EWM26709.1, cds3908 (CDS) Nannochloropsis gaditana

Overview
NameEWM26709.1
Unique Namecds3908
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:415140..415790 +
Alignment locationCM002462.1:416049..416507 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26709.1
ProductPeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100001g208.8220.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:415140..415790 +
CM002462.1supercontigCM002462.1:416049..416507 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001478PDZ
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|585108797|gb|EWM26709.1| (Peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MSSSARGFFESLVRRQTRHPHATIIRPSTRTCCKQLLMVLAGMLAMSQSFMLKSPLHAVLDGSVAVSARLAPGGIRVVMSMSCPDRRGLLEGWASVFLAVGLPHVAQPTQRAHAVKDDEYDVAFDAKQPLGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
            MSSSARGFFESLVRRQTRHPHATIIRPSTRTCCKQLLMVLAGMLAMSQSFMLKSPLHAVLDGSVAVSARLAPGGIRVVMSMSCPDRRGLLEGWASVFLAVGLPHVAQPTQRAHAVKDDEYDVAFDAKQPLGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR
Sbjct:    1 MSSSARGFFESLVRRQTRHPHATIIRPSTRTCCKQLLMVLAGMLAMSQSFMLKSPLHAVLDGSVAVSARLAPGGIRVVMSMSCPDRRGLLEGWASVFLAVGLPHVAQPTQRAHAVKDDEYDVAFDAKQPLGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|922858289|gb|KOO26442.1| (fk506 binding-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 175.637 bits (444), Expect = 1.080e-47
Identity = 106/262 (40.46%), Postives = 148/262 (56.49%), Query Frame = 0
Query:  118 DEYDVAFDAKQPLGLALEDF-------GQNGKYRTYVSKTLRGSQATSKG-IRIPALVVAVNGKNVEGLPRKMV-VQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQ--TQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIP 368
            DEY + FD+ +PLGL L+D         + G  R  V+  + G QA S G ++I  +VVAV+G NVE    K V  +L+R   EGR        + VT +D   F E L++         A I+T++AP         Q L++++  V   C   A+ GDL+EI+Y  RL DGT  D  G+   GR GD +L FVLG+Q AG  P  WD+ LVG CVGE+R +  P VL FGAKGL ++ +PP+A ++YDVE++ IN  + P
Sbjct:  138 DEYSLEFDSSRPLGLELKDLRVGFEYGTREGSSRVLVANVVAGGQAASTGKVQIDDIVVAVDGVNVERESAKEVSARLVRAKAEGR-------PVQVTLKDALAFNERLNDLPKDREEAMAPIATRVAPGGGPLGEPEQVLSIRRLEVQSRCTRNAQSGDLVEIRYTGRLADGTVFD--GMELAGRFGDDSLQFVLGKQPAGQFPPAWDVGLVGMCVGERRLLDVPPVLGFGAKGLPKRNVPPNARLLYDVELLAINALSTP 390          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|1210531476|dbj|GAX09832.1| (FK506-binding protein 14 [Fistulifera solaris])

HSP 1 Score: 159.458 bits (402), Expect = 4.776e-42
Identity = 100/263 (38.02%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  130 LGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAP---QTQ--------------AREAQTLTVKKTYVPEICQTGAKYGDLLEIKY-ATRLEDGTFLDATGVST-----PGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
            LGL L D       R YV     GS A+  GI+   +VV +NG++ E    + V  L+ +A   +    E     + FRDPA F   L   +         ++TQ+AP    TQ              A++ Q +TV +   P++C  GA+  DLLEI Y  T +E G   D + V       PGRG D +L+FVLG+Q  G  P GWD+ LVG CVGE+RR+  P  LA+G+KGL R+GIPPDAT+ YDV ++ +NG + P+
Sbjct:   97 LGLELADLDFKTNLRVYVKSVQMGSLASEVGIQQNWVVVGLNGQSTERTNAEGVAVLLSEALNDKRDYVE-----LRFRDPAVFRNKLQNLNV-----NESVTTQVAPAGDTTQRNQDGSVQKGRTVTAQDDQKVTVSQLMPPKMCTRGAQVDDLLEISYIGTVVETGAIFDGSAVKINGQGIPGRGDDVSLFFVLGKQPFGQFPPGWDVGLVGCCVGERRRLLIPPALAYGSKGLPRRGIPPDATLQYDVTLVSLNGLSTPQ 349          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|299473040|emb|CBN77433.1| (FK506-binding protein 2 precursor [Ectocarpus siliculosus])

HSP 1 Score: 159.073 bits (401), Expect = 8.084e-42
Identity = 101/293 (34.47%), Postives = 154/293 (52.56%), Query Frame = 0
Query:   98 LAVGLPHVAQPTQRAHAVKDDEYDVAFDAKQPLGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPA--LVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKS-------------TPGGGEGAEISTQLAPQTQAREAQT---LTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGR-----GGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNI 367
            L +G+         + A++ DE++  FD    +G+ LED    G  R  V + + GS A ++  RI A  ++V+ NG ++E        ++I+ +            L +  RD + F +LL                 T GG E   IST+++P+   RE Q    L   K+     C  GA+ GDLLEI+Y  +LEDG   D + +   GR      GD+TL+FVLG+Q  G  P GWDL L+G CVGE R I  P +L +GA+G+ ++G+P +AT++YDV++IG+NG N+
Sbjct:   72 LGIGIVSTLLEPDASRALESDEFEEVFD-DDAIGIELEDVKYKGSSRVLVKRVVPGS-AAARHPRIKADLVLVSANGVDLERQSATAAKKIIKTSSR---------PLTLVLRDNSLFQQLLKPAPPTSPDNEATGVAVTNGGFE--PISTKVSPEGNGREEQVVKLLNSDKSAECNSCGQGARRGDLLEIEYTAKLEDGKVFDGSSIKVNGREVVGRAGDTTLFFVLGKQPKGQFPPGWDLLLIGMCVGETRLISVPPLLGYGAQGMPKRGVPANATLLYDVKLIGVNGVNM 351          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|1210526705|dbj|GAX14353.1| (FK506-binding protein 14 [Fistulifera solaris])

HSP 1 Score: 155.992 bits (393), Expect = 9.861e-41
Identity = 94/263 (35.74%), Postives = 137/263 (52.09%), Query Frame = 0
Query:  130 LGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAP-----------------QTQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKY-ATRLEDGTFLDATGVST-----PGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
            +GL L D       R YV     GS A+  GI+   +V+ +NG++ E    + V  ++  A   +     G  + + FRDPA F   L   S         ++TQ+AP                 +  +++ Q +TV +   P++C  GA+  DLLEI Y  T +E G   D + V       PGRG D +L+FVLG+Q  G  P GWD+ LVG CVGE+RR+  P  LA+G+ GL R+GIPPDAT+ YDV ++ +NG + P+
Sbjct:   98 IGLELADLDFKTNLRVYVKSIQMGSLASEVGIQQNWVVIGLNGQSTERTNAEGVAMMLSQALNDK-----GDYVELRFRDPAVFRNKLQNLS-----PDESVTTQVAPAGDTTQRNQDGSVQKGRKVTSQDDQKVTVSQLIPPKMCTRGAQVDDLLEISYIGTVVETGAIFDGSAVKINGQGIPGRGDDVSLFFVLGKQPFGQFPPGWDVGLVGCCVGERRRLLIPPALAYGSTGLPRRGIPPDATLQYDVTLVSLNGLSTPQ 350          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|397622139|gb|EJK66587.1| (hypothetical protein THAOC_12486 [Thalassiosira oceanica])

HSP 1 Score: 136.732 bits (343), Expect = 5.143e-33
Identity = 92/267 (34.46%), Postives = 135/267 (50.56%), Query Frame = 0
Query:  130 LGLALEDFGQNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRK-MVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKF---MELLSEKSTPGGGEGAEISTQLAP---QTQAREA--------------QTLTVKKTYVPEICQTGAKYGDLLEIKYATRL-EDGTFLDATGVST-----PGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
            +GL L +      +R  +      S A   GI+   +VV++ G N E        +   +  ++  +   + ++L +TFRDPAKF   +E    K T   GE   +ST++AP    TQ  E               Q +TV +   P++C   A   DL+EI Y  ++ E G   D + V       PGRG D ++YFVLG+Q  G  P GWD+ L G CVGE+RR+  P VL FGA+G  R+ IPP+AT+ YDV ++ +NG   P+
Sbjct:  138 IGLELGEVSFRTNFRVIIKSVAPNSLAQKLGIQPNWVVVSIGGANGERTNAAGAAIYFSQAVKKVLSSPDDSTTLSITFRDPAKFRDELESFPSKDT-SSGELPTVSTKVAPAGDTTQRFEDGSLRRGATVREQGDQVVTVTQLVPPQMCNRRATTDDLVEISYLGQIVETGEIFDGSAVKINGNGIPGRGNDISVYFVLGKQPFGQFPPGWDVGLNGMCVGERRRLIIPPVLGFGAEGNPRRRIPPNATLQYDVTLVSLNGLATPQ 403          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|219111141|ref|XP_002177322.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411857|gb|EEC51785.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 127.487 bits (319), Expect = 2.994e-32
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 0
Query:  241 AREAQTLTVKKTYVPEICQTGAKYGDLLEIKY------ATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
            ++  Q +TV +   P++C+ GA   DLLEI Y        ++ DG+ +   G   PGRG D +LYFVLG+Q  G  P GWD+ +VG CVGE+RR+  P  LA+G+KG+ R+GIPPDAT+ YD+ ++ +NG + P+
Sbjct:    3 SQAEQQITVSQLIPPKLCKRGATTDDLLEISYRGSVVETGQVFDGSAIKIDGGGIPGRGDDVSLYFVLGKQPFGQFPPGWDVGMVGQCVGERRRLIIPPALAYGSKGVPRRGIPPDATLQYDITLVSLNGFSTPQ 137          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|551634261|ref|XP_005819976.1| (hypothetical protein GUITHDRAFT_120829 [Guillardia theta CCMP2712] >gi|428163950|gb|EKX32996.1| hypothetical protein GUITHDRAFT_120829 [Guillardia theta CCMP2712])

HSP 1 Score: 131.339 bits (329), Expect = 2.483e-31
Identity = 95/272 (34.93%), Postives = 145/272 (53.31%), Query Frame = 0
Query:  117 DDEYDVAFDAKQPLGLALED--FGQ-----NGKYRTYVSKTLRGSQATSKG----IRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFME-LLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVKKTYVPEIC-QTGAKYGDLLEIKYATRLEDG-TFLDATGVSTPGRG-GDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGI------PPDATIVYDVEVIGINGNNI 367
            DDE+ + F  + PLG+ L +  F Q         R  V     G QA + G    +R   LVV++NGKN+EG+     ++L+R  +E +       +L + FRDP  F E LL+ K      EG  +STQ+  Q+    ++ L VK   +PE C    A+ GD+LE+KY   L D     D + ++  G   GD +LYFVL  Q     P+ W++ L+G C+GE+RR+  P  L +G +G+ +  I      PP+A ++YDV+++GING N+
Sbjct:   60 DDEFSIDF-GQGPLGMDLIEVRFPQGVPREKQSSRIIVDAVKAGGQAETLGKAKRLRPQVLVVSINGKNIEGMRASDALKLLR--EEKKKSDENNQALQIVFRDPLIFKEKLLNIK------EGGAVSTQVGVQS----SEELVVKTLKMPEDCGAVRAQQGDVLEVKYTGYLADTMEVFDGSSINQNGNFFGDQSLYFVL-NQGQRQAPRAWEVGLLGMCIGEERRLVVPPSLGYGREGVPKGKIVPKLPVPPNAKLIYDVKLVGINGINV 317          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|873230429|emb|CEM11063.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 129.798 bits (325), Expect = 1.210e-30
Identity = 88/239 (36.82%), Postives = 130/239 (54.39%), Query Frame = 0
Query:  129 PLGLALEDFGQNGKYRTYVSKTLRGSQATSK-GIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDAT---GVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGIN 363
            PLG+ LE+  +  K +  V+    GS+A +   IR   L+ +VNG++V+GL    V  LIR  +E     GEG+ L + FR            S     +G   +   A     RE Q + + +  +PE+C   AK GDLLE++Y  RLEDG  +D++   G S PG+G  S++Y +LG++    + + +   L   C GEKRRI  P   AFG++GL  K IPPDAT++YDVE++ I 
Sbjct:  151 PLGIELEETAEGIKVKQLVA----GSEAANNPDIRPGLLLESVNGQSVQGLRLSDVKSLIRMRREMGEKEGEGT-LRLAFRGEGGGRGERDAVS-----QGVADTIDKA----KREGQVI-IDRRKIPEVCSLKAKRGDLLELRYVGRLEDGKLIDSSRLDGRSVPGKGAGSSIYLLLGDKPPRKLIRKFQSGLYSMCEGEKRRITIPPSAAFGSEGLPEKAIPPDATLIYDVELVKIT 374          
BLAST of EWM26709.1 vs. NCBI_GenBank
Match: gi|1072231776|gb|OEU16508.1| (peptidyl-prolyl cis-trans isomerase, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 119.013 bits (297), Expect = 4.110e-29
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 0
Query:  242 REAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRL-EDGTFLDAT-----GVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
            ++ Q ++V +   P++C+ G+   DL+EI Y  R+ E G   D +     G   PGRG D ++ FVLG+Q  G  P GWD+ L   CVGE+RRI  P VLA+G KGL R+GIP  AT+ YDV ++ +NG  +PR
Sbjct:    3 QDDQRISVSQLIPPKMCKRGSTLDDLMEISYIGRVVETGNIFDGSAIMVDGEGIPGRGNDVSISFVLGKQPFGQFPPGWDVGLTDMCVGERRRILVPPVLAYGEKGLPRRGIPSQATLQYDVTLVSLNGLAMPR 136          
The following BLAST results are available for this feature:
BLAST of EWM26709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108797|gb|EWM26709.1|0.000e+0100.00Peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
gi|922858289|gb|KOO26442.1|1.080e-4740.46fk506 binding-like protein [Chrysochromulina sp. C... [more]
gi|1210531476|dbj|GAX09832.1|4.776e-4238.02FK506-binding protein 14 [Fistulifera solaris][more]
gi|299473040|emb|CBN77433.1|8.084e-4234.47FK506-binding protein 2 precursor [Ectocarpus sili... [more]
gi|1210526705|dbj|GAX14353.1|9.861e-4135.74FK506-binding protein 14 [Fistulifera solaris][more]
gi|397622139|gb|EJK66587.1|5.143e-3334.46hypothetical protein THAOC_12486 [Thalassiosira oc... [more]
gi|219111141|ref|XP_002177322.1|2.994e-3244.44predicted protein, partial [Phaeodactylum tricornu... [more]
gi|551634261|ref|XP_005819976.1|2.483e-3134.93hypothetical protein GUITHDRAFT_120829 [Guillardia... [more]
gi|873230429|emb|CEM11063.1|1.210e-3036.82unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072231776|gb|OEU16508.1|4.110e-2944.03peptidyl-prolyl cis-trans isomerase, partial [Frag... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3917rna3917Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications