EWM26726.1, cds3959 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|585108814|gb|EWM26726.1| (sco1 family protein [Nannochloropsis gaditana]) HSP 1 Score: 429.098 bits (1102), Expect = 2.998e-152 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSAILI 205
MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSAILI
Sbjct: 1 MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSAILI 205
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|635362604|emb|CCI48695.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 172.555 bits (436), Expect = 5.248e-50 Identity = 78/131 (59.54%), Postives = 98/131 (74.81%), Query Frame = 0
Query: 66 PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALP 195
P+TW GLA+ AV G+G+ Y+Y EK+R+Q Q KV S GKP LGGPWTLVD T R VTDA FRG+ LLLYFGFTHCPDICP+ELV++G +LD L R+P P V P+FI+VDP RD++ Q++ Y + P
Sbjct: 67 PITWTGLALAAVIGSGVVYYYYNEKDRLQTQTTTKVVSIGKPLLGGPWTLVDCDTRRAVTDASFRGQHLLLYFGFTHCPDICPNELVRIGNVLDQLKRDPKCPQVLPLFITVDPRRDSIAQMQAYKKDFHP 197
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|953501425|emb|CEG37426.1| (Putative cytochrome C oxidase assembly protein [Plasmopara halstedii]) HSP 1 Score: 168.703 bits (426), Expect = 3.059e-49 Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 0
Query: 61 RSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLS 201
R+EK P+TW GLA+ V G+G Y+Y EK+R+Q Q KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ + LP V P+F++VDP RD + Q++ Y P+ L+
Sbjct: 36 RTEKFGPITWSGLALAGVVGSGAVYYYFSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYTLLYFGFTHCPDICPNELVRIGNVLDKLETDKTLPEVVPLFVTVDPKRDTIAQMQLYKADFHPKMKMLT 178
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|301108041|ref|XP_002903102.1| (SCO1 family protein [Phytophthora infestans T30-4] >gi|262097474|gb|EEY55526.1| SCO1 family protein [Phytophthora infestans T30-4]) HSP 1 Score: 169.088 bits (427), Expect = 3.277e-49 Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 0
Query: 39 RRKFSHSDSNNVRATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
RR FS + +++ RA K P +TW GLA+ + G+G Y+Y EK+R+Q Q+ KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD+L+ E N P V P+F++VDP RD + Q++ Y
Sbjct: 5 RRMFSDAPASSTRADKFGP---------ITWSGLALAGIVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDTLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 146
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|325188069|emb|CCA22612.1| (SCO1 family protein putative [Albugo laibachii Nc14]) HSP 1 Score: 169.859 bits (429), Expect = 5.988e-49 Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 0
Query: 66 PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKLSA 202
P+TW GLA+ + G+G+ Y+Y EK+R+Q Q KV S GKP LGGPWTLVD T R VTDA FRG+ LLLYFGFTHCPDICP+ELV++G +LD+L R+P P V P+F++VDP RD++ Q++ Y Q P L+
Sbjct: 67 PITWTGLALATIVGSGVVYYYFNEKDRLQTQTTTKVVSVGKPLLGGPWTLVDCDTRRAVTDASFRGQHLLLYFGFTHCPDICPNELVRIGNVLDNLKRDPKCPDVLPLFVTVDPRRDSIVQMQAYKQDFHPSMKMLTG 204
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|567952585|gb|ETK78257.1| (hypothetical protein L915_15684 [Phytophthora parasitica] >gi|567981249|gb|ETL31692.1| hypothetical protein L916_15579 [Phytophthora parasitica] >gi|570942675|gb|ETP07932.1| hypothetical protein F441_15966 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 167.548 bits (423), Expect = 1.685e-48 Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0
Query: 57 PGSARSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
PG+ R+EK P+TW GLA+ V G+G Y+Y EK+R+Q Q+ KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct: 33 PGT-RAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|675204695|ref|XP_008911232.1| (hypothetical protein PPTG_15690 [Phytophthora parasitica INRA-310] >gi|568088602|gb|ETN03459.1| hypothetical protein PPTG_15690 [Phytophthora parasitica INRA-310] >gi|570318864|gb|ETO66812.1| hypothetical protein F444_16123 [Phytophthora parasitica P1976] >gi|570973296|gb|ETP35963.1| hypothetical protein F442_15991 [Phytophthora parasitica P10297] >gi|970629544|gb|KUF76779.1| SCO1 protein [Phytophthora nicotianae]) HSP 1 Score: 167.548 bits (423), Expect = 1.858e-48 Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0
Query: 57 PGSARSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
PG+ R+EK P+TW GLA+ V G+G Y+Y EK+R+Q Q+ KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct: 33 PGT-RAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|568010739|gb|ETL84922.1| (hypothetical protein L917_15402 [Phytophthora parasitica]) HSP 1 Score: 167.162 bits (422), Expect = 2.866e-48 Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0
Query: 57 PGSARSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
PG+ R+EK P+TW GLA+ V G G Y+Y EK+R+Q Q+ KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct: 33 PGT-RAEKFGPITWSGLALAGVVGNGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|566015132|gb|ETI38043.1| (hypothetical protein F443_16138 [Phytophthora parasitica P1569] >gi|568040619|gb|ETM38067.1| hypothetical protein L914_15536 [Phytophthora parasitica]) HSP 1 Score: 166.777 bits (421), Expect = 4.189e-48 Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 0
Query: 47 SNNVRATKSEPGSA-----RSEKM-PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
+ +RAT+ A R+EK P+TW GLA+ V G+G Y+Y EK+R+Q Q+ KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E N P V P+F++VDP RD + Q++ Y
Sbjct: 17 AEGLRATRRMFSDAPVPGRRAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAY 165
BLAST of EWM26726.1 vs. NCBI_GenBank
Match: gi|695462298|ref|XP_009538414.1| (hypothetical protein PHYSODRAFT_362456 [Phytophthora sojae] >gi|348666690|gb|EGZ06517.1| hypothetical protein PHYSODRAFT_362456 [Phytophthora sojae]) HSP 1 Score: 164.081 bits (414), Expect = 1.591e-46 Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 0
Query: 57 PGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDF-TGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHY 189
PG+ + PVTW GLA+ V G+G+ Y+Y EK+R+Q Q+ KVTS GKP LGGPWTLVD T R VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E VV P+F++VDP RD V Q++ Y
Sbjct: 79 PGTRANNFGPVTWSGLALAGVVGSGVVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEVEKCSEVV-PLFVTVDPRRDTVEQMQAY 211 The following BLAST results are available for this feature:
BLAST of EWM26726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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