rna4011, rna4011 (mRNA) Nannochloropsis gaditana

Overview
Namerna4011
Unique Namerna4011
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2340
Alignment locationCM002462.1:624395..625001 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g105.8140.mrna
Orig protein idgnl|cribi|Naga_100001g105.8140
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:624395..625001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g105gene3859Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4011rna4011-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26629.1cds4001Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4011 ID=rna4011|Name=rna4011|organism=Nannochloropsis gaditana|type=mRNA|length=2340bp
ATGTTGATGCCCCAAACATTCATGCTGCGAGCCCTTTCACGCCGCCTCAA
CCGTAAAGCTGTTGACTGCGGTCAATTTAAATCATCGCAATTGTTTCGGA
TGTTAATCATGGGGAATGAGGGCGGGAGGAGACCGCTGTCATCTTTGTCG
TCCTCCTCGATGACCTACCCGGAGGGCTGGGCTGCTGCGGCGGAGAAGGA
ATTGAAAGGAAAAAAGCCACTGGACTCGCTCTTATTCCACACTCCCGAAG
AGATCACTATAAAGCCGATATATGGAGCGCACGACCTAAAGGGCATCGAG
ATTGATCAAGCTCCGGGTGCATTTCCATATTGTCGTGGCCCCTATGCCAC
GATGTACACGTCGCGGCCGTGGACCATCCGGCAGTACGCAGGCTTCTCGA
CTGCTGAAGAGTCCAACGCCTTTTATCGCAAGAACCTGGAGGCTGGTCAG
CAGGGATTGAGCGTGGCTTTCGACCTTGCCACTCACAGAGGCTATGATTC
CGATCACCCGCGCGTGACTGGAGACGTTGGGATGGCGGGCGTACCCATTG
ACACGGTCGAAGACATGAAGATCCTTTTCGACGGCATCCCGCTGGATCGC
ATGTCGGTCTCCATGACCATGAACGGAGCCGTCCTCCCCATCCTGGCCTT
TTACATAGTGACCGCCGAGGAGCAAGGCGTGCAGCTGGAGCAACTGAAGG
GCACTATCCAAAATGATATTCTCAAGGAGTTCATGGTCCGGAACACGTAC
ATTTATCCGCCGACCCCCTCCATGCGCATCATCTCGGACATTTTTGGGTA
CACTACCGACTTCATGCCGAAATACAACTCTATTTCCATCTCGGGATACC
ACATGCAAGAGGCTGGGGCCGACGCTAAGCTGGAACTGGCCTTTACCATC
GCCGACGGTATCGAGTACATTCGGGCCGCCCAACAGGCGGGCTTGGACGT
GGACAAATTTGCCCCACGCCTCTCCTTCTTCTTCGGCATCGGCATGAACC
TGTACATGGAGGTTGCCAAGCTCCGTGCGGCTCGGAAGCTCTGGGCTTCG
CTCGTCACCAAATATTTTGCCCCGAAGAACAGAAAAAGCACGATTCTTAG
GACGCACTGTCAGACATCCGGGTACTCGCTGACGGAGCAGGATCCCTACA
ACAACATCGTTCGTACGACTGTGGAGGCCATGGCGGCAGTCATGGGCGGG
ACACAATCCCTTCACACCAACTCCTTCGACGAGGCCATGGGCCTGCCCAC
AGAGTTCTCCGCTCGGATTGCGAGAAACACCCAGCTCATTCTCCAAGAGG
AAAGCCACATCACTAGGGTGGCGGACCCCTGGGGTGGATCCTACATGATG
GAGGCGCTGACACAAGACCTCTACGACGGCGCGATGAAGGTCTTTGAGGA
GGTGGAAGGGCTGGGCGGCATGACCAAGGCCATCGAGAGCGGCATGGCAA
AGCTCCGAATCGAGGAGAGCGCGACCAAGAAGCAGGCGCGCATTGATTCC
GGGACTGAGACGATCGTGGGTGTGAACAAGTATCGTCTCGCAGAGGAGCA
GCAGTTGGACGTGCTCAGCATAGACAATTCGGTCGTGCGCCAGAAGCAAA
TAGAGCGTCTGGAGCGCGTGAGGGCCGAGCGCGACACAGGACGCGTGGAT
GCGGCCCTAGCCAAGCTCACGGAATCCGCAAGTTTACCTCGGAACCAGTC
AACTTCAAAGGGCTCGCACCCGCTCAATCTCCTCGCGCTTTCAGTCCAGG
CCGCCCGGGAACGCGCCACTTTGGGCGAGATCTCGAATGCCTTGGAGGTA
AAATGGGGTCGGCACACCCCCTCCAGCGCCGTGGTCCAAGGGGCCTACAT
GGCTACTTTCAACAAGTCTGTGGCAGAAAAAGAGTATAGCATGGTGCTGG
CCCAAGTAGAGGCATTTGCTGAGGAGGAGGGGCGTCGGCCTCGGATCCTG
GTCGCCAAGATGGGTCAAGACGGGCACGACCGCGGGGCTAAGGTGATTGC
CAGCGGCTTCAGCGATCTGGGTTACGACGTGGACGTAGGCCCTCTATTCT
CCACACCGGAGGAGGCGGCGCAACAGGCCATTGACGCGGACGTGCATGTA
GTGGGTGTCAGCTCCCAGGCGGCGGGACACAAGACGTTGGTCCCGGCCCT
GGTCAAAGCCCTGGCGGAGCAAGGGGCTGACGACATCTTGGTGGTGTGCG
GGGGGGTAATTCCTTCTCAAGACTACGACGTCTTGTACAAGGCAGGCGCT
TCTGCCATCTTTGGGCCTGGCACGCGTATAACTACCGCCGCTTTGCAGGT
TTTGAACAAGATCAAAGAGAAGCGACGCAAATCAGCGTAG
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protein sequence of rna4011

>rna4011-protein ID=rna4011-protein|Name=rna4011|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MIKSWERPTNIDASTVTCNPSMLLRNFPSDKNMHHGERTTVSIYRLTYRN
LGVHSIVEALKPLCSPRFPRSRWCCRCRESQHKAVPKGVSFAHRTHIIIF
GLLVMISRLKLLVDVFIPCWLKFFNPQILIKFLGFPQRGREHSRCECHVY
DFASTFGTHGRRHGH
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mRNA from alignment at CM002462.1:624395..625001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4011 ID=rna4011|Name=rna4011|organism=Nannochloropsis gaditana|type=mRNA|length=607bp|location=Sequence derived from alignment at CM002462.1:624395..625001+ (Nannochloropsis gaditana)
ATGATTAAATCTTGGGAGCGACCCACTAATATTGACGCATCGACAGTTAC
CTGTAATCCTTCAATGCTATTGCGTAATTTCCCATCTGACAAAAACATGC
ACCACGGCGAGCGTACAACTGTAAGTATATACCGACTGACGTATCGGAAT
CTTGGCGTTCACTCGATTGTAGAAGCTTTAAAGCCTCTGTGCAGTCGTCA
GCGCATTCCTGATATCGCCTGATTCTGAAGAAGCATAAAGCGCGATTTCC
AAGGAGCAGGTGGTGCTGTCGGTGTCGAGAGTCACAGCACAAAGCCGTAG
TATAGGCATTTATGGCTGATTCATAGTCGCCTGCTCTGCACATATTGTCA
CCCCGAGCCTTTAGCCAAAAGGGGTCTCTTTCGCTCACCGAACGCATATC
