EWM26602.1, cds3998 (CDS) Nannochloropsis gaditana

Overview
NameEWM26602.1
Unique Namecds3998
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:616141..617472 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26602.1
Productribosome assembly protein 4
Orig transcript idgnl|cribi|Naga_100001g110.8113.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:616141..617472 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|585108690|gb|EWM26602.1| (ribosome assembly protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0
Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0
Query:    1 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG 443
            MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG
Sbjct:    1 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG 443          
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|553194672|ref|XP_005856011.1| (hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526] >gi|422293047|gb|EKU20348.1| hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 481.871 bits (1239), Expect = 1.406e-168
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGV 233
            MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGV
Sbjct:    2 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGV 234          
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|298709315|emb|CBJ31251.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 2.324e-30
Identity = 113/413 (27.36%), Postives = 184/413 (44.55%), Query Frame = 0
Query:   19 ERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFA-LKTEFAHPGPDQQIYALLWLETTELNSQPS------LMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLD-RRSARTVARVQGA-EGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVP-----------PDLTNCVGSEAINAPMVMTWSTDTTLRFFDLN--TGNSAA--RHVVCHPRFPILTCAFRPGHRQLVLGGGTG 407
            E   S A + C    +       H  R FD  F  +     SAS+    ++WD++ SG+  K L+      EVLR  W                    N +   ATG+A G VR++ +  +    R+     D+ ++      L+      G D Q+Y+  ++      + PS      L+TA+D  ++ WDVE +   ++ A   V   +  G        +RNP ++ ++FDA   +  PG G  V+ VALSDG+VRV D  +     A ++G  + HLT+L  +    +L +CGG G +  +DTRT++ R+VL GH RPV+GAA                       +     ++++WS+D T+  +D    TG++ A    +     FP+ +C+     R+  L GG G
Sbjct:    7 EERKSVALAACFNDKRCHRRLIGHRARTFDFQFHPTEDAAISASEDGTARVWDLS-SGKCAKSLEGHNKKHEVLRACWA--------------PPGAANDSVSVATGSADGIVRLWGI--RHGDGRDEKSGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSIGG--------ERNPDDLAFVFDA---KPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSCAGNGGGGAAAAAAAATTSGQDCPPQLLLSWSSDETVCAWDTGRATGDATAPLATLSVEEGFPVYSCSVSADGRRFALAGGGG 391          
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|224004424|ref|XP_002295863.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585895|gb|ACI64580.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.8037 bits (203), Expect = 2.647e-13
Identity = 103/441 (23.36%), Postives = 161/441 (36.51%), Query Frame = 0
Query:   28 MCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQS-RDGERVADLPNTTSWFATGTAAGAVRIY--------------CVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVEN--QSLTNT-------------WAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAE----------------------------GHLTALHLATHEHLLLACGGRGDVVAFDTRTF-----------SVRAVLKGH---GRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAAR---HVVCHPRFPILTCAF 393
            +C+GG         H E +F  +F    +++A+AS    V+IW+V  +  V  L + +    E LRV W    RDG     DGE+           A+  A G VR++              CV  Q+  E   N + ++ E                  QIY++ ++++        L+T+A+D +Y W +EN  QS  N                F+ + P +  G      G  RNP N  Y+F+A   E       D+V  ALSDG+ RV+   + +     +  +                            GHLTAL        L  C   G VV +  +T            +  AVL+G     RP+FGA                N  +++TW  D  +  +D  +          ++ H  +PI    F
Sbjct:  114 LCIGG---------HRETIFGSSFSSDGKYLATASQDSTVRIWEVNTNRLVATLSEGMDGKFECLRVGWMAA-RDGSVGLNDGEKYL--------LASAGADGVVRLWSACQSEDDDKLEWKCVGTQSHYEYEQNDNDEEVEP----------------PQIYSMQFIQSKSAPHLNLLLTSANDAVYIWKIENDVQSTNNDNVPNKRLIQPHLFVQFERLDPNS--GAYVNQFGGPRNPLNELYVFEASYSEC-----NDLVGAALSDGTCRVVSLANHKNNNTTEEDDEMLDDNNPLQRGQCVLSLPPDYFPEERGGHLTALSWDESGTRLATCIASGRVVLWMIQTVRREDGLSFLHPTCVAVLEGGHDVQRPLFGAKYF----------GGANEELLLTWGVDGKVCVWDSYSVGGVTNPLCTLISHSNYPIYALDF 503          
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|1155005245|ref|WP_078910566.1| (hypothetical protein [Streptomyces sp. NRRL S-87])

HSP 1 Score: 67.3958 bits (163), Expect = 2.822e-8
Identity = 108/422 (25.59%), Postives = 170/422 (40.28%), Query Frame = 0
Query:   17 PSERGPSTASSM-------CLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGE-----RVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAG----ATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQS-----LTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGEL---YPGQGEDVVCVALS-----------DGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLG 403
            P  R  +TASS         + G Q T L + HS  VF +AF    R +A+AS     ++WDV A+G+    LQ   H +EV  VA+     DG     G      R+ D+   T    T     A  +Y VA      R    +HDQK       A+ A++T  +  G   Q+++L +      +       +AD  +  WDV  ++     + +T    S+A + + G+  A     R       ++D  +G++     G G +V+ VA S           D +VR+ D  + +T   +QG  G + ++  +     L        V  +D  T   R +L+GH  PV   A  P   T   G            STD + R +D+ +G +  R  +      + + AF P  R L  G
Sbjct:  877 PDSRTIATASSDTTVRLWDAVTGKQRTVL-EGHSGVVFSVAFSPDGRTLATASGDTSARLWDV-ATGKTRTTLQ--GHTSEVYSVAFS---PDGRTLATGGLDFTVRLWDV--ATGKTRTTLQGHAGEVYSVAFSPDG-RALATAHDQKSVMLWDVASGAIRTVLS--GHTDQVFSLAY----SPDGHTLATGSADKTVRLWDVAGKTTGTALVGHTAELYSIAFSPD-GHTVATASFDRT----ARLWDVGSGKVRATLAGHGREVLSVAFSPDGRTLATGGLDSTVRLWDTATGKTRKTLQGHAGDVYSVAFSPDGRTLATSSRDYAVRLWDVSTGKTRTILEGHTGPVSSVAFSPDGRTLATG------------STDYSARLWDVASGKT--RTTLIGHTDEVYSVAFSPDGRTLATG 1263          
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|760102507|ref|WP_043784724.1| (hypothetical protein [Desulfovibrio alcoholivorans])

HSP 1 Score: 67.0106 bits (162), Expect = 4.969e-8
Identity = 93/389 (23.91%), Postives = 148/389 (38.05%), Query Frame = 0
Query:   37 ALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDV-ENQSLTNTWAFDSVAPTT-EPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVA-----------LSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPH 412
            A+ + H E V  +AF    R++ASAS+ + V++WDVA   + P +L+   H   V  VA+         S DG           + A+G+    VR++ VA     E    + H+++    TF         GPD +  A                 + DD I +WDV   Q L      D V      P  +    G       +  +  A    +  G    V   A           LSD ++RV DR S + +A ++G EG + ++  + +  ++ +         +D  T     VL+GH   VF  A  P   T   G            S D T+R + +  G   A  V+   +  + + AF P  R +V G     P+ +
Sbjct:  910 AVLKGHEEEVASVAFSPDGRYIASASEDKTVRLWDVAGDKD-PTVLR--GHGDAVASVAF---------SPDGR----------YIASGSKDKTVRLWDVAG--GKEPTVLRGHEEQVTSVTF---------GPDGRTLA---------------SASLDDSIRFWDVVSGQGLAALRQNDVVTSVAFSPDGKTIASGSWDETVRLWDMVSAAGPVMRRGHDTIVFSTAFSPDGKTIASGLSDKTIRVWDRASGQELAVLRGHEGDVLSVSFSPNGRIVASASKDKTGRLWDVATGKELRVLRGHEDQVFSVAFSPDGKTLVSG------------SMDKTIRLWGVANGKELA--VLRGHQNEVSSVAFSPDGRSIVSGSAELFPKSN 1236          
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|504949692|ref|WP_015136794.1| (hypothetical protein [Nostoc sp. PCC 7524] >gi|427363613|gb|AFY46334.1| WD40 repeat-containing protein [Nostoc sp. PCC 7524])

HSP 1 Score: 63.1586 bits (152), Expect = 7.962e-7
Identity = 73/354 (20.62%), Postives = 140/354 (39.55%), Query Frame = 0
Query:   40 QAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQK----EAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWA--FDSVAPTT-EPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALS-----------DGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNS 375
            + HS  V  +A+    +++AS SD   +KIW+ +++G+  + LQ   H++ V  VA+    +    + D   +    ++T          +  +Y VA     +   + S D      E+    A++T   H      +Y++ +   ++  +  S     D+ I  WD+    +  T     DSV      P  +        N   I  I    A + + G   DV  VA S           D ++++ D  + +TV  +QG    + ++  +     L +      +  +D  T  V   L+GH R V+  A  P            ++  + + S D T++ +D++TG +
Sbjct: 1198 KGHSGEVISVAYSPDGKYLASVSDDNTIKIWE-SSTGKAVQTLQ--GHSSAVYSVAYSPDGKYLASASDDNTIKIWESSTGKVVQTLQGHSSAVYSVAYSPDGKYLASASSDNTIKIWESSTGKAVQTLQGH---RSVVYSVAYSPDSKYLASASW----DNTIKIWDLSTGKVVQTLQGHSDSVYSVAYSPDGKYLASASSDNTIKIWDISTGKAVQTFQGHSRDVNSVAYSPDGKHLASASLDNTIKIWDISTGKTVQTLQGHSSAVMSVAYSPDGKHLASASADNTIKIWDISTGKVVQTLQGHSRVVYSVAYSP------------DSKYLASASGDNTIKIWDISTGKT 1529          
The following BLAST results are available for this feature:
BLAST of EWM26602.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585108690|gb|EWM26602.1|0.000e+0100.00ribosome assembly protein 4 [Nannochloropsis gadit... [more]
gi|553194672|ref|XP_005856011.1|1.406e-168100.00hypothetical protein NGA_2026500, partial [Nannoch... [more]
gi|298709315|emb|CBJ31251.1|2.324e-3027.36conserved unknown protein [Ectocarpus siliculosus][more]
gi|224004424|ref|XP_002295863.1|2.647e-1323.36predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1155005245|ref|WP_078910566.1|2.822e-825.59hypothetical protein [Streptomyces sp. NRRL S-87][more]
gi|760102507|ref|WP_043784724.1|4.969e-823.91hypothetical protein [Desulfovibrio alcoholivorans... [more]
gi|504949692|ref|WP_015136794.1|7.962e-720.62hypothetical protein [Nostoc sp. PCC 7524] >gi|427... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4008rna4008Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications