDPLNDLNGVEM
AQKLLVLAREMGLPLRLEDVKIETLVPKDTPLDEIHRYNEEVAARVTAAR
IRGSVLRYVGCINEAGEAEIGIQEVPFEHPFATVRGAGYCFRIFSAFHSP
DPITIQGTIGLPKATAAGLFSDLLFVAQRLGATDKGHTVQGVRVLSDSLI
EA
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mRNA from alignment at CM002462.1:653318..656026-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4026 ID=rna4026|Name=rna4026|organism=Nannochloropsis gaditana|type=mRNA|length=2709bp|location=Sequence derived from alignment at CM002462.1:653318..656026- (Nannochloropsis gaditana)
ATGCCGGACAGAAGAATAGGAGATACAACTCGGTGGTGTGTTTACAAATT TGGGGGCACGAGTGTGGCAAGTGCAGAATGCTATCAAACTGTGCGGGACA TCATCTTGACGGCCCAAGAAAGCACGCCCAGGATGGCCGTGGTCGTGTCG GCCATGGGGGGGAAGCCGAAAGTGACGGATTTACTCATTGAGACCGTCAT GCTTGCGGCCAAGGGAGACGTCGAAGGCTATGAGCAGATGCTGCACCTAG TCCGAGAGAAGCACCTTGCATGCGCAACGCAGCTCTTCTCGCCGGCGGGG GCTCAATTTTATGAGACGGAGCTGGACGAGGACATTCGAAATTTGCGAGA TATTTTGCGAGCTGTCTCTTTCATGCGGTACAGCGGAGAAAAAATAATAG AACTCGTCTCCGGACACGGAGAGATATGGTCCGCCCGCATGTTGACGCGG CTCTTTCGGGACGGAGGGCACGACTTCATGTTCGTGGATGCCCGGAAGGT GCTCTTTGTGGACGAATCGGGCGAGAGCGGACCTGACGTGATGTGGGAGC GGTCCAAGGGGGCGTTAGATGACTACATGGCCCAGAGTCCGGGCGCCTGT CCGGTCATCACGGGCTTCGTCGCCTCCACGGTGGAGGGCGTGGTCACGAC ATTGAAGCGGGACGGCAGCGACTACTCAGCCAGCATTTTCGGCCGCCTCT TGAACGCCACGGGCATCACCATCTGGACCGACGTGGACGGCGTCCTTTCC GCCGATCCTCGCCGTGTCCCGGAGGCCAAGGTCCTCGCAGACGTGTCCTA CAGCGAGGCCATGGAGCTTGCTTATTTTGGCGCCAAAGTCATTCACCCGA AGACGATGACGCCCGCCGTGGCGGCCTCCATCCCCATTTTTATCCGCAAC ACTTTCAACCCGAGCTTCTCCGGCACCCGCATCTACGTCTCCTCCGCCTC CACCATGGACCGGGACAAGTGCGTCTGCGGCTTTTCCACGGTGGACAACA TGGCGCTCCTGAACCTGGAAGGCTCGGGGATGATCGGGGTCCCCGGCATC GCCAACCGGCTCTTCGGCGCCATCCAGCAGACAGGCATCTCCGTATCACT CATCGCCCAGGCGAGCTCGGAGTACTCCATCTCCTTCGCCACCCGCCAGT GCGACGCGGACGCGGCGGCCAAGGCGGTCACGGACGAGTTCTTCCGGGAG TTCAAGTCCCACCTCATGAACAAGGTGGACATCATCCGGCCCTGCTCCAT CATCGCCGCCGTAGGGGATGGCATGAGCAACACCAAGGGGGCGGCGGGGA AGTTCTTCAAGGCCCTGGGCAACGCGGGCGTTAACGTGCTGGCCATCTCG CAGGGGTCCTCGGAGAGAATCATCTCCGCCGTGGTCAAGGGCTCGGACTC GACTAAGTCCCTCCGGGCCGTCCACTCCGCCTTTTTGCTCTCCAACCAAG TCATCAGCGTCGGCCTGGTGGGCCGCGGGAAGGTGGCCAAGGCGATGGTG GAGGTGCTTCGGGCCCAAGCGGACATGCTCTACGGCCGCTTTGGCACCGA GTTCCACCTCCGGGCAGTGATGGACTCGACGGGCATGCTCTTGAGCAGCA