ATCATATTTGGGCTCCTCGTTATGATTTCGCGCCTCAAGCTTTTGGTGGA
CGTTTTCATTCCATGCTGGCTTAAATTTTTTAATCCACAGATCCTCATCA
AGTTTCTTGGATTCCCGCAAAGGGGTCGGGAACATTCGCGGTGTGAATGT
CACGTTTATGACTTTGCGTCCACTTTCGGAACGCACGGCAGGCGCCACGG
GCACTGA
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Coding sequence (CDS) from alignment at CM002462.1:624395..625001+

>rna4011 ID=rna4011|Name=rna4011|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at CM002462.1:624395..625001+ (Nannochloropsis gaditana)
ATGATTAAATCTTGGGAGCGACCCACTAATATTGACGCATCGACAGTTAC
CTGTAATCCTTCAATGCTATTGCGTAATTTCCCATCTGACAAAAACATGC
ACCACGGCGAGCGTACAACTGTAAGTATATACCGACTGACGTATCGGAAT
CTTGGCGTTCACTCGATTGTAGAAGCTTTAAAGCCTCTGTGCAGTCCGCG
ATTTCCAAGGAGCAGGTGGTGCTGTCGGTGTCGAGAGTCACAGCACAAAG
CCGTACCAAAAGGGGTCTCTTTCGCTCACCGAACGCATATCATCATATTT
GGGCTCCTCGTTATGATTTCGCGCCTCAAGCTTTTGGTGGACGTTTTCAT
TCCATGCTGGCTTAAATTTTTTAATCCACAGATCCTCATCAAGTTTCTTG
GATTCCCGCAAAGGGGTCGGGAACATTCGCGGTGTGAATGTCACGTTTAT
GACTTTGCGTCCACTTTCGGAACGCACGGCAGGCGCCACGGGCACTGAAT
GATTAAATCTTGGGAGCGACCCACTAATATTGACGCATCGACAGTTACCT
GTAATCCTTCAATGCTATTGCGTAATTTCCCATCTGACAAAAACATGCAC
CACGGCGAGCGTACAACTGTAAGTATATACCGACTGACGTATCGGAATCT
TGGCGTTCACTCGATTGTAGAAGCTTTAAAGCCTCTGTGCAGTCCGCGAT
TTCCAAGGAGCAGGTGGTGCTGTCGGTGTCGAGAGTCACAGCACAAAGCC
GTACCAAAAGGGGTCTCTTTCGCTCACCGAACGCATATCATCATATTTGG
GCTCCTCGTTATGATTTCGCGCCTCAAGCTTTTGGTGGACGTTTTCATTC
CATGCTGGCTTAAATTTTTTAATCCACAGATCCTCATCAAGTTTCTTGGA
TTCCCGCAAAGGGGTCGGGAACATTCGCGGTGTGAATGTCACGTTTATGA
CTTTGCGTCCACTTTCGGAACGCACGGCAGGCGCCACGGGCACTGAATGA
TTAAATCTTGGGAGCGACCCACTAATATTGACGCATCGACAGTTACCTGT
AATCCTTCAATGCTATTGCGTAATTTCCCATCTGACAAAAACATGCACCA
CGGCGAGCGTACAACTGTAAGTATATACCGACTGACGTATCGGAATCTTG
GCGTTCACTCGATTGTAGAAGCTTTAAAGCCTCTGTGCAGTCCGCGATTT
CCAAGGAGCAGGTGGTGCTGTCGGTGTCGAGAGTCACAGCACAAAGCCGT
ACCAAAAGGGGTCTCTTTCGCTCACCGAACGCATATCATCATATTTGGGC
TCCTCGTTATGATTTCGCGCCTCAAGCTTTTGGTGGACGTTTTCATTCCA
TGCTGGCTTAAATTTTTTAATCCACAGATCCTCATCAAGTTTCTTGGATT
CCCGCAAAGGGGTCGGGAACATTCGCGGTGTGAATGTCACGTTTATGACT
TTGCGTCCACTTTCGGAACGCACGGCAGGCGCCACGGGCACTGA
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Synonyms
Publications