EWM26726.1, cds3959 (CDS) Nannochloropsis gaditana

Overview
NameEWM26726.1
Unique Namecds3959
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:529212..529406 +
Alignment locationCM002462.1:529668..529761 +
Alignment locationCM002462.1:530020..530348 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26726.1
Productsco1 family protein
Orig transcript idgnl|cribi|Naga_100001g152.8237.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:529212..529406 +
CM002462.1supercontigCM002462.1:529668..529761 +
CM002462.1supercontigCM002462.1:530020..530348 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR003782SCO1/SenC
Homology
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|585108814|gb|EWM26726.1| (sco1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 429.098 bits (1102), Expect = 2.998e-152
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSAILI 205
            MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSAILI
Sbjct:    1 MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSAILI 205          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|635362604|emb|CCI48695.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 172.555 bits (436), Expect = 5.248e-50
Identity = 78/131 (59.54%), Postives = 98/131 (74.81%), Query Frame = 0
Query:   66 PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALP 195
            P+TW GLA+ AV G+G+ Y+Y  EK+R+Q Q   KV S GKP LGGPWTLVD  T R VTDA FRG+ LLLYFGFTHCPDICP+ELV++G +LD L R+P  P V P+FI+VDP RD++ Q++ Y +   P
Sbjct:   67 PITWTGLALAAVIGSGVVYYYYNEKDRLQTQTTTKVVSIGKPLLGGPWTLVDCDTRRAVTDASFRGQHLLLYFGFTHCPDICPNELVRIGNVLDQLKRDPKCPQVLPLFITVDPRRDSIAQMQAYKKDFHP 197          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|953501425|emb|CEG37426.1| (Putative cytochrome C oxidase assembly protein [Plasmopara halstedii])

HSP 1 Score: 168.703 bits (426), Expect = 3.059e-49
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 0
Query:   61 RSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLS 201
            R+EK  P+TW GLA+  V G+G  Y+Y  EK+R+Q Q   KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ +  LP V P+F++VDP RD + Q++ Y     P+   L+
Sbjct:   36 RTEKFGPITWSGLALAGVVGSGAVYYYFSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYTLLYFGFTHCPDICPNELVRIGNVLDKLETDKTLPEVVPLFVTVDPKRDTIAQMQLYKADFHPKMKMLT 178          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|301108041|ref|XP_002903102.1| (SCO1 family protein [Phytophthora infestans T30-4] >gi|262097474|gb|EEY55526.1| SCO1 family protein [Phytophthora infestans T30-4])

HSP 1 Score: 169.088 bits (427), Expect = 3.277e-49
Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 0
Query:   39 RRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
            RR FS + +++ RA K  P         +TW GLA+  + G+G  Y+Y  EK+R+Q Q+  KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD+L+ E N P V P+F++VDP RD + Q++ Y
Sbjct:    5 RRMFSDAPASSTRADKFGP---------ITWSGLALAGIVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDTLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 146          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|325188069|emb|CCA22612.1| (SCO1 family protein putative [Albugo laibachii Nc14])

HSP 1 Score: 169.859 bits (429), Expect = 5.988e-49
Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 0
Query:   66 PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSA 202
            P+TW GLA+  + G+G+ Y+Y  EK+R+Q Q   KV S GKP LGGPWTLVD  T R VTDA FRG+ LLLYFGFTHCPDICP+ELV++G +LD+L R+P  P V P+F++VDP RD++ Q++ Y Q   P    L+ 
Sbjct:   67 PITWTGLALATIVGSGVVYYYFNEKDRLQTQTTTKVVSVGKPLLGGPWTLVDCDTRRAVTDASFRGQHLLLYFGFTHCPDICPNELVRIGNVLDNLKRDPKCPDVLPLFVTVDPRRDSIVQMQAYKQDFHPSMKMLTG 204          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|567952585|gb|ETK78257.1| (hypothetical protein L915_15684 [Phytophthora parasitica] >gi|567981249|gb|ETL31692.1| hypothetical protein L916_15579 [Phytophthora parasitica] >gi|570942675|gb|ETP07932.1| hypothetical protein F441_15966 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 167.548 bits (423), Expect = 1.685e-48
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0
Query:   57 PGSARSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
            PG+ R+EK  P+TW GLA+  V G+G  Y+Y  EK+R+Q Q+  KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct:   33 PGT-RAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|675204695|ref|XP_008911232.1| (hypothetical protein PPTG_15690 [Phytophthora parasitica INRA-310] >gi|568088602|gb|ETN03459.1| hypothetical protein PPTG_15690 [Phytophthora parasitica INRA-310] >gi|570318864|gb|ETO66812.1| hypothetical protein F444_16123 [Phytophthora parasitica P1976] >gi|570973296|gb|ETP35963.1| hypothetical protein F442_15991 [Phytophthora parasitica P10297] >gi|970629544|gb|KUF76779.1| SCO1 protein [Phytophthora nicotianae])

HSP 1 Score: 167.548 bits (423), Expect = 1.858e-48
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0
Query:   57 PGSARSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
            PG+ R+EK  P+TW GLA+  V G+G  Y+Y  EK+R+Q Q+  KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct:   33 PGT-RAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|568010739|gb|ETL84922.1| (hypothetical protein L917_15402 [Phytophthora parasitica])

HSP 1 Score: 167.162 bits (422), Expect = 2.866e-48
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0
Query:   57 PGSARSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
            PG+ R+EK  P+TW GLA+  V G G  Y+Y  EK+R+Q Q+  KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct:   33 PGT-RAEKFGPITWSGLALAGVVGNGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|566015132|gb|ETI38043.1| (hypothetical protein F443_16138 [Phytophthora parasitica P1569] >gi|568040619|gb|ETM38067.1| hypothetical protein L914_15536 [Phytophthora parasitica])

HSP 1 Score: 166.777 bits (421), Expect = 4.189e-48
Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 0
Query:   47 SNNVRATKSEPGSA-----RSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
            +  +RAT+     A     R+EK  P+TW GLA+  V G+G  Y+Y  EK+R+Q Q+  KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct:   17 AEGLRATRRMFSDAPVPGRRAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165          
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|695462298|ref|XP_009538414.1| (hypothetical protein PHYSODRAFT_362456 [Phytophthora sojae] >gi|348666690|gb|EGZ06517.1| hypothetical protein PHYSODRAFT_362456 [Phytophthora sojae])

HSP 1 Score: 164.081 bits (414), Expect = 1.591e-46
Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 0
Query:   57 PGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
            PG+  +   PVTW GLA+  V G+G+ Y+Y  EK+R+Q Q+  KVTS GKP LGGPWTLVD  T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E    VV P+F++VDP RD V Q++ Y
Sbjct:   79 PGTRANNFGPVTWSGLALAGVVGSGVVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEVEKCSEVV-PLFVTVDPRRDTVEQMQAY 211          
The following BLAST results are available for this feature:
BLAST of EWM26726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108814|gb|EWM26726.1|2.998e-152100.00sco1 family protein [Nannochloropsis gaditana][more]
gi|635362604|emb|CCI48695.1|5.248e-5059.54unnamed protein product [Albugo candida][more]
gi|953501425|emb|CEG37426.1|3.059e-4955.24Putative cytochrome C oxidase assembly protein [Pl... [more]
gi|301108041|ref|XP_002903102.1|3.277e-4953.29SCO1 family protein [Phytophthora infestans T30-4]... [more]
gi|325188069|emb|CCA22612.1|5.988e-4955.80SCO1 family protein putative [Albugo laibachii Nc1... [more]
gi|567952585|gb|ETK78257.1|1.685e-4859.26hypothetical protein L915_15684 [Phytophthora para... [more]
gi|675204695|ref|XP_008911232.1|1.858e-4859.26hypothetical protein PPTG_15690 [Phytophthora para... [more]
gi|568010739|gb|ETL84922.1|2.866e-4859.26hypothetical protein L917_15402 [Phytophthora para... [more]
gi|566015132|gb|ETI38043.1|4.189e-4854.67hypothetical protein F443_16138 [Phytophthora para... [more]
gi|695462298|ref|XP_009538414.1|1.591e-4658.21hypothetical protein PHYSODRAFT_362456 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3969rna3969Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications