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Properties
| Property Name | Value |
|---|
| Product | rab1 family protein |
| Orig transcript id | gnl|cribi|Naga_100001g213.8191.mrna |
| Orig protein id | gnl|cribi|Naga_100001g213.8191 |
| Gene | Rab1A |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:404091..406305 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3913 ID=rna3913|Name=rna3913|organism=Nannochloropsis gaditana|type=mRNA|length=4100bp
AAACAATTGATTTCCATGATCAAAGAATATTCAGCCATGGCATTATACGC
AATGACAGATATCGCCTAGGGTCGATTAACGCATGTGGATAAGATGACGT
CCGTGCCTTTTTATCAACGGCTGCAAGCCCGAGAGGGAACAGCGCGTGGG
AGTCTGTCATGAATTAGACCAAAATACCGAAAACTTCCATGACACATGCA
CGTCGCTGCGTCCGCCCCCTCATTCCTTTTGATAATTTCGTACACATGTG
CTTTCGGAGCAAGGCTGTCAAAGTGCATGGATGGAAAGTTATTTCGCATG
CCGCCCCGAATACTGAGAGGTATATAACTTTTTGAAGAGACTGGATCATG
GTTGTGGGCTTTACCGGTCCTTGGTATTCCACGGAGGAGGAGCTTTACAC
GTCCCGGGTAATATGCGCGACTGGTGCCATTGCCGGCCTGGCAATCATCC
CGGTAGCCATCACAGCGCGGCATCGGGTCTTCCAAAAAAGAGTTGACTTG
GCCAACGAAAGTGTCGCTCGGTTGTTCGAAAACTTCCTCCTCTTGAAAGC
CATTTTAGATGGCTGTCTTTGCTTAATACTGCTGGGGGGCCTCTTCGTGA
GGGGAGACTCGATCGGCTGCAGTTTCTTGGGGTTCTTTTTCCAGCTCGAA
GAGGTGATGACACTGGCCCTGATCATGCGCATGGTGATGCATCCCTTCCA
TTTCATGCTTAGGAAAAGGGACATGACTGATACGAAAGAGTACTTCAATC
GATCCATCCTGGTTTGCGTGCTAGTGTCCACTTTTGTATGCATCCCGCTT
GCGGCCTCCCGTGAGTTCGGGCGGTCAGGCTCCCTGTGTTGGTTGACGAG
CGTGTCCACACAGTTCTACGCCTTTTTTACTTTGGTCTTCTTCACCTGGA
TTGTGTCCATGATAGTCATCGTCCGTCTGGCCCGCGTCACGCAGCATCGG
CACGCCGTGCGCCTGCTCACTGTCTACCACGGGAACTTCTTCCGGCGTCT
CAGCGACGGCATGGTCACGCGCTTGGTCTTTATTGGTGTGGCCGTCATAC
TCTACGGCTACGTCTTCCGCGTGCTCGCACGTGCGTACATCTGGCGGAAC
GGGGCGGAGTCCCCCTTCCTGAGTGGTATGGAGATGCTGACCATTGCCTT
CCGGGGGCCCGTGGACGCCATTTTTTACTCCCCCAAGGACTGGGTCGTCC
GCCTCGCGCGCTTCTACCGGCATTTCTGTCTGGGCCAAAAGCGTGGGGCC
AAGCGAAGGACCTCCATGGACCTGGCCAGTGCCGCTGAGCCCGTGCGCTT
GACCTTGATCGGGAAAGCCTACCCGCTCCCCTTCTTCACCGACCCCCCGG
TGCCCTCCTTCCAGGACAAGCAGCTTTTCATCAGCACCTACAACCTGGGC
GAGTGCAAGTCGAAAGCCTTGGGGCCGGAGGCGCTCGCGGCCTGGATTCC
CCGGGACCGTGACGTGTACGTGCTGGGTCTGCAGGAGTGCATGGTCTATC
GCCGGCTGGGAGAAGATGTCCTCGCCCATCTGGGGGGCCCGGAGAAGTAC
GTCATGTACCGCCGCGCCATCGGCTCCACCTACCAGTCCCTGGGCTACCA
CGGCTTGATCGCCTTGCTGGTCTTGGCGCGCACGGAGGAGGTGCAAGCCA
ACCGGTTCCTGCTCCACGAGTCCAAGAACAGTGCCGTGGCCCGAGGGAAG
AACCTGGGGGTGACCACCGCCCAGAACAAGGGAGGCGTGGGGCTCGCCTT
CCGCTACTACGACACGACTTTCGCCCTACTCGCCTGCCATCTCTCCTCGG
ACCTGAAGGGGCGCTCTCGGCTGGACAAGCGGAATCAGGATGCCTGGCAG
CTGACTTACGAAACGAATTTGTGGCGGGAGGAGTACCTGCTGGACGTGCA
TCACCAGCACCACGTCTGCATATTCCTTGGGGATGTCAACTACCGCCTGC
GGAGGACGGATCCGGAGAAGGTGCTGGAGGACGTGGCGAGCATTTGCCGG
CGGGAACGAGACGTTCTGTGCGGCGGCCAGGAGGAGTGGCGGCGGGATCG
GTACGCCCTCCTCTTGGCGCCTGGGAATGGGGGCCCGGGCCCTGGGGAGG
GAACGCCGTTGGAGGGGGGGAGGAAAGAGAAGGATGACGGGGTCCGCGAT
AGCGAGCCCTGTGGGGGTGTGGATGAGCCAGGGGTATTGGAAAGCGGGGG
GGACGAAGGGGAGCAGCAGGAGCCAGAGCTGCTGGAGGAGGATCCCGTGG
ACGAGGAGGCGGAGGAGGTCTGCTGCGAGCAGGAGCGGCAAGGGGTCTCG
AGTCTGGTCCGACAAGTCAAGGAATACCTGGAGCCCTCGAACACGGAGAT
GGCCAAGCTGACCATGAAGAGGCTAGCGTCCTCCTACCTCTCCGAGGAGG
GGCCCATGGAGGTTGCCGCCAGGGGCTTGGATGAATCGGGCGACCCGGGC
CGACGGGAAGCTCGGCGCCGGACGTGGAGTGCGCGCCTCTGGTCCTCCAT
ACGGGAGCACCTGTGGATAAGGCCCCAGTCTTCGCTGGAATCGGCCGTGC
GCCATAAGGCGGAGGGGCCTGACCTGGAGGAGGGGAGACGGGACCCGGGC
CCGGCCTCTGGGACGAGGCGCCTGCCCGGGGCGTCCGAGATGGGTGGGCT
CCAGCACCCGCTGCCCCCCCCTGACCAAAGGACCAACTTGTCCTTTTCGC
GGCTGCGGGCCAGGTCGCACGCGTCGTCCTGGGAGCAGCTCTTGCGGGAC
GACGAGATGCGGCAAGGGATGGAGAAGGGGGCAATCTTTTACGGTTTTCA
GGAGGGGAAGATCCGCTTTCCGCCGTCCTACCGGAGAATTAAAGGCCCGC
ACGGGGAGTGTGGGGACTATTGCGATGTAGAAACCCTAAAAACTGCGTAC
AGCACAGTTGTGAAGGAGAAAACTCTTTCGCTCAAAAAGTTGAACCGCGG
GCTCAGGATACTCGCCCCCTACTATCGCTTTCTGCAGCGTGACTCACAAG
GACAGGCCCTGGAAGAGCAGTCGTCGAGTAGGACGCCGTCGTATGCATCC
AGCGGGTGGGAGTCGAGCTCCACTCGCGCCTTTTCCCGCTCGTATAACGG
CAGCGGCATGGAGAACGGCGAAGACGGGAGGGACGGGGAGGATGTGTCCG
CCTCCAGCCGAGCACCGGCGGGGGCCAAGAAGGTCCAAAGGCATGCGACG
ACCCGCATCCCCTCCTACACCGACCGGATCCTCTTGCACGTGGTGGAGGA
CTTCAAAGACCGTATCCGTCTGGGACCCTACGAGATGTGCGACGCTTTGC
AGGGCTCGGACCACCGCCCGGTCTCCACGCTCGTGACCGCCCGCGTGAAT
GTGGCTGTCCGGGGACTCAACTCATTCCACCAAGCCAAAAGTTGCCTCCA
GAACCCGTCCATAGTCCACAATCGCGACGTGATTACGGTCCACGACGCTT
GCTTCTATATTCTGGAGCTTACGGACCTGCGGGTTGAGCTGCTGGCTGCC
AACCAGATGGGAATACATAGGGCGGGCGGGAGCAGTAAGCACGAGGGAGA
CCGTCCGGCAGGTAATGGCTCGGCGCCTCGGGACGAGGCTAGCGTTTTTG
TCCTATTCCCCTTGGACAACGAAGACTGCTTTAGCACCCTCCGTCGGCCA
GCCATCGTGGCAGCGGTTTCCAAACAGATTGTCTTCTTGACAAACAAGGT
CGAGTACAATCCTTTCAACTTCTTCTCCCTCATGTCCTACCGCGCGGCGA
AGAAGAACGGTGTGACTGTCGTCTCCTGTACTCGCATGGACTACGGAGGA
CTCCATGCCATCTTCTCTCTTCGCGATGGTAGAAAGGGACAGCTGGGAAC
CTGCGTTATACCGATCACGAGCAAGGACGGCAGAGTCCAAATGGAACAGA
AGAACGCTGTCTTCCCGATGACGGTGGGAGGTTGTTTGTGCGGGCACCTC
TTTACGTCAGTGCGGATAACTCAGCTTGCCTTAGACATGAGTACTGTACG
AACGTGAGAAGAGAGGAAGAAGTGGCTTGCAAGGAGCCAGGCTCTATGTA
TCAAGTATCCAAAAAGTAAAGCATTAATCTTGACCTCAAAGAGTAAGCCT back to topprotein sequence of rna3913 >rna3913-protein ID=rna3913-protein|Name=rna3913|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRT
VKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHI
QDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLET
SAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSK
NDKEGVMKNCC back to topmRNA from alignment at CM002462.1:404091..406305- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3913 ID=rna3913|Name=rna3913|organism=Nannochloropsis gaditana|type=mRNA|length=2215bp|location=Sequence derived from alignment at CM002462.1:404091..406305- (Nannochloropsis gaditana)
AGGCTCAAAGCTACTTGCTCACAATTGACCTTTACCCATGGTAGCGTAAA
TCGCTGACCCTCTCTCATTTGCTCCTTCACACATTTGCACTAATAGTACT
GACAGCCGTTGCGGAACAGGAAGATCAGAAGCAACCTTCCTCCGTCGACC
GTTTACGAATAAGACAAGTTACGAGTTATACGAAGCACAACCATGTCCAA
GCGTGATTATGACTTTCTTTTCAAGCTCGTGCTGATCGGGGACACGGGAG
TCGGCAAGTCTTGCCTGCTTCTGCGCTTCGCGGATGACGCCTTCACGGAC
TCGTACATTTCCACAATCGGCGTCGACTTTGTAAGTAATTTCTATCAGAC
AGGACAATGAAGAGCTGTCGAAAAGCCATCCGTTAGAAAATTTGTCGCGA
TATTATGCGCGTGCTTGCCGAAATTTTGTAGGTCAAATTACGTTTTCTGT
TGCGGTCCACGACATTTCCCCATTGTAGCTACCGCCCATGCTGCTTCCCA
TCCCTCATTTACTATTCGCTCCCGCCCGCACATTGTTTCGCCATGACAGC
GATTTCGCACAGTGAAAATTGACAAGAAGACGTTTAAGCTGCAAATCGTA
AGTGGGAGGCATGCAGGGAAGCATAAGCTCATAGGCGAGAGAATGCGTCG
AGGGAAGACTATCTGGGCTGGGGAGTAATGCCATGATTTCTCGAATCTAA
CTCACAACGTCAGACGTCAATGGTGCTATGAATTCGAAGCTTATGTAGCA
GTGCCGCTTTATCCTCCTCTTTTCCCCCTGAGAATCTTTTCGTACTCACG
CAACCCTCCCCCTGTCCTGCCCTTCTCGACCAACTACCGCTAGTGGGACA
CGGCAGGGCAGGAACGCTTCCGCACAATCACGTCCGCCTATTACAGAGGG
GCGGATGGTATCATCATGGTATACGACGTTACGAACGAGGTGCGAATAAT
CAAGGGCGGGGGTCATTTAGAGACGCGGGTAAAGGGCAGAGAATTCATGC
CTGTGCATAGAAGTCGCTTTCACGGCCCACTGGGGGGAAAGTATCCTTTC
TCGACACTCCTGTGCTTAATTTCAGTGCTTCGAAGCTGCAATATCCGGGC
CCATTTAATTGCCTTTTTACCTGCCTTCCACTCCCAGGAATCATTCGAGC
ATATTCAAGACTGGCTGAATGAGGTGAATCGCTATGCTTCAGAGGGCACA
TGCAAGCTCCTTGTGGGGAACAAGAGCGACCGACCAGACAAGGTCGTCTC
CACGGAGCGGGCCAAGGTACGCAGGCCTAAAGGCAAATGATGCATTCCAT
AGGACCTGCGAGAGACCGCGCGCCTTGGAGTGATGACACGCAGCGGACGC
GAAAAATCTTATTTTCTTCAATGTAGCCTCACTTACTCTATGTAATTCAA
TTTGACTCGATAAAACAGAAATTCGCGGACGAGCTGGGCATCCCTTTCTT
GGAGACGTCGGCCAAGAACGCCTCAAACGTCGAGGAGGCCTTTCTGACCA
TGGCACAAGAGCTCATTCGTCTCCGTGAGGCCAAGGGTGCAGCCGCTCCT
GGTCCTGGGGGGGCGGCTTCAGGAAAGAGTGGCGATACGGTGTCACTGTC
GAGTAAAAACGACAAGGAAGGAGTAATGAAAAATTGTTGTTGAATTTCTT
CCCTGAAGCTAAATGGAATAGAGTTAGGATGGGAGAATATAAGGGGAATC
TGGTATTGAAGACATGTAAAAGAAACAAGAGTCGAGTAAGTAAAATGTGC
TGAGACATGATTCTGAGTATTGTAAGGGGTGGTGGGCTCTGGGAACAGAC
AACATGCTTGTAGAAGGAGCACATGGAGGGGTTCGTATAGAGAAGGAAAG
GTGGGCCGTAAGATTAGTCGGTAGTAATGACAAAATGGGAAGACAAAATA
TTTGAAGTCGACGCTATCTGTATTTATGTGTGCATGCTTTGGAACAGTGC
GCGAGATGAGTTAGTGAACTCGATCAATCTATTTGAGAAAGAAGAAAATA
TCACCTTGCATGGGTATGTTTGTCTTACAAACCAGCAGCAAACGCAGAAG
GCGGACTAAAGGAACGCACACGTGAGTACAAAGGAAGGATTAAGAACATA
