EWM26819.1, cds3864 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|585108910|gb|EWM26819.1| (ribosomal RNA large subunit methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 260
MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI
Sbjct: 1 MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 260
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|585108909|gb|EWM26818.1| (ribosomal RNA large subunit methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 457.218 bits (1175), Expect = 1.008e-160 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query: 37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 260
VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI
Sbjct: 88 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 311
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|750962562|gb|KIK19460.1| (hypothetical protein PISMIDRAFT_683110 [Pisolithus microcarpus 441]) HSP 1 Score: 108.227 bits (269), Expect = 1.909e-24 Identity = 77/234 (32.91%), Postives = 111/234 (47.44%), Query Frame = 0
Query: 34 VCSVIDLGCAPGGWSQVVMQA---IHPPSASSSLSGTSDNHVRAANNTPR-SLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYED-----VRILKPKASRGESGEQYMLARGFKG 258
+C+V+DLG APGGWSQVV + I+P + + + + + + +G G V+ +DL P+AP+PGV + DF + + A++ AL GM AD+ILSDMA + SG++ RD +LD+ + V FA + T K+R T+L K F E L + R Y D V +KP ASR S E Y L RG+KG
Sbjct: 64 ICAVVDLGAAPGGWSQVVAEKLGWINPALSDEDMDIAPNFGLNERARIDKFGSWSSTAGRGVVVAVDLLPIAPIPGVHTLQMDFLSPQAAGAVKTALSTPENPSGM-----------------ADIILSDMAANFSGNRVRDVESSLDICHSVFQFAKDNLHVAAANHR---TDKRRGGTLLLKHF----EHPLSKGFREEYLDPNFNSVNYIKPSASRAGSAEGYWLCRGWKG 273
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|751681038|gb|KIM31195.1| (hypothetical protein M408DRAFT_255489 [Serendipita vermifera MAFF 305830]) HSP 1 Score: 108.227 bits (269), Expect = 2.483e-24 Identity = 83/230 (36.09%), Postives = 120/230 (52.17%), Query Frame = 0
Query: 35 CSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEG-MWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNS-----ALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
C V+DLGCAPGGW+Q AS L G S N++ ++ P +V+G+DL P PV G F+ G+F + E Q LR+ + +G D M+ + G + ++ G G AD+I+SDMAP+LSG++ D L+L VLAFA T L++V NS +L K L + E+EL A + ++ KP+ASR S E Y + +GFKG
Sbjct: 95 CIVVDLGCAPGGWTQ----------ASLELLGFSRNNMSEESDEDEQSHLP-----QVVGVDLLPTEPVLGARFLQGNFLDEEVQRELRRVI---LGYDQMEEQPGTIRQEPQG---GVADIIISDMAPNLSGNRVADIEAGLELCRSVLAFAKT--NLRQVGANSKGFGGSLVIKHFAAPELTRF----REQEL---APLFSQKIKYTKPEASRSRSSEAYFVCQGFKG 294
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|940339600|ref|WP_054964713.1| (RlmE family RNA methyltransferase [Thiohalorhabdus denitrificans] >gi|939542937|gb|KPV41647.1| 23S rRNA methyltransferase [Thiohalorhabdus denitrificans]) HSP 1 Score: 105.531 bits (262), Expect = 3.118e-24 Identity = 78/222 (35.14%), Postives = 101/222 (45.50%), Query Frame = 0
Query: 37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
V+DLG APGGW+QV ++ + G S GRV+GIDL PM PV G + + DF+ E ALR R++ G G D +LSDMAP+LSG K D R ++L L A V + T++ K F+G EELLR R+ + V KP ASRGES EQY++ARGF G
Sbjct: 50 VVDLGAAPGGWTQVAVERV----------GAS---------------------GRVVGIDLLPMDPVSGSTLLEADFAADEGLEALR----REIDG------------------GEVDAVLSDMAPELSGIKVADQARAMELCELALELAREVL--------------RPGGTLVMKAFQGEGFEELLRALRAEFRSVAARKPDASRGESSEQYLVARGFLG 204
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|1081443753|emb|SCY56540.1| (23S rRNA (uridine2552-2'-O)-methyltransferase [Thiohalorhabdus denitrificans]) HSP 1 Score: 105.531 bits (262), Expect = 3.208e-24 Identity = 78/222 (35.14%), Postives = 101/222 (45.50%), Query Frame = 0
Query: 37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
V+DLG APGGW+QV ++ + G S GRV+GIDL PM PV G + + DF+ E ALR R++ G G D +LSDMAP+LSG K D R ++L L A V + T++ K F+G EELLR R+ + V KP ASRGES EQY++ARGF G
Sbjct: 49 VVDLGAAPGGWTQVAVERV----------GAS---------------------GRVVGIDLLPMDPVSGSTLLEADFAADEGLEALR----REIDG------------------GEVDAVLSDMAPELSGIKVADQARAMELCELALELAREVL--------------RPGGTLVMKAFQGEGFEELLRALRAEFRSVAARKPDASRGESSEQYLVARGFLG 203
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|653050913|ref|WP_027302481.1| (RlmE family RNA methyltransferase [Rhodospirillales bacterium URHD0088]) HSP 1 Score: 105.531 bits (262), Expect = 7.929e-24 Identity = 75/222 (33.78%), Postives = 96/222 (43.24%), Query Frame = 0
Query: 37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
V+DLGCAPGGW+QV + + P S + G+G VIGID+ PM PVPG + DF + L+ L G ADV+LSDMA +G DH R + LA FA V A T LCK+F+G E ELL + ++ VR KP ASR ES E Y++A GF+G
Sbjct: 84 VVDLGCAPGGWTQVAAERVKPASTA--------------------------GQGAVIGIDILPMDPVPGAMVIELDFLDPSAPDRLKALL-----------------------NGPADVVLSDMAAPTTGHASTDHIRIIALAEAAYEFAHEVLAPGG--------------TFLCKVFQGGAEGELLAALKRDFKTVRHAKPPASRAESAEVYVVATGFRG 242
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|1067081634|ref|XP_018024597.1| (PREDICTED: rRNA methyltransferase 2, mitochondrial-like [Hyalella azteca]) HSP 1 Score: 105.916 bits (263), Expect = 2.329e-23 Identity = 68/224 (30.36%), Postives = 104/224 (46.43%), Query Frame = 0
Query: 36 SVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGG 259
+V++ G +PG W+QV +Q +P + + + +S G V+ +DL+P++PVPG +FV GDF++ +TQ + Q L + V DV+LSDMAP +G K DH R + LA FA VR + LCK++ G + ++ LR YED R++KP +SR S E ++ ARG K
Sbjct: 133 TVLECGASPGAWTQVAVQHCNPEDSPT--------------------YKSSSPTGCVVAVDLQPVSPVPGATFVCGDFTSPDTQQRVLQLLPKGV-----------------------DVVLSDMAPSATGIKEHDHTRIMRLAVCAAHFA--------VRHATP------HSCFLCKVWAGGEVDKFLRQLSLLYEDARLVKPPSSRSNSAELFVYARGLKSS 299
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|751715435|gb|KIM64446.1| (hypothetical protein SCLCIDRAFT_15229 [Scleroderma citrinum Foug A]) HSP 1 Score: 104.76 bits (260), Expect = 3.558e-23 Identity = 80/238 (33.61%), Postives = 116/238 (48.74%), Query Frame = 0
Query: 31 NMVVCSVIDLGCAPGGWSQVVMQA---IHPPSASSSLS------GTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEEL-LRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
N V +V+DLG APGGWSQVV + + P + +S + G SD A + G G ++ +DL P+AP+PGV + DF + A++ AL GM ADVILSDMA + +G+K D +LD+ + V FA +++V + LTK R T+L K F +E +++ + + V +KP ASR ES E Y L RG+KG
Sbjct: 61 NSDVRAVVDLGAAPGGWSQVVAEKLGWVTPCTPENSYADLMPDFGLSD----LARIEKFGSWSSNVGRGVIVAVDLLPIAPIPGVHTLQMDFLSPRAADAIKAALTTPENPSGM-----------------ADVILSDMAANFTGNKAHDVEMSLDICHSVFEFAINNLNVREVHEG-VLTK--RGGTLLLKHFDHPLSQEFRVKYLKPNFLSVNYIKPSASRAESAEGYWLCRGWKG 274
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|595486354|gb|EXX72537.1| (Mrm2p [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 103.605 bits (257), Expect = 4.045e-23 Identity = 66/220 (30.00%), Postives = 102/220 (46.36%), Query Frame = 0
Query: 38 IDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFK 257
ID G APGGWSQVV + + P +++ D + N +I +DL + P+PGV+ + GDF++ TQ +++ L E ADVILSDMAP+ SG +F DH ++++L L FA+ V + T LCK G + E + +++++ VR KP+A R +S E Y + G+K
Sbjct: 64 IDCGAAPGGWSQVVSRKVLPEFDTTT-EEIKDFETKLNGNL-------------IIAVDLLTIEPIPGVNVIQGDFTHISTQQKVKELLK----------------------EREADVILSDMAPNFSGQRFIDHVKSMELCEFSLNFAERVL--------------KSGGTFLCKFLMGESDHEFRNNLKTKFDIVRHEKPQAVRKKSTEGYFMCLGYK 233 The following BLAST results are available for this feature:
BLAST of EWM26819.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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