rna3917, rna3917 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3917
Unique Name	rna3917
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1686
Alignment location	CM002462.1:415104..416626 +

Link to JBrowse

Properties


Property Name	Value
Product	Peptidyl-prolyl cis-trans isomerase
Orig transcript id	gnl\|cribi\|Naga_100001g208.8220.mrna
Orig protein id	gnl\|cribi\|Naga_100001g208.8220
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:415104..416626 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g208	gene3769	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3917	rna3917-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26709.1	cds3908	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:415104..416626+
coding sequence from alignment at CM002462.1:415104..416626+

mRNA sequence

>rna3917 ID=rna3917|Name=rna3917|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp
GTGGCTCGCTCTTTATGGGTAAAATATGGCACAAAAGGTGGAGCAGTCCC
AACTTCGAGAGTGTCTTCCCGGAGATGCCGCCCGGAAGCTGCTGAAGCAA
GCAATTGATACTGCTCAGGCAGCACGGGAGGAGATGAGGGCTCTGCAGGA
GCAAGCCGTCGATAGAGGGGGATTCAGCAGGTCTATTCCGCATGGATACC
TTGTCGGAACGGACAACACAAAGCTCGACAACTTTTATGACTCAAATTAC
GGCGTTGAATTTGTTTCGAAGGCCCTGCCTTTGCCAGGCGAGACGGGCTC
TTATAAACACGATGTAGCACGTACGCATCGTGACAATGACGGGCGAATAG
GCGGTCAAAATAGGAACAAACTCGCAAACTATGGGGCTGGCGATGTTCCA
AACGCAAACAAAAATGTAGGAATGCAGCAGCAGCTTAAGAATGAAAAAGT
GCATGGTAAAGGGGAGGGTGAATTCCACATTGACGACACGAACTCTTACC
GCAGCCAGCGAGCTTCCTCGCCGCCGCTATCTGCGTCCTCGCATAGAAAC
CTTATCAGTGATGCCCATCAGATGTTCCCTTGCATAGCCGCTTCCCATGC
GCCTTGCTCCTCACTAGATGAGCAGCGGCCACGGAATGCCAAGTTGCACG
CACTGAAAGCCCGCGTCGAGAAATTGCTGCTCCGCGAGGAAAAGAACAGG
AAGGGGGAAATAAAGGTGAGAAGAGAAGTAATGTCAGGGATTCCGGATGA
CTTGGACCGAGGCAGAAGCCCGTGGTCGTCTCCGAAGAGTTCGCAGCACA
TCGACTCGCCCACCTCGGACACCAACATGCCAAATGTCCCAGACGTGGAC
CGCCGCTTGGAAGATGGACCGGGCGCTCCAGTATTCAGCGCCTCGTCCAC
CCTTTTGGAACGAGCCATCGCGGAAAAACGGCGGGAAAAGCGTGCTTCTT
TCTCCCTGTCCAGGACGAGCGAGTCGCAGCTCCCACGGTCGCTGCTTCCA
AATTCGGAGGCTGTTGAGGATGCCCCCCGCAATCTTGGTTCTTGCCAGAG
CAGTACGGCGAGCGCTACATGGCACGACGCATGGGTATGGCCGCGCCTGA
CCAAGGAGGAAATGCATGCGGCCCGGCAAAAGCCTCCTCTGCCCGAATGG
GGGAGGACGGGAAGAGGGGAAGGGGGAGGCCTCGATTCACTGACTTAGGA
TGCGGACGAACGTCCAGGGCCACATTCGGATGGGAGGTCTTTGAAACTGT
TTCCCTTGTGTATAGTTTCCAGCGGAGGTGGTTGTAAAGTGGCAAACTGC
CGTAGGATTTGACGGGTACCTCGTGGTACGAGAGAGGAATCGAGCCCGGC
CGGGCGAGCATTCTTGGTCACGAGTTCTTGCTTCTTTGAATATAACTATG
TAGATACATTGAGGTACGCAGCTTTCTAACACAACATCAAGGAAGCCCGC
AGGTCAAATTCACTTCCCCTTTCCCTAGTCCGGTCCTTCTCTCGGTAAAT
TTGCATGGTGTGAGACATGAACGCCTGCTTTCAGTAGATTTTCATGTTCT
TCTTAAGTACTGTGCGCAACAGCGTTCGTGTGATGCATCTCGCCTTCCCG
TATCGCTAGCGTAAGTCTGCTCTCTCGAAGAGATCCCTCCCTCAGGATGC
GCTCGCGCCGGCAAAGTCACGGACCACACACACACA

protein sequence of rna3917

>rna3917-protein ID=rna3917-protein|Name=rna3917|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MSSSARGFFESLVRRQTRHPHATIIRPSTRTCCKQLLMVLAGMLAMSQSF
MLKSPLHAVLDGSVAVSARLAPGGIRVVMSMSCPDRRGLLEGWASVFLAV
GLPHVAQPTQRAHAVKDDEYDVAFDAKQPLGLALEDFGQNGKYRTYVSKT
LRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEG
SSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVK
KTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYF
VLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPD
ATIVYDVEVIGINGNNIPR

mRNA from alignment at CM002462.1:415104..416626+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3917 ID=rna3917|Name=rna3917|organism=Nannochloropsis gaditana|type=mRNA|length=1523bp|location=Sequence derived from alignment at CM002462.1:415104..416626+ (Nannochloropsis gaditana)
TGTAACAGGGTCATTGTCGCTACTGTGCATGGATCCATGTCTTCTTCAGC
CAGAGGCTTTTTCGAGTCCCTTGTCCGCCGACAAACTCGGCATCCTCATG
CCACGATAATACGTCCCTCGACCCGCACATGCTGCAAGCAACTTCTCATG
GTGTTAGCGGGCATGTTGGCCATGAGCCAAAGCTTCATGCTCAAATCACC
GCTACATGCCGTTTTAGACGGCAGCGTTGCTGTGTCGGCACGTCTGGCCC
CCGGGGGCATCCGAGTAGTAATGTCTATGTCATGTCCAGACCGGAGAGGC
CTGCTGGAGGGCTGGGCCTCCGTCTTTCTTGCTGTCGGCTTACCCCACGT
GGCACAGCCTACTCAGCGCGCACATGCTGTCAAGGACGATGAATATGATG
TCGCATTCGACGCGAAACAACCCCTGGGCTTGGCTTTGGAGGATTTCGGG
CAAAACGGCAAATATCGGACTTACGTGAGCAAGACCTTGCGAGGCTCACA
AGCCACGAGCAAAGGGATCCGCATTCCCGCGTTGGTCGTGGCCGTGAATG
GCAAAAATGTCGAAGGGCTCCCACGGAAAATGGTGGTGCAGCTCATACGG
GACGCGCAGGAGGGCCGTAATGGGATGGGTGAGGGATCGTCTTTGATGGT
AACTTTCCGCGACCCGGCTAAGTTCATGGAGCTGCTGGTACGTGTATGTG
CACCGAATGCCTCCGGCTTTCCTGAAGAGTTTGTCCATTTCAACAAATAC
TTCCGCTGCCTACCAGAGCGCTCCGGTTGTCCGTCTACGTCCCCCTAACT
CTGACCCTAGCCCCAAGCCATAGTGCTGGAGCCTGGACgtccattttttc
ccctgtcttctcgcctcccttccgccacccATTCGGTCGCATGAGTCGTC
TCAATCGATTCTTACACCCTCATTCCTTTACATTTGAACCCACAGAGCGA
GAAGAGTAccccgggcgggggggagggagcagaaaTCAGCACTCAGCTCG
CACCCCAGACTCAGGCCCGAGAGGCCCAAACCCTGACAGTTAAGAAGACG
TACGTGCCGGAGATCTGCCAGACGGGGGCCAAGTACGGCGATTTGCTCGA
GATCAAGTACGCGACCCGCTTGGAGGACGGCACCTTTCTGGACGCCACGG
GAGTCTCGAcgcccgggcggggaggggactCGACGCTCTACTTCGTGTTG
GGGGAGCAGGTGGCGGGCACGGTGCCGAAAGGCTGGGATCTGGCCTTGGT
GGGCGCGTGCGTGGGGGAGAAACGCAGGATCAAGACGCCGAGTGTGCTGG
CCTTTGGGGCCAAGGggctgaagaggaaaggtATCCCCCCCGACGCCACC
ATCGTCTacgacgtggaggtgatTGGGATCAACGGCAACAACATTCCCCG
TTGAGGGGGAATACAGACAGTCGTTGCCACGCCTGGCGGCTGCTGTGTAT
GCCCACACGAGCCCAGACCGGTGACTCATGTCAAAAGAAACAGGGGGACT
GGCGAAGGTCCTGAGACTACTGA

