rna3969, rna3969 (mRNA) Nannochloropsis gaditana

Overview
Namerna3969
Unique Namerna3969
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1694
Alignment locationCM002462.1:529200..531064 +

Link to JBrowse

Properties
Property NameValue
Productsco1 family protein
Orig transcript idgnl|cribi|Naga_100001g152.8237.mrna
Orig protein idgnl|cribi|Naga_100001g152.8237
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:529200..531064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g152gene3818Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3969rna3969-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26726.1cds3959Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3969 ID=rna3969|Name=rna3969|organism=Nannochloropsis gaditana|type=mRNA|length=1694bp
AGATTCATGGCTGACGGGTACGCACTCTACATTGCATCGCGGACGCAGGC
CCGGGCGCCGGCGTCACGCCCTGGCATGTGACCACTGGGCCACGCCTTCT
AAGAAGCCGCCACTAGGAGCGTTCGTGCCATTTTTAGCAATGAGCGATCA
CTCGGAGAGATGAACAGGGATTTCCCTCGTCCGGAAAGGGTCTCAGCTAC
TCGTCTTAGACAAGGAAACGCGCTATCCATCCCTGGCTGTCTTCATTTAC
TTTTTTAACTGCACATGGGGGAGCTTGTTGTCTCGAGATACCCCCCAGCT
CTTGAGACGTTGTGCTAAAGTTTCAAAGAAAGAATTTTTCTCTCTATTCT
CATAGTTTTTTCTGAAACCTGTCCCTCCGCGCAAATGTGGCTCAGGTACC
TGTCGCCGTTATATCTACGGTTGAACGACATTAAGACAGATGGATACGTC
GGAAGTGGATGAACGTGCGCAGCAAGCACCGCATAATCAGCCGACGGCCG
ATGGAGGAGAGGGCGAGCTGACGGCCACCTCTTCGGCAATAGTGAGTGGG
GATGCCCCCTCCCCTGCGAGTGGAGAAAGAAATGGAATGATTGTTGGTCA
ACAGAAGGAAGAAATTGCCGAATCACACGGTGTGAATGATGGGGAGGGGG
CAGGCACAGCCGCAGTAGCTCAACATGAGCAAGACAAGGTAAACATGCAG
TCCCTGCCCATCCGCGCCTATTTGGATCAGACAGTTGTGCCGATACTTCT
TGACGGCATGTCTCAACTTGTTGTAGAGCGTCCTAGCAACCCAATTGAGT
GGCTAGCAGCATATTTGATCAAAAATAATCCTCAGAAGTTCGAGTAAAAG
AAAGTGTGCACCTAAGATCCACGACTCTAAAAAAAAAGGGTCTTTTTGAG
AGCAGAGATACAAAATTGGGGGAGAGGATATGTGCAAAAATTCAAGTACG
TTGTTGAGTTTTCTTTTCCGTAAACAATACGCTCCGCAAGAACGGATCAT
ACCGACTAAGTTGCGATGACCTGTTTTCTCGATTTCCTTGCCTCTTCCCC
GGTTTCTTGGAGTCATGAGAAGCGCGGCAGTCTGAGACAAGCAGACTGCC
CATGAATATGCGGTTCACCAATTTGTAAGGGAGTTTTTGAGATGTGACCA
GAAATCTTGAGGCACGAAGGGTGTGAGTTTTACGCACAGCTGCAGGACGC
TTGTGTAAAGAAGTTGGGACGGAAAGAGTAATTAAATTGGTCACGAAAAA
TGAGGTCTGTGCTGTCAAAACGACCAAAGTCATAGAGACATTGCATAAGA
ATATGTGAAAACCGTGCAGACGGTTACAAAAGCAATGATATGGCACCAAA
TAGGGAGTGCACTGGATGCGCTTTGACTATGCTCACGGAGCTCACCTCAT
TTGCCATCAGCAAGGAATCCTTTTAGCAGCTTGGCTCCCGTCACCATGAA
AAGTGTCTGCCAAATGCCCAATAGAATGCGCGGTACTACGCCTTTAAACA
GTCCTGCAGGACCCTCTGTGGTCACGATGCCGCTCATTACCTTCAACATG
GATCGCGAAGCCTCGCCCGCATTGGCAGCCGCCTGCATTTCTATCCGTGC
CACTTCCTGAAAAATGTTGCCCGTGAAATAAAAAATGTGCCATGACTTAG
ATATAAAATAGGATGACAGGCAATATACGAAAGAAGCAAAGCGC
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protein sequence of rna3969

>rna3969-protein ID=rna3969-protein|Name=rna3969|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MKPTSSVLLYHAKAMRQWSTYHCGHHHPFSRHGARLIPRRKFSHSDSNNV
RATKSEPGSARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGK
VTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSEL
VKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALPEDSKL
SAILI
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mRNA from alignment at CM002462.1:529200..531064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3969 ID=rna3969|Name=rna3969|organism=Nannochloropsis gaditana|type=mRNA|length=1865bp|location=Sequence derived from alignment at CM002462.1:529200..531064+ (Nannochloropsis gaditana)
TACAGGAACATAATGAAACCTACATCGTCAGTACTTCTGTACCATGCGAA
AGCCATGCGGCAATGGTCAACGTATCACTGCGGCCATCATCATCCTTTTT
CTCGGCATGGAGCGAGACTTATTCCGAGGCGAAAATTCAGTCACTCCGAC
AGCAACAACGTGAGAGCGACCAAGTCTGAGCCTGGCAGCGCCAGAAGTGA
GAAAATGGTAAGATCGGTTGTCGCTCGCCCGTATTAAGAATGTATCAGTG
TTCTCGAGATGTTTAGACTTGTCATTGTCCAGGGCAAAAATGGCAAATGC
CAGCAAAGTGAAAGGTTGCGTTCCAAAGCCAAGGCTCGCAAAACACTTGC
TGGAGCCCTCCTTTCAGCAACTTCGCTCAGTTTCTGATTCAAAAAGCATA
TGATATGAAACGTTGGTTTTGTTCTCACTGCTTTTCTACTACTGTATATC
ATTCAACTCCTACCACAGCCAGTAACGTGGGTTGGTTTAGCCATTATGGC
AGTGACAGGGACGGGCTTAGCGTACTTTTATCAAGTCGAAAAAGAGCGAA
TGCAGCAGCAAGGTAGTATAAATGTATATGTGGTAGAACTAATGTTCTTT
TGGCGTTTTTGCTCCACACTGAGACGTGATTGTACACTGTGCAAAATAAT
TGCTGCACACTGGAGGCGGTCACGCAAAGAAGAGTCACTTTCACTCATAG
CTTTCCTTACTGTTTATGAAGACACCATCCGGATGGAGGTTTGTGTCTTT
TTTCTATCATGAGTATTTGATGGAGTCTTACTTATCAGTGCGACTTCTCA
TCTCCCACGATGCATTCCAGCTCTGGGCAAGGTAACAAGTTACGGAAAGC
CGGCTCTTGGAGGACCGTGGACGCTCGTTGATTTTACCGGCAGGCCTGTT
ACGGACGCCGATTTTCGGGGGGAATTTCTGCTCTTATACTTTGGTTTCAC
TCACTGCCCTGATATCTGTCCGTCGGAGCTTGTCAAGGTTGGCAAAATTT
TGGACTCATTAGATCGAGAGCCAAATCTGCCTGTTGTACGACCTGTTTTC
ATTTCCGTGGACCCTGACCGGGATAACGTGGGGCAATTACGTCATTACGC
TCAAGGTGCGTTGCCTGAAGACTCAAAATTGAGCGCAATTTTAATCTAAA
CTCTCACTCCATTGCCCTCCAGACTTTCATCCGCGCATCCTGTATTTGAC
GGGCACGGAGGAACAATTATCCAGAATGACCAAGGCTTACCGTGTCTATT
TCAGCAAGGTAGTCGCGCAGGCATAATCCTCTGTTCAGCAAGAAAAAATT
TTAATTTCATGATCTTTGACATTTCAATGTCACATCCATCTGTTCGGTTA
TTGATGTCCTCTCAAAATCTTCTTTCCTCATCTGTAGGCtgatgaagaag
atgaagaaaacTACTTAGTGGATCACTCGATTGTGTTGTACTTAATCGGG
CCCGATGGTTCATTTTTGGATTTTTTTACGCAGTCGATGATTCCTGCGGA
CATAGTTAATAGAATTAGAGGGTACCTAACGCAAGCTAGGAGGCTCGCTG
CTTAAGTAAGAAAGGAAGCATGTTTCCAAGTACCCCCAGGACATATGGTA
TATTAAACCTTTGTACGTGTGCTTTTGTGTAAACATACAGACGAACACAT
ATTTAATATAGCTTCAAGATGCGCCAGAAGCTGAGAGGGTTCATGATTAC
ACATGGGTGCGCTGGAAATCCATCTTTCAATCAAAACCATGTAATTTAAT
CAGTGATGATGCATGCAGAGCGAAGAATTTTCAGCTACTACCGGAGGATG
ACAAGTAGACTAATTTCAACTTCAAGTTTCCCTTCGATCCTTTGAAACAC
ATACCATACATGACC
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Coding sequence (CDS) from alignment at CM002462.1:529200..531064+

>rna3969 ID=rna3969|Name=rna3969|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002462.1:529200..531064+ (Nannochloropsis gaditana)
ATGAAACCTACATCGTCAGTACTTCTGTACCATGCGAAAGCCATGCGGCA
ATGGTCAACGTATCACTGCGGCCATCATCATCCTTTTTCTCGGCATGGAG
CGAGACTTATTCCGAGGCGAAAATTCAGTCACTCCGACAGCAACAACGTG
AGAGCGACCAAGTCTGAGCCTGGCAGCGCCAGAAGTGAGAAAATGCCAGT
AACGTGGGTTGGTTTAGCCATTATGGCAGTGACAGGGACGGGCTTAGCGT
ACTTTTATCAAGTCGAAAAAGAGCGAATGCAGCAGCAAGCTCTGGGCAAG
GTAACAAGTTACGGAAAGCCGGCTCTTGGAGGACCGTGGACGCTCGTTGA
TTTTACCGGCAGGCCTGTTACGGACGCCGATTTTCGGGGGGAATTTCTGC
TCTTATACTTTGGTTTCACTCACTGCCCTGATATCTGTCCGTCGGAGCTT
GTCAAGGTTGGCAAAATTTTGGACTCATTAGATCGAGAGCCAAATCTGCC
TGTTGTACGACCTGTTTTCATTTCCGTGGACCCTGACCGGGATAACGTGG
GGCAATTACGTCATTACGCTCAAGGTGCGTTGCCTGAAGACTCAAAATTG
AGCGCAATTTTAATCTAAATGAAACCTACATCGTCAGTACTTCTGTACCA
TGCGAAAGCCATGCGGCAATGGTCAACGTATCACTGCGGCCATCATCATC
CTTTTTCTCGGCATGGAGCGAGACTTATTCCGAGGCGAAAATTCAGTCAC
TCCGACAGCAACAACGTGAGAGCGACCAAGTCTGAGCCTGGCAGCGCCAG
AAGTGAGAAAATGCCAGTAACGTGGGTTGGTTTAGCCATTATGGCAGTGA
CAGGGACGGGCTTAGCGTACTTTTATCAAGTCGAAAAAGAGCGAATGCAG
CAGCAAGCTCTGGGCAAGGTAACAAGTTACGGAAAGCCGGCTCTTGGAGG
ACCGTGGACGCTCGTTGATTTTACCGGCAGGCCTGTTACGGACGCCGATT
TTCGGGGGGAATTTCTGCTCTTATACTTTGGTTTCACTCACTGCCCTGAT
ATCTGTCCGTCGGAGCTTGTCAAGGTTGGCAAAATTTTGGACTCATTAGA
TCGAGAGCCAAATCTGCCTGTTGTACGACCTGTTTTCATTTCCGTGGACC
CTGACCGGGATAACGTGGGGCAATTACGTCATTACGCTCAAGGTGCGTTG
CCTGAAGACTCAAAATTGAGCGCAATTTTAATCTAAATGAAACCTACATC
GTCAGTACTTCTGTACCATGCGAAAGCCATGCGGCAATGGTCAACGTATC
ACTGCGGCCATCATCATCCTTTTTCTCGGCATGGAGCGAGACTTATTCCG
AGGCGAAAATTCAGTCACTCCGACAGCAACAACGTGAGAGCGACCAAGTC
TGAGCCTGGCAGCGCCAGAAGTGAGAAAATGCCAGTAACGTGGGTTGGTT
TAGCCATTATGGCAGTGACAGGGACGGGCTTAGCGTACTTTTATCAAGTC
GAAAAAGAGCGAATGCAGCAGCAAGCTCTGGGCAAGGTAACAAGTTACGG
AAAGCCGGCTCTTGGAGGACCGTGGACGCTCGTTGATTTTACCGGCAGGC
CTGTTACGGACGCCGATTTTCGGGGGGAATTTCTGCTCTTATACTTTGGT
TTCACTCACTGCCCTGATATCTGTCCGTCGGAGCTTGTCAAGGTTGGCAA
AATTTTGGACTCATTAGATCGAGAGCCAAATCTGCCTGTTGTACGACCTG
TTTTCATTTCCGTGGACCCTGACCGGGATAACGTGGGGCAATTACGTCAT
TACGCTCAAGGTGCGTTGCCTGAAGACTCAAAATTGAGCGCAATTTTAAT
CTAA
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Synonyms
Publications