EWM26680.1, cds3904 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|585108768|gb|EWM26680.1| (rab1 family protein [Nannochloropsis gaditana]) HSP 1 Score: 435.261 bits (1118), Expect = 1.886e-154 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0 Query: 1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC Sbjct: 1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|676392073|ref|XP_009039314.1| (hypothetical protein AURANDRAFT_38219 [Aureococcus anophagefferens] >gi|323450177|gb|EGB06060.1| hypothetical protein AURANDRAFT_38219 [Aureococcus anophagefferens]) HSP 1 Score: 330.487 bits (846), Expect = 3.562e-113 Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 0 Query: 1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAA 187 MSKRDYD LFKLVLIGDTGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+ ESF+H+ DWL EVNRYA+EGTCKLLVGNK D DKVV+TE AK++AD LGIPFLETSAKNA+NVEEAFLTMA ELIRLREA +A PG GGA+ Sbjct: 1 MSKRDYDHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREASQSAKPGAGGAS 187
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|298712336|emb|CBJ33128.1| (Rab1A, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 322.013 bits (824), Expect = 7.135e-110 Identity = 160/211 (75.83%), Postives = 173/211 (81.99%), Query Frame = 0 Query: 1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211 MSKRDYD LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT +ESF+H+ DWL+EVNRYASEGT KLL+GNKSDR DKVV + AK++A+ LGIPFLETSAKNASNVEEAFLTMA ELIR REA+ AA+ TV+L CC Sbjct: 1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREAR---------AATQVDNSTVNLGGGGSSASSSSKCC 202
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|698821759|ref|XP_009843908.1| (hypothetical protein H257_16979 [Aphanomyces astaci] >gi|574100967|gb|ETV66537.1| hypothetical protein H257_16979 [Aphanomyces astaci]) HSP 1 Score: 317.39 bits (812), Expect = 6.185e-108 Identity = 157/209 (75.12%), Postives = 172/209 (82.30%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDR-PDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211 RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE G++ P G +LS+ + K+ +CC Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDMTTKKVVSFESAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGSSTTKPHG---------TTLSNDSAKQSNSNSCC 202
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|673047933|ref|XP_008877927.1| (hypothetical protein H310_12581 [Aphanomyces invadans] >gi|574466556|gb|ETV93585.1| hypothetical protein H310_12581 [Aphanomyces invadans]) HSP 1 Score: 310.842 bits (795), Expect = 2.010e-105 Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184 RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE G++ G Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDMSTKKVVSFESAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIREMVGSSTKTHG 184
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|224012645|ref|XP_002294975.1| (rab-type small G protein [Thalassiosira pseudonana CCMP1335] >gi|220969414|gb|EED87755.1| rab-type small G protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 310.457 bits (794), Expect = 4.664e-105 Identity = 158/210 (75.24%), Postives = 179/210 (85.24%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDR-PDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAAS-GKSGDTVSLSSKNDKEGVMKNCC 211 +DYD+LFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+ KKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYD T+ +SF+H+ DWL EVNRYASEGTCKLLVGNKSDR D+ V+TE+AK+FAD+LG+ FLETSAK A NVEEAFLTMA ELI+ REAK AA G G + S GK VSL+S +K+ + CC Sbjct: 10 KDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKMGKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDTTSSDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTADRAVTTEQAKEFADDLGVAFLETSAKTAKNVEEAFLTMAGELIKQREAKIAANGGDGKSDSQGK----VSLTS--EKKAALGGCC 213
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|1173945116|gb|OQR93783.1| (Rab1 family GTPase [Achlya hypogyna]) HSP 1 Score: 309.301 bits (791), Expect = 9.633e-105 Identity = 151/182 (82.97%), Postives = 160/182 (87.91%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184 RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE G + G Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGTSTNPQG 184
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|301123057|ref|XP_002909255.1| (Rab1 family GTPase, putative [Phytophthora infestans T30-4] >gi|262100017|gb|EEY58069.1| Rab1 family GTPase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 308.916 bits (790), Expect = 1.053e-104 Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPD-KVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184 RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKID KT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD D KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE G ++ G Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDNKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDISDNKVVSYETAKAFADSLSIPFLETSAKNAQNVEEAFLTMASELITIREMVGESSRPTG 184
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|669151618|ref|XP_008611371.1| (Ras-like protein Rab-1A [Saprolegnia diclina VS20] >gi|530736845|gb|EQC35087.1| Ras-like protein Rab-1A [Saprolegnia diclina VS20]) HSP 1 Score: 307.76 bits (787), Expect = 3.083e-104 Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184 RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE G A G Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGNAQNPRG 184
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|813131505|ref|XP_012197705.1| (Ras-like protein ORAB-1 [Saprolegnia parasitica CBS 223.65] >gi|641537982|gb|KDO31826.1| Ras-like protein ORAB-1 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 307.76 bits (787), Expect = 3.966e-104 Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 0 Query: 4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184 RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE G A G Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGNAQNPRG 184 The following BLAST results are available for this feature:
BLAST of EWM26680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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