EWM26680.1, cds3904 (CDS) Nannochloropsis gaditana

Overview
NameEWM26680.1
Unique Namecds3904
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:405976..406113 -
Alignment locationCM002462.1:405709..405756 -
Alignment locationCM002462.1:405367..405462 -
Alignment locationCM002462.1:405040..405168 -
Alignment locationCM002462.1:404663..404887 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26680.1
Productrab1 family protein
Orig transcript idgnl|cribi|Naga_100001g213.8191.mrna
GeneRab1A
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:405976..406113 -
CM002462.1supercontigCM002462.1:405709..405756 -
CM002462.1supercontigCM002462.1:405367..405462 -
CM002462.1supercontigCM002462.1:405040..405168 -
CM002462.1supercontigCM002462.1:404663..404887 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0015031protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR002041Ran_GTPase
IPR003578Small_GTPase_Rho
IPR003579Small_GTPase_Rab_type
IPR020849Small_GTPase_Ras
IPR001806Small_GTPase
Homology
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|585108768|gb|EWM26680.1| (rab1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 435.261 bits (1118), Expect = 1.886e-154
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211
            MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC
Sbjct:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|676392073|ref|XP_009039314.1| (hypothetical protein AURANDRAFT_38219 [Aureococcus anophagefferens] >gi|323450177|gb|EGB06060.1| hypothetical protein AURANDRAFT_38219 [Aureococcus anophagefferens])

HSP 1 Score: 330.487 bits (846), Expect = 3.562e-113
Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 0
Query:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAA 187
            MSKRDYD LFKLVLIGDTGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+ ESF+H+ DWL EVNRYA+EGTCKLLVGNK D  DKVV+TE AK++AD LGIPFLETSAKNA+NVEEAFLTMA ELIRLREA  +A PG GGA+
Sbjct:    1 MSKRDYDHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREASQSAKPGAGGAS 187          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|298712336|emb|CBJ33128.1| (Rab1A, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 322.013 bits (824), Expect = 7.135e-110
Identity = 160/211 (75.83%), Postives = 173/211 (81.99%), Query Frame = 0
Query:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211
            MSKRDYD LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT +ESF+H+ DWL+EVNRYASEGT KLL+GNKSDR DKVV +  AK++A+ LGIPFLETSAKNASNVEEAFLTMA ELIR REA+         AA+     TV+L            CC
Sbjct:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREAR---------AATQVDNSTVNLGGGGSSASSSSKCC 202          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|698821759|ref|XP_009843908.1| (hypothetical protein H257_16979 [Aphanomyces astaci] >gi|574100967|gb|ETV66537.1| hypothetical protein H257_16979 [Aphanomyces astaci])

HSP 1 Score: 317.39 bits (812), Expect = 6.185e-108
Identity = 157/209 (75.12%), Postives = 172/209 (82.30%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDR-PDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSKNDKEGVMKNCC 211
            RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD    KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE  G++   P G          +LS+ + K+    +CC
Sbjct:    3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDMTTKKVVSFESAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGSSTTKPHG---------TTLSNDSAKQSNSNSCC 202          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|673047933|ref|XP_008877927.1| (hypothetical protein H310_12581 [Aphanomyces invadans] >gi|574466556|gb|ETV93585.1| hypothetical protein H310_12581 [Aphanomyces invadans])

HSP 1 Score: 310.842 bits (795), Expect = 2.010e-105
Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184
            RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD    KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE  G++    G
Sbjct:    3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDMSTKKVVSFESAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIREMVGSSTKTHG 184          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|224012645|ref|XP_002294975.1| (rab-type small G protein [Thalassiosira pseudonana CCMP1335] >gi|220969414|gb|EED87755.1| rab-type small G protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 310.457 bits (794), Expect = 4.664e-105
Identity = 158/210 (75.24%), Postives = 179/210 (85.24%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDR-PDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAAS-GKSGDTVSLSSKNDKEGVMKNCC 211
            +DYD+LFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+ KKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYD T+ +SF+H+ DWL EVNRYASEGTCKLLVGNKSDR  D+ V+TE+AK+FAD+LG+ FLETSAK A NVEEAFLTMA ELI+ REAK AA  G G + S GK    VSL+S  +K+  +  CC
Sbjct:   10 KDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKMGKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDTTSSDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTADRAVTTEQAKEFADDLGVAFLETSAKTAKNVEEAFLTMAGELIKQREAKIAANGGDGKSDSQGK----VSLTS--EKKAALGGCC 213          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|1173945116|gb|OQR93783.1| (Rab1 family GTPase [Achlya hypogyna])

HSP 1 Score: 309.301 bits (791), Expect = 9.633e-105
Identity = 151/182 (82.97%), Postives = 160/182 (87.91%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184
            RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD    KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE  G +    G
Sbjct:    3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGTSTNPQG 184          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|301123057|ref|XP_002909255.1| (Rab1 family GTPase, putative [Phytophthora infestans T30-4] >gi|262100017|gb|EEY58069.1| Rab1 family GTPase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 308.916 bits (790), Expect = 1.053e-104
Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPD-KVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184
            RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKID KT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD  D KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE  G ++   G
Sbjct:    3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDNKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDISDNKVVSYETAKAFADSLSIPFLETSAKNAQNVEEAFLTMASELITIREMVGESSRPTG 184          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|669151618|ref|XP_008611371.1| (Ras-like protein Rab-1A [Saprolegnia diclina VS20] >gi|530736845|gb|EQC35087.1| Ras-like protein Rab-1A [Saprolegnia diclina VS20])

HSP 1 Score: 307.76 bits (787), Expect = 3.083e-104
Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184
            RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD    KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE  G A    G
Sbjct:    3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGNAQNPRG 184          
BLAST of EWM26680.1 vs. NCBI_GenBank
Match: gi|813131505|ref|XP_012197705.1| (Ras-like protein ORAB-1 [Saprolegnia parasitica CBS 223.65] >gi|641537982|gb|KDO31826.1| Ras-like protein ORAB-1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 307.76 bits (787), Expect = 3.966e-104
Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 0
Query:    4 RDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSD-RPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPG 184
            RDYD LFKLVLIGD+GVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWLNEVNRYASEGTCKLLVGNKSD    KVVS E AK FAD L IPFLETSAKNA NVEEAFLTMA ELI +RE  G A    G
Sbjct:    3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRELVGNAQNPRG 184          
The following BLAST results are available for this feature:
BLAST of EWM26680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108768|gb|EWM26680.1|1.886e-154100.00rab1 family protein [Nannochloropsis gaditana][more]
gi|676392073|ref|XP_009039314.1|3.562e-11385.03hypothetical protein AURANDRAFT_38219 [Aureococcus... [more]
gi|298712336|emb|CBJ33128.1|7.135e-11075.83Rab1A, RAB family GTPase [Ectocarpus siliculosus][more]
gi|698821759|ref|XP_009843908.1|6.185e-10875.12hypothetical protein H257_16979 [Aphanomyces astac... [more]
gi|673047933|ref|XP_008877927.1|2.010e-10582.97hypothetical protein H310_12581 [Aphanomyces invad... [more]
gi|224012645|ref|XP_002294975.1|4.664e-10575.24rab-type small G protein [Thalassiosira pseudonana... [more]
gi|1173945116|gb|OQR93783.1|9.633e-10582.97Rab1 family GTPase [Achlya hypogyna][more]
gi|301123057|ref|XP_002909255.1|1.053e-10482.97Rab1 family GTPase, putative [Phytophthora infesta... [more]
gi|669151618|ref|XP_008611371.1|3.083e-10483.52Ras-like protein Rab-1A [Saprolegnia diclina VS20]... [more]
gi|813131505|ref|XP_012197705.1|3.966e-10483.52Ras-like protein ORAB-1 [Saprolegnia parasitica CB... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3913rna3913Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications