Properties
| Property Name | Value |
|---|
| Product | ribosome assembly protein 4 |
| Orig transcript id | gnl|cribi|Naga_100001g110.8113.mrna |
| Orig protein id | gnl|cribi|Naga_100001g110.8113 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:615961..617604 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4008 ID=rna4008|Name=rna4008|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp
ATGTATCTTAACACGATCCTTTCACATTTTCTTCCACTGCCTGGCAGAGA
AATCACTTTCAACGCGGACAAAGACTGCAAGCAGAAAGGTGCTAGTAGGT
AGGAGGTTTCCGAGAATTTCGCAGTACAACTTTGAAACAGGACAGGAACA
GCAAGTCTTTGAAACAGAGATGAGATAGAGATCATGGCGGCTATCAGAAA
ATATCAACTGGTTCTGTGTATTGTCTTTTTTTCATACTTTGTTTGTCGCA
TACTTGCCGTCGAGGAGGCATCGGAAAGGCTTGGGGGGAAAGAAAACTTG
AGAGGCGAAGACCAACATATGCCAGAAATGGAAGAAACGGAGGGTGCGAT
GACGACTTTCGAGTTGTTCAGAGATAGCATGGAGGAATTCAACGAAGACT
TCCAGGAAGGCATCCATTTGGTGAGGGAAAGGGCCTTACAGGTGAAGGAG
CAAGCCTTCAAATTGCAAGAAAAGTTTACCGATATAGTTGACGAGGCCAC
GTTGGACGTTCGCGAGTATTTGGGTCTTGAGAAACCTTACCTCGAGCAGC
TTGAAGATCGGATGCTCAATGTATTACAGAAAACAGCGTTTGCTCGCCAG
GTTATTGTAAAGGGCTGCGTTGGATTGAGCATGGTACTTTATGGCATGCA
CTTTTCTCATTTAGTAGTTTTCATTCACACCTTACGAGTAACTGGGCTTC
CTGTAATGCAGAGAGCATGGAATGAGTTTGTCGACATGTACGGCACCGCA
CGACGGACTATTAAAAGGGAATACCCGAATATGTTGCATACCAAAAAACT
CCTGCAGGCTGTGCACTATGAGATCCAATCAACGCGCAAATTGTTACACG
AGTCCGCTGAAGCTGCCAAGGACGGAAAAGTGACAGAGTCAGAAGCTAGG
GAAGCAGTTCGGAAAGCCAAACTCAATCTACGAGAGCTGAACGAGAAATC
CTGGATCCTCAACCAAGCCTTTTCTTCAATGCACGCTGTGGCAGCTGCAA
TCGACTTTGTAAAGATCAAGGATCTATTTTCTGGAATCTACACTTCGGCT
TTAGCATGTTTTGCAACGGCGTCATCGTCGACATTGCGGGGTCTCTCCAT
AGGCTTTGACCTGGCCTCCTTGATATCCCAGCACATTGACCACGCTGTGC
AGGCTGTGGCAGAGCGCATTCCTCGGTTGGAGGTCCTTCAATACTTGCCT
AGAGAGACACAAAAACTTCTTGGAATGACTGTGTCCTTGGTCTCTGTACT
CAAGGGGCTAATTGTCGTACATTTTGTCGTGCCTCGCCTTACACTGGTCA
TTTCTTCATCGGCCTTGGGTGCCCTTTGGGTTACTGACATGCTAGTGGAC
GTAATGGACGCGGGAGCAGACGGACCTGGCACGGGATTGTTGAATGACAA
ATGCTTATACTTGCTGTCTAATTTCTTTTGGACTGCTGTAGGCTGCATGT
ATCAAAGTCATCGTGAAGGTCAAGATATGCCGCGCCTCATCCAAGTCCTT
CTATTTCCTGCCGTGCGTCTTGAGACTCTTCTATGTTCGCTTGATAATTT
TTTGGGATCCAGCCGAGAGAAAATCGAGTATCTTGTAAAAAAGCATACGC
CTTTTTCGGGTAATGCGATGGAAGCGCAGGAGACAGCGCACACGCCATCA
CTTGCAGTGCAGGAAGCAAAGGAAGGCAACACTGCACGCGAGCGCAAGAG
AGGCGGCCTCCTTCATTTTTGGAAGGGACATATGTGAAACGGGTGGAAAT
GATCCGAAGGAAAGGGTGTATGTGCTGAAAATTGGTTTGGTGGTAGCACC
CATATGTGCACGCATGAATTTATGTACAAGATGTTAATAGAATGTATTCC
ATCCGGTGAAAGGGTGTAAAATCCCACCATGTTTTGCAGTTTGGGGGGAC
GGTGCGATGACTGTGAGACGACTTAAGCGACAAGTAAGCAACTAGTTGTC
GAGGATTATCAGAGGTAGAAGAAGTCAATTGGAAATTATGCCACATATTA
AAAAGCATACCTTTAAAGGGCATATCCTTTTTTGAACATGGTTCACTCAT
GCATGAGGTAAACTTGAACAATGTCTTTTTAAGCAACTCACTGAAACTCT back to topprotein sequence of rna4008 >rna4008-protein ID=rna4008-protein|Name=rna4008|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLA
FDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQP
RDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSH
DQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIY
WWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGE
LYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEH
LLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEA
INAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQL
VLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG back to topmRNA from alignment at CM002462.1:615961..617604+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4008 ID=rna4008|Name=rna4008|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp|location=Sequence derived from alignment at CM002462.1:615961..617604+ (Nannochloropsis gaditana)
CGAGTTGTATAATGCGCACTAAACTTCTTTAGCGCTCTTGGCATGTTCCG
AGAAGTGTGTTGCAAGCTTCTTCCGCGATCAGCCTCAGGCTAGCTCGCCC
AGCCGAGGGGGGTCGTACGTCCTCAGTGATAGTCCTTCTCACCTAATAAT
GCAAACACCATCATTAAATTATCGGTAGCCATGCAGGGACAGTCCGTTGA
TGAACCCAGGGACAAAAATGCGAGGCTTCCGTCCGAGCGAGGCCCTTCGA
CGGCCTCATCTATGTGTCTAGGGGGATCTCAAGCAACAGCATTACCGCAG
GCACATAGCGAGCGGGTTTTCGACCTAGCCTTCGACAAATCCAACAGGTG
GATGGCCTCAGCCTCTGATGCTGAAGATGTGAAAATTTGGGACGTCGCAG
CTAGTGGAGAAGTGCCGAAACTTTTGCAGAGGCTCCCGCATGCAGCTGAA
GTGCTTCGAGTTGCCTGGAAAGGGCAaccgagggatggagagcaatcgag
ggatggagaaagggttGCTGATCTTCCGAACACAACATCATGGTTTGCCA
CTGGTACCGCCGCAGGAGCTGTACGTATATATTGTGTGGCAGCACAGGCG
AAAAGCGAGAGAAATCCGAATAAGAGTCATGACCAAAAGGAAGCTGGTGC
GACCTTTGCCTTAAAAACCGAATTTGCGCATCCCGGCCCGGATCAGCAAA
TTTATGCACTTCTTTGGCTCGAGACTACAGAACTGAATTCTCAGCCTTCA
CTCATGACGGCTGCGGACGACAAAATCTACTGGTGGGACGTGGAGAACCA
GAGCTTGACTAACACGTGGGCCTTCGACTCCGTGGCTCCAACGACAGAGC
CAGGAAATCGGGCGGCCTACGGCGGCGTAAAACGGAACCCTGCAAACATT
TGCTACATATTTGACGCCGTTGCGGGTGAGCTGTACCCCGGGCAGGGCGA
AGACGTGGTGTGTGTGGCCCTGAGCGACGGAAGTGTGCGCGTGCTCGATC
GCCGGTCGGCCCGTACGGTTGCCAGGGtgcagggggcggaggggcactTG
ACTGCATTGCACCTTGCCACCCATGAGCATCTACTCTTAGCgtgcggagg
acgcggcgacGTGGTTGCTTTCGACACACGAACATTTTCCGTGCGCGCTG
TCTTGAAGGGCCACGGACGGCCGGTGTTCGGTGCTGCGCTTGTGCCCCCC
GACCTGACAAATTGTGTTGGTAGCGAAGCTATCAATGCGCCAATGGTGAT
GACCTGGTCGACGGACACGACGCTGCGCTTCTTCGACCTGAATACCGGCA
ATTCCGCAGCCCGCCATGTCGTGTGCCACCCACGTTTTCCGATTTTGACT
TGCGCGTTCAGACCCGGGCACAGACAGCttgttttggggggggggacggg
agtGCCAGAACCACACACGCACCTGCCTGAGGATCTACAGAAGACAGAAA
AATGTTGCGCACATGGCGATGTCAAGCCTCCATCGCTCCTATACTACAAT
TTTCATGGCTAATTGTAAAAAGCAAAGTACAGTGATCACATCATCGGGGG
CCACTTATATCAGTCGATTATTTCATTCAAAACACCGAAAGTTGTCTGTT
TCACCAATTCAATGGGAATCGTGTTGCAGAGATGCTAGTGCTGC back to topCoding sequence (CDS) from alignment at CM002462.1:615961..617604+ >rna4008 ID=rna4008|Name=rna4008|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002462.1:615961..617604+ (Nannochloropsis gaditana)
ATGCAGGGACAGTCCGTTGATGAACCCAGGGACAAAAATGCGAGGCTTCC
GTCCGAGCGAGGCCCTTCGACGGCCTCATCTATGTGTCTAGGGGGATCTC
AAGCAACAGCATTACCGCAGGCACATAGCGAGCGGGTTTTCGACCTAGCC
TTCGACAAATCCAACAGGTGGATGGCCTCAGCCTCTGATGCTGAAGATGT
GAAAATTTGGGACGTCGCAGCTAGTGGAGAAGTGCCGAAACTTTTGCAGA
GGCTCCCGCATGCAGCTGAAGTGCTTCGAGTTGCCTGGAAAGGGCAaccg
agggatggagagcaatcgagggatggagaaagggttGCTGATCTTCCGAA
CACAACATCATGGTTTGCCACTGGTACCGCCGCAGGAGCTGTACGTATAT
ATTGTGTGGCAGCACAGGCGAAAAGCGAGAGAAATCCGAATAAGAGTCAT
GACCAAAAGGAAGCTGGTGCGACCTTTGCCTTAAAAACCGAATTTGCGCA
TCCCGGCCCGGATCAGCAAATTTATGCACTTCTTTGGCTCGAGACTACAG
AACTGAATTCTCAGCCTTCACTCATGACGGCTGCGGACGACAAAATCTAC
TGGTGGGACGTGGAGAACCAGAGCTTGACTAACACGTGGGCCTTCGACTC
CGTGGCTCCAACGACAGAGCCAGGAAATCGGGCGGCCTACGGCGGCGTAA
AACGGAACCCTGCAAACATTTGCTACATATTTGACGCCGTTGCGGGTGAG
CTGTACCCCGGGCAGGGCGAAGACGTGGTGTGTGTGGCCCTGAGCGACGG
AAGTGTGCGCGTGCTCGATCGCCGGTCGGCCCGTACGGTTGCCAGGGtgc
agggggcggaggggcactTGACTGCATTGCACCTTGCCACCCATGAGCAT
CTACTCTTAGCgtgcggaggacgcggcgacGTGGTTGCTTTCGACACACG
AACATTTTCCGTGCGCGCTGTCTTGAAGGGCCACGGACGGCCGGTGTTCG
GTGCTGCGCTTGTGCCCCCCGACCTGACAAATTGTGTTGGTAGCGAAGCT
ATCAATGCGCCAATGGTGATGACCTGGTCGACGGACACGACGCTGCGCTT
CTTCGACCTGAATACCGGCAATTCCGCAGCCCGCCATGTCGTGTGCCACC
CACGTTTTCCGATTTTGACTTGCGCGTTCAGACCCGGGCACAGACAGCtt
gttttggggggggggacgggagtGCCAGAACCACACACGCACCTGCCTGA
GGATCTACAGAAGACAGAAAAATGTTGCGCACATGGCGATGTCAAGCCTC
CATCGCTCCTATACTACAATTTTCATGGCTAA back to top
|