rna3873, rna3873 (mRNA) Nannochloropsis gaditana

Overview
Namerna3873
Unique Namerna3873
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1637
Alignment locationCM002462.1:287712..289327 -

Link to JBrowse

Properties
Property NameValue
Productribosomal RNA large subunit methyltransferase
Orig transcript idgnl|cribi|Naga_100018g32.2799.mrna
Orig protein idgnl|cribi|Naga_100018g32.2799
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:287712..289327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g32gene3725Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3873rna3873-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26819.1cds3864Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3873 ID=rna3873|Name=rna3873|organism=Nannochloropsis gaditana|type=mRNA|length=1637bp
TTCCTGCCCTCAGTCATTTTTCCCGGGGTTTACGTAATCTCAGTTCCACT
CAGTACGGCCTCGCTTTGCGCTTCTATTGTAATAGAGAAGAGATTGACAA
TAGTTGATCTTCCTCCACGATAAGAGTGCTCACGGCCGGGTTGTAATGCG
ATTGCTCACATCCTGCATAAATCAACCTATTTGACTTACGCAGATAGCTA
CAAGTAGCCAACAACCTCCCCACCCAGTTTATTTTAAGTACCTCAGCATA
AATTGATGCAACAAGTGGAAAATTGCAATTTAAGAATGTACAGTATTTTG
AGCAGAACTATTACCATTGTGACCTAGCATGATTTCTGTTCTTCAGCGCG
CTGCCGCACCAAGGGTATTTGGGGCGGGTCTCGACTGTCGTCTTCCCTTG
CTAGAGCGTCACGCGGGCAATAGCCCCAGTCATGGTGTTGGCACCATTGT
TTCTGTGCACCAATGGATTCGTCGCCACGTCAACGATCCTTTTