EWM26602.1, cds3998 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|585108690|gb|EWM26602.1| (ribosome assembly protein 4 [Nannochloropsis gaditana]) HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0 Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0 Query: 1 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG 443 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG Sbjct: 1 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPHTHLPEDLQKTEKCCAHGDVKPPSLLYYNFHG 443
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|553194672|ref|XP_005856011.1| (hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526] >gi|422293047|gb|EKU20348.1| hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 481.871 bits (1239), Expect = 1.406e-168 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 Query: 1 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGV 233 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGV Sbjct: 2 MQGQSVDEPRDKNARLPSERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGV 234
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|298709315|emb|CBJ31251.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 131.724 bits (330), Expect = 2.324e-30 Identity = 113/413 (27.36%), Postives = 184/413 (44.55%), Query Frame = 0 Query: 19 ERGPSTASSMCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFA-LKTEFAHPGPDQQIYALLWLETTELNSQPS------LMTAADDKIYWWDVENQSLTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLD-RRSARTVARVQGA-EGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVP-----------PDLTNCVGSEAINAPMVMTWSTDTTLRFFDLN--TGNSAA--RHVVCHPRFPILTCAFRPGHRQLVLGGGTG 407 E S A + C + H R FD F + SAS+ ++WD++ SG+ K L+ EVLR W N + ATG+A G VR++ + + R+ D+ ++ L+ G D Q+Y+ ++ + PS L+TA+D ++ WDVE + ++ A V + G +RNP ++ ++FDA + PG G V+ VALSDG+VRV D + A ++G + HLT+L + +L +CGG G + +DTRT++ R+VL GH RPV+GAA + ++++WS+D T+ +D TG++ A + FP+ +C+ R+ L GG G Sbjct: 7 EERKSVALAACFNDKRCHRRLIGHRARTFDFQFHPTEDAAISASEDGTARVWDLS-SGKCAKSLEGHNKKHEVLRACWA--------------PPGAANDSVSVATGSADGIVRLWGI--RHGDGRDEKSGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSIGG--------ERNPDDLAFVFDA---KPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSCAGNGGGGAAAAAAAATTSGQDCPPQLLLSWSSDETVCAWDTGRATGDATAPLATLSVEEGFPVYSCSVSADGRRFALAGGGG 391
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|224004424|ref|XP_002295863.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585895|gb|ACI64580.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 82.8037 bits (203), Expect = 2.647e-13 Identity = 103/441 (23.36%), Postives = 161/441 (36.51%), Query Frame = 0 Query: 28 MCLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQS-RDGERVADLPNTTSWFATGTAAGAVRIY--------------CVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVEN--QSLTNT-------------WAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAE----------------------------GHLTALHLATHEHLLLACGGRGDVVAFDTRTF-----------SVRAVLKGH---GRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAAR---HVVCHPRFPILTCAF 393 +C+GG H E +F +F +++A+AS V+IW+V + V L + + E LRV W RDG DGE+ A+ A G VR++ CV Q+ E N + ++ E QIY++ ++++ L+T+A+D +Y W +EN QS N F+ + P + G G RNP N Y+F+A E D+V ALSDG+ RV+ + + + + GHLTAL L C G VV + +T + AVL+G RP+FGA N +++TW D + +D + ++ H +PI F Sbjct: 114 LCIGG---------HRETIFGSSFSSDGKYLATASQDSTVRIWEVNTNRLVATLSEGMDGKFECLRVGWMAA-RDGSVGLNDGEKYL--------LASAGADGVVRLWSACQSEDDDKLEWKCVGTQSHYEYEQNDNDEEVEP----------------PQIYSMQFIQSKSAPHLNLLLTSANDAVYIWKIENDVQSTNNDNVPNKRLIQPHLFVQFERLDPNS--GAYVNQFGGPRNPLNELYVFEASYSEC-----NDLVGAALSDGTCRVVSLANHKNNNTTEEDDEMLDDNNPLQRGQCVLSLPPDYFPEERGGHLTALSWDESGTRLATCIASGRVVLWMIQTVRREDGLSFLHPTCVAVLEGGHDVQRPLFGAKYF----------GGANEELLLTWGVDGKVCVWDSYSVGGVTNPLCTLISHSNYPIYALDF 503
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|1155005245|ref|WP_078910566.1| (hypothetical protein [Streptomyces sp. NRRL S-87]) HSP 1 Score: 67.3958 bits (163), Expect = 2.822e-8 Identity = 108/422 (25.59%), Postives = 170/422 (40.28%), Query Frame = 0 Query: 17 PSERGPSTASSM-------CLGGSQATALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGE-----RVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAG----ATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQS-----LTNTWAFDSVAPTTEPGNRAAYGGVKRNPANICYIFDAVAGEL---YPGQGEDVVCVALS-----------DGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLG 403 P R +TASS + G Q T L + HS VF +AF R +A+AS ++WDV A+G+ LQ H +EV VA+ DG G R+ D+ T T A +Y VA R +HDQK A+ A++T + G Q+++L + + +AD + WDV ++ + +T S+A + + G+ A R ++D +G++ G G +V+ VA S D +VR+ D + +T +QG G + ++ + L V +D T R +L+GH PV A P T G STD + R +D+ +G + R + + + AF P R L G Sbjct: 877 PDSRTIATASSDTTVRLWDAVTGKQRTVL-EGHSGVVFSVAFSPDGRTLATASGDTSARLWDV-ATGKTRTTLQ--GHTSEVYSVAFS---PDGRTLATGGLDFTVRLWDV--ATGKTRTTLQGHAGEVYSVAFSPDG-RALATAHDQKSVMLWDVASGAIRTVLS--GHTDQVFSLAY----SPDGHTLATGSADKTVRLWDVAGKTTGTALVGHTAELYSIAFSPD-GHTVATASFDRT----ARLWDVGSGKVRATLAGHGREVLSVAFSPDGRTLATGGLDSTVRLWDTATGKTRKTLQGHAGDVYSVAFSPDGRTLATSSRDYAVRLWDVSTGKTRTILEGHTGPVSSVAFSPDGRTLATG------------STDYSARLWDVASGKT--RTTLIGHTDEVYSVAFSPDGRTLATG 1263
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|760102507|ref|WP_043784724.1| (hypothetical protein [Desulfovibrio alcoholivorans]) HSP 1 Score: 67.0106 bits (162), Expect = 4.969e-8 Identity = 93/389 (23.91%), Postives = 148/389 (38.05%), Query Frame = 0 Query: 37 ALPQAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDV-ENQSLTNTWAFDSVAPTT-EPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVA-----------LSDGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGHRQLVLGGGTGVPEPH 412 A+ + H E V +AF R++ASAS+ + V++WDVA + P +L+ H V VA+ S DG + A+G+ VR++ VA E + H+++ TF GPD + A + DD I +WDV Q L D V P + G + + A + G V A LSD ++RV DR S + +A ++G EG + ++ + + ++ + +D T VL+GH VF A P T G S D T+R + + G A V+ + + + AF P R +V G P+ + Sbjct: 910 AVLKGHEEEVASVAFSPDGRYIASASEDKTVRLWDVAGDKD-PTVLR--GHGDAVASVAF---------SPDGR----------YIASGSKDKTVRLWDVAG--GKEPTVLRGHEEQVTSVTF---------GPDGRTLA---------------SASLDDSIRFWDVVSGQGLAALRQNDVVTSVAFSPDGKTIASGSWDETVRLWDMVSAAGPVMRRGHDTIVFSTAFSPDGKTIASGLSDKTIRVWDRASGQELAVLRGHEGDVLSVSFSPNGRIVASASKDKTGRLWDVATGKELRVLRGHEDQVFSVAFSPDGKTLVSG------------SMDKTIRLWGVANGKELA--VLRGHQNEVSSVAFSPDGRSIVSGSAELFPKSN 1236
BLAST of EWM26602.1 vs. NCBI_GenBank
Match: gi|504949692|ref|WP_015136794.1| (hypothetical protein [Nostoc sp. PCC 7524] >gi|427363613|gb|AFY46334.1| WD40 repeat-containing protein [Nostoc sp. PCC 7524]) HSP 1 Score: 63.1586 bits (152), Expect = 7.962e-7 Identity = 73/354 (20.62%), Postives = 140/354 (39.55%), Query Frame = 0 Query: 40 QAHSERVFDLAFDKSNRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAAQAKSERNPNKSHDQK----EAGATFALKTEFAHPGPDQQIYALLWLETTELNSQPSLMTAADDKIYWWDVENQSLTNTWA--FDSVAPTT-EPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALS-----------DGSVRVLDRRSARTVARVQGAEGHLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLTNCVGSEAINAPMVMTWSTDTTLRFFDLNTGNS 375 + HS V +A+ +++AS SD +KIW+ +++G+ + LQ H++ V VA+ + + D + ++T + +Y VA + + S D E+ A++T H +Y++ + ++ + S D+ I WD+ + T DSV P + N I I A + + G DV VA S D ++++ D + +TV +QG + ++ + L + + +D T V L+GH R V+ A P ++ + + S D T++ +D++TG + Sbjct: 1198 KGHSGEVISVAYSPDGKYLASVSDDNTIKIWE-SSTGKAVQTLQ--GHSSAVYSVAYSPDGKYLASASDDNTIKIWESSTGKVVQTLQGHSSAVYSVAYSPDGKYLASASSDNTIKIWESSTGKAVQTLQGH---RSVVYSVAYSPDSKYLASASW----DNTIKIWDLSTGKVVQTLQGHSDSVYSVAYSPDGKYLASASSDNTIKIWDISTGKAVQTFQGHSRDVNSVAYSPDGKHLASASLDNTIKIWDISTGKTVQTLQGHSSAVMSVAYSPDGKHLASASADNTIKIWDISTGKVVQTLQGHSRVVYSVAYSP------------DSKYLASASGDNTIKIWDISTGKT 1529 The following BLAST results are available for this feature:
BLAST of EWM26602.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|