CTGGCCCCACCCTGGGTCTAGAGGGTCTAGATGCGGCCTTCAACGCATAC AAGCTTCCCGCCGACTTGAAAGCTTTCACGAAGCACGTGCGGGCGGAGCA CTTGCCGCACGCGATCATCATCGACTGCTCCGACGCCGAGGAGGTGGCCA GAGAGCACCCGGGCTGGCTTGAACAGAACATCCATGTGGTTACGGCCAAC AAGAAAGGGCTCTGCGGGAGTATGTCGCTCTATAATGCGATCTTGCGGCA GCGGAAAGTGAAGCAGCACAACTACATGTACGAGGTCACCGTGGGGGGCG GGCTCCGGATCATCACCTCCTTGCAAGCCATGCTGATCGGCGGGGACAGC ATCCTCCGCCTCGAGGGCGCCCTCTCGGCCTCCATGAACTACGTGATGGG CTTGATCTCCCCCGTGCCCCCCTGTCGGGTACCCTCCTTGGACAGCAACG GCCGCAGCAGCAGCATCAGCAGCAGCATGAGCAACAGCAGCGGCAGCGGG GGGCTTCGACGAAGCTACTCGAGCTTGCTGAACGGGCACACGCACGAGAC AGCGAAGACACCCCTCAGCCTCTCAGAGGCCGTCTCGGAAGCCTCGCGGC TGGAAGTGTTCGAGCGTGACCCCCTGAACGATCTGAACGGCGTCGAGATG GCGCAGAAGCTCCTGGTGCTGGCCCGCGAGATGGGCCTGCCCTTGCGCCT GGAGGACGTGAAGATCGAGACACTCGTGCCCAAGGACACTCCTCTAGACG AGATCCACCGGTACAACGAGGAGGTGGCGGCGCGCGTGACGGCGGCGCGA ATCCGGGGTTCGGTGTTGCGGTACGTTGGCTGCATCAACGAGGCGGGCGA GGCCGAGATCGGCATCCAGGAGGTTCCCTTCGAGCACCCCTTTGCCACCG TTCGCGGCGCCGGCTACTGCTTCCGCATCTTCTCCGCCTTCCACAGCCCC GACCCCATCACCATCCAGGGCACCATCGGACTCCCCAAGGCCACGGCGGC CGGCCTCTTCTCGGACTTGCTCTTCGTCGCCCAACGCCTGGGGGCCACGG ACAAGGGGCACACGGTCCAGGGGGTCCGGGTCCTGAGTGACTCCCTCATC GAGGCGTAG
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Coding sequence (CDS) from alignment at CM002462.1:653318..656026-

>rna4026 ID=rna4026|Name=rna4026|organism=Nannochloropsis gaditana|type=CDS|length=2709bp|location=Sequence derived from alignment at CM002462.1:653318..656026- (Nannochloropsis gaditana)
ATGCCGGACAGAAGAATAGGAGATACAACTCGGTGGTGTGTTTACAAATT
TGGGGGCACGAGTGTGGCAAGTGCAGAATGCTATCAAACTGTGCGGGACA
TCATCTTGACGGCCCAAGAAAGCACGCCCAGGATGGCCGTGGTCGTGTCG
GCCATGGGGGGGAAGCCGAAAGTGACGGATTTACTCATTGAGACCGTCAT
GCTTGCGGCCAAGGGAGACGTCGAAGGCTATGAGCAGATGCTGCACCTAG
TCCGAGAGAAGCACCTTGCATGCGCAACGCAGCTCTTCTCGCCGGCGGGG
GCTCAATTTTATGAGACGGAGCTGGACGAGGACATTCGAAATTTGCGAGA
TATTTTGCGAGCTGTCTCTTTCATGCGGTACAGCGGAGAAAAAATAATAG
AACTCGTCTCCGGACACGGAGAGATATGGTCCGCCCGCATGTTGACGCGG
CTCTTTCGGGACGGAGGGCACGACTTCATGTTCGTGGATGCCCGGAAGGT
GCTCTTTGTGGACGAATCGGGCGAGAGCGGACCTGACGTGATGTGGGAGC
GGTCCAAGGGGGCGTTAGATGACTACATGGCCCAGAGTCCGGGCGCCTGT
CCGGTCATCACGGGCTTCGTCGCCTCCACGGTGGAGGGCGTGGTCACGAC
ATTGAAGCGGGACGGCAGCGACTACTCAGCCAGCATTTTCGGCCGCCTCT
TGAACGCCACGGGCATCACCATCTGGACCGACGTGGACGGCGTCCTTTCC
GCCGATCCTCGCCGTGTCCCGGAGGCCAAGGTCCTCGCAGACGTGTCCTA
CAGCGAGGCCATGGAGCTTGCTTATTTTGGCGCCAAAGTCATTCACCCGA
AGACGATGACGCCCGCCGTGGCGGCCTCCATCCCCATTTTTATCCGCAAC
ACTTTCAACCCGAGCTTCTCCGGCACCCGCATCTACGTCTCCTCCGCCTC
CACCATGGACCGGGACAAGTGCGTCTGCGGCTTTTCCACGGTGGACAACA
TGGCGCTCCTGAACCTGGAAGGCTCGGGGATGATCGGGGTCCCCGGCATC
GCCAACCGGCTCTTCGGCGCCATCCAGCAGACAGGCATCTCCGTATCACT
CATCGCCCAGGCGAGCTCGGAGTACTCCATCTCCTTCGCCACCCGCCAGT
GCGACGCGGACGCGGCGGCCAAGGCGGTCACGGACGAGTTCTTCCGGGAG
TTCAAGTCCCACCTCATGAACAAGGTGGACATCATCCGGCCCTGCTCCAT
CATCGCCGCCGTAGGGGATGGCATGAGCAACACCAAGGGGGCGGCGGGGA
AGTTCTTCAAGGCCCTGGGCAACGCGGGCGTTAACGTGCTGGCCATCTCG
CAGGGGTCCTCGGAGAGAATCATCTCCGCCGTGGTCAAGGGCTCGGACTC
GACTAAGTCCCTCCGGGCCGTCCACTCCGCCTTTTTGCTCTCCAACCAAG
TCATCAGCGTCGGCCTGGTGGGCCGCGGGAAGGTGGCCAAGGCGATGGTG
GAGGTGCTTCGGGCCCAAGCGGACATGCTCTACGGCCGCTTTGGCACCGA
GTTCCACCTCCGGGCAGTGATGGACTCGACGGGCATGCTCTTGAGCAGCA
CTGGCCCCACCCTGGGTCTAGAGGGTCTAGATGCGGCCTTCAACGCATAC
AAGCTTCCCGCCGACTTGAAAGCTTTCACGAAGCACGTGCGGGCGGAGCA
CTTGCCGCACGCGATCATCATCGACTGCTCCGACGCCGAGGAGGTGGCCA
GAGAGCACCCGGGCTGGCTTGAACAGAACATCCATGTGGTTACGGCCAAC
AAGAAAGGGCTCTGCGGGAGTATGTCGCTCTATAATGCGATCTTGCGGCA
GCGGAAAGTGAAGCAGCACAACTACATGTACGAGGTCACCGTGGGGGGCG
GGCTCCGGATCATCACCTCCTTGCAAGCCATGCTGATCGGCGGGGACAGC
ATCCTCCGCCTCGAGGGCGCCCTCTCGGCCTCCATGAACTACGTGATGGG
CTTGATCTCCCCCGTGCCCCCCTGTCGGGTACCCTCCTTGGACAGCAACG
GCCGCAGCAGCAGCATCAGCAGCAGCATGAGCAACAGCAGCGGCAGCGGG
GGGCTTCGACGAAGCTACTCGAGCTTGCTGAACGGGCACACGCACGAGAC
AGCGAAGACACCCCTCAGCCTCTCAGAGGCCGTCTCGGAAGCCTCGCGGC
TGGAAGTGTTCGAGCGTGACCCCCTGAACGATCTGAACGGCGTCGAGATG
GCGCAGAAGCTCCTGGTGCTGGCCCGCGAGATGGGCCTGCCCTTGCGCCT
GGAGGACGTGAAGATCGAGACACTCGTGCCCAAGGACACTCCTCTAGACG
AGATCCACCGGTACAACGAGGAGGTGGCGGCGCGCGTGACGGCGGCGCGA
ATCCGGGGTTCGGTGTTGCGGTACGTTGGCTGCATCAACGAGGCGGGCGA
GGCCGAGATCGGCATCCAGGAGGTTCCCTTCGAGCACCCCTTTGCCACCG
TTCGCGGCGCCGGCTACTGCTTCCGCATCTTCTCCGCCTTCCACAGCCCC
GACCCCATCACCATCCAGGGCACCATCGGACTCCCCAAGGCCACGGCGGC
CGGCCTCTTCTCGGACTTGCTCTTCGTCGCCCAACGCCTGGGGGCCACGG
ACAAGGGGCACACGGTCCAGGGGGTCCGGGTCCTGAGTGACTCCCTCATC
GAGGCGTAG
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Synonyms
Publications