ACATGTACTCGTGACGAGAATTGTAGGATTAATGGTCAAAATGACATGGT
TGCCTATTACTCTGTATGCTTTCACATGACACACAGAAGTAGATGAAAAC
CTTTTACACAAAATC back to topCoding sequence (CDS) from alignment at CM002462.1:404091..406305- >rna3913 ID=rna3913|Name=rna3913|organism=Nannochloropsis gaditana|type=CDS|length=3180bp|location=Sequence derived from alignment at CM002462.1:404091..406305- (Nannochloropsis gaditana)
AAATTCGCGGACGAGCTGGGCATCCCTTTCTTGGAGACGTCGGCCAAGAA
CGCCTCAAACGTCGAGGAGGCCTTTCTGACCATGGCACAAGAGCTCATTC
GTCTCCGTGAGGCCAAGGGTGCAGCCGCTCCTGGTCCTGGGGGGGCGGCT
TCAGGAAAGAGTGGCGATACGGTGTCACTGTCGAGTAAAAACGACAAGGA
AGGAGTAATGAAAAATTGTTGTTGAGAATCATTCGAGCATATTCAAGACT
GGCTGAATGAGGTGAATCGCTATGCTTCAGAGGGCACATGCAAGCTCCTT
GTGGGGAACAAGAGCGACCGACCAGACAAGGTCGTCTCCACGGAGCGGGC
CAAGTGGGACACGGCAGGGCAGGAACGCTTCCGCACAATCACGTCCGCCT
ATTACAGAGGGGCGGATGGTATCATCATGGTATACGACGTTACGAACGAG
CGATTTCGCACAGTGAAAATTGACAAGAAGACGTTTAAGCTGCAAATCAT
GTCCAAGCGTGATTATGACTTTCTTTTCAAGCTCGTGCTGATCGGGGACA
CGGGAGTCGGCAAGTCTTGCCTGCTTCTGCGCTTCGCGGATGACGCCTTC
ACGGACTCGTACATTTCCACAATCGGCGTCGACTTTAAATTCGCGGACGA
GCTGGGCATCCCTTTCTTGGAGACGTCGGCCAAGAACGCCTCAAACGTCG
AGGAGGCCTTTCTGACCATGGCACAAGAGCTCATTCGTCTCCGTGAGGCC
AAGGGTGCAGCCGCTCCTGGTCCTGGGGGGGCGGCTTCAGGAAAGAGTGG
CGATACGGTGTCACTGTCGAGTAAAAACGACAAGGAAGGAGTAATGAAAA
ATTGTTGTTGAGAATCATTCGAGCATATTCAAGACTGGCTGAATGAGGTG
AATCGCTATGCTTCAGAGGGCACATGCAAGCTCCTTGTGGGGAACAAGAG
CGACCGACCAGACAAGGTCGTCTCCACGGAGCGGGCCAAGTGGGACACGG
CAGGGCAGGAACGCTTCCGCACAATCACGTCCGCCTATTACAGAGGGGCG
GATGGTATCATCATGGTATACGACGTTACGAACGAGCGATTTCGCACAGT
GAAAATTGACAAGAAGACGTTTAAGCTGCAAATCATGTCCAAGCGTGATT
ATGACTTTCTTTTCAAGCTCGTGCTGATCGGGGACACGGGAGTCGGCAAG
TCTTGCCTGCTTCTGCGCTTCGCGGATGACGCCTTCACGGACTCGTACAT
TTCCACAATCGGCGTCGACTTTAAATTCGCGGACGAGCTGGGCATCCCTT
TCTTGGAGACGTCGGCCAAGAACGCCTCAAACGTCGAGGAGGCCTTTCTG
ACCATGGCACAAGAGCTCATTCGTCTCCGTGAGGCCAAGGGTGCAGCCGC
TCCTGGTCCTGGGGGGGCGGCTTCAGGAAAGAGTGGCGATACGGTGTCAC
TGTCGAGTAAAAACGACAAGGAAGGAGTAATGAAAAATTGTTGTTGAGAA
TCATTCGAGCATATTCAAGACTGGCTGAATGAGGTGAATCGCTATGCTTC
AGAGGGCACATGCAAGCTCCTTGTGGGGAACAAGAGCGACCGACCAGACA
AGGTCGTCTCCACGGAGCGGGCCAAGTGGGACACGGCAGGGCAGGAACGC
TTCCGCACAATCACGTCCGCCTATTACAGAGGGGCGGATGGTATCATCAT
GGTATACGACGTTACGAACGAGCGATTTCGCACAGTGAAAATTGACAAGA
AGACGTTTAAGCTGCAAATCATGTCCAAGCGTGATTATGACTTTCTTTTC
AAGCTCGTGCTGATCGGGGACACGGGAGTCGGCAAGTCTTGCCTGCTTCT
GCGCTTCGCGGATGACGCCTTCACGGACTCGTACATTTCCACAATCGGCG
TCGACTTTAAATTCGCGGACGAGCTGGGCATCCCTTTCTTGGAGACGTCG
GCCAAGAACGCCTCAAACGTCGAGGAGGCCTTTCTGACCATGGCACAAGA
GCTCATTCGTCTCCGTGAGGCCAAGGGTGCAGCCGCTCCTGGTCCTGGGG
GGGCGGCTTCAGGAAAGAGTGGCGATACGGTGTCACTGTCGAGTAAAAAC
GACAAGGAAGGAGTAATGAAAAATTGTTGTTGAGAATCATTCGAGCATAT
TCAAGACTGGCTGAATGAGGTGAATCGCTATGCTTCAGAGGGCACATGCA
AGCTCCTTGTGGGGAACAAGAGCGACCGACCAGACAAGGTCGTCTCCACG
GAGCGGGCCAAGTGGGACACGGCAGGGCAGGAACGCTTCCGCACAATCAC
GTCCGCCTATTACAGAGGGGCGGATGGTATCATCATGGTATACGACGTTA
CGAACGAGCGATTTCGCACAGTGAAAATTGACAAGAAGACGTTTAAGCTG
CAAATCATGTCCAAGCGTGATTATGACTTTCTTTTCAAGCTCGTGCTGAT
CGGGGACACGGGAGTCGGCAAGTCTTGCCTGCTTCTGCGCTTCGCGGATG
ACGCCTTCACGGACTCGTACATTTCCACAATCGGCGTCGACTTTAAATTC
GCGGACGAGCTGGGCATCCCTTTCTTGGAGACGTCGGCCAAGAACGCCTC
AAACGTCGAGGAGGCCTTTCTGACCATGGCACAAGAGCTCATTCGTCTCC
GTGAGGCCAAGGGTGCAGCCGCTCCTGGTCCTGGGGGGGCGGCTTCAGGA
AAGAGTGGCGATACGGTGTCACTGTCGAGTAAAAACGACAAGGAAGGAGT
AATGAAAAATTGTTGTTGAGAATCATTCGAGCATATTCAAGACTGGCTGA
ATGAGGTGAATCGCTATGCTTCAGAGGGCACATGCAAGCTCCTTGTGGGG
AACAAGAGCGACCGACCAGACAAGGTCGTCTCCACGGAGCGGGCCAAGTG
GGACACGGCAGGGCAGGAACGCTTCCGCACAATCACGTCCGCCTATTACA
GAGGGGCGGATGGTATCATCATGGTATACGACGTTACGAACGAGCGATTT
CGCACAGTGAAAATTGACAAGAAGACGTTTAAGCTGCAAATCATGTCCAA
GCGTGATTATGACTTTCTTTTCAAGCTCGTGCTGATCGGGGACACGGGAG
TCGGCAAGTCTTGCCTGCTTCTGCGCTTCGCGGATGACGCCTTCACGGAC
TCGTACATTTCCACAATCGGCGTCGACTTT back to top
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