Coding sequence (CDS) from alignment at CM002462.1:415104..416626+

>rna3917 ID=rna3917|Name=rna3917|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002462.1:415104..416626+ (Nannochloropsis gaditana)
ATGTCTTCTTCAGCCAGAGGCTTTTTCGAGTCCCTTGTCCGCCGACAAAC
TCGGCATCCTCATGCCACGATAATACGTCCCTCGACCCGCACATGCTGCA
AGCAACTTCTCATGGTGTTAGCGGGCATGTTGGCCATGAGCCAAAGCTTC
ATGCTCAAATCACCGCTACATGCCGTTTTAGACGGCAGCGTTGCTGTGTC
GGCACGTCTGGCCCCCGGGGGCATCCGAGTAGTAATGTCTATGTCATGTC
CAGACCGGAGAGGCCTGCTGGAGGGCTGGGCCTCCGTCTTTCTTGCTGTC
GGCTTACCCCACGTGGCACAGCCTACTCAGCGCGCACATGCTGTCAAGGA
CGATGAATATGATGTCGCATTCGACGCGAAACAACCCCTGGGCTTGGCTT
TGGAGGATTTCGGGCAAAACGGCAAATATCGGACTTACGTGAGCAAGACC
TTGCGAGGCTCACAAGCCACGAGCAAAGGGATCCGCATTCCCGCGTTGGT
CGTGGCCGTGAATGGCAAAAATGTCGAAGGGCTCCCACGGAAAATGGTGG
TGCAGCTCATACGGGACGCGCAGGAGGGCCGTAATGGGATGGGTGAGGGA
TCGTCTTTGATGGTAACTTTCCGCGACCCGGCTAAGTTCATGGAGCTGCT
GAGCGAGAAGAGTAccccgggcgggggggagggagcagaaaTCAGCACTC
AGCTCGCACCCCAGACTCAGGCCCGAGAGGCCCAAACCCTGACAGTTAAG
AAGACGTACGTGCCGGAGATCTGCCAGACGGGGGCCAAGTACGGCGATTT
GCTCGAGATCAAGTACGCGACCCGCTTGGAGGACGGCACCTTTCTGGACG
CCACGGGAGTCTCGAcgcccgggcggggaggggactCGACGCTCTACTTC
GTGTTGGGGGAGCAGGTGGCGGGCACGGTGCCGAAAGGCTGGGATCTGGC
CTTGGTGGGCGCGTGCGTGGGGGAGAAACGCAGGATCAAGACGCCGAGTG
TGCTGGCCTTTGGGGCCAAGGggctgaagaggaaaggtATCCCCCCCGAC
GCCACCATCGTCTacgacgtggaggtgatTGGGATCAACGGCAACAACAT
TCCCCGTTGAATGTCTTCTTCAGCCAGAGGCTTTTTCGAGTCCCTTGTCC
GCCGACAAACTCGGCATCCTCATGCCACGATAATACGTCCCTCGACCCGC
ACATGCTGCAAGCAACTTCTCATGGTGTTAGCGGGCATGTTGGCCATGAG
CCAAAGCTTCATGCTCAAATCACCGCTACATGCCGTTTTAGACGGCAGCG
TTGCTGTGTCGGCACGTCTGGCCCCCGGGGGCATCCGAGTAGTAATGTCT
ATGTCATGTCCAGACCGGAGAGGCCTGCTGGAGGGCTGGGCCTCCGTCTT
TCTTGCTGTCGGCTTACCCCACGTGGCACAGCCTACTCAGCGCGCACATG
CTGTCAAGGACGATGAATATGATGTCGCATTCGACGCGAAACAACCCCTG
GGCTTGGCTTTGGAGGATTTCGGGCAAAACGGCAAATATCGGACTTACGT
GAGCAAGACCTTGCGAGGCTCACAAGCCACGAGCAAAGGGATCCGCATTC
CCGCGTTGGTCGTGGCCGTGAATGGCAAAAATGTCGAAGGGCTCCCACGG
AAAATGGTGGTGCAGCTCATACGGGACGCGCAGGAGGGCCGTAATGGGAT
GGGTGAGGGATCGTCTTTGATGGTAACTTTCCGCGACCCGGCTAAGTTCA
TGGAGCTGCTGAGCGAGAAGAGTAccccgggcgggggggagggagcagaa
aTCAGCACTCAGCTCGCACCCCAGACTCAGGCCCGAGAGGCCCAAACCCT
GACAGTTAAGAAGACGTACGTGCCGGAGATCTGCCAGACGGGGGCCAAGT
ACGGCGATTTGCTCGAGATCAAGTACGCGACCCGCTTGGAGGACGGCACC
TTTCTGGACGCCACGGGAGTCTCGAcgcccgggcggggaggggactCGAC
GCTCTACTTCGTGTTGGGGGAGCAGGTGGCGGGCACGGTGCCGAAAGGCT
GGGATCTGGCCTTGGTGGGCGCGTGCGTGGGGGAGAAACGCAGGATCAAG
ACGCCGAGTGTGCTGGCCTTTGGGGCCAAGGggctgaagaggaaaggtAT
CCCCCCCGACGCCACCATCGTCTacgacgtggaggtgatTGGGATCAACG
GCAACAACATTCCCCGTTGA

Synonyms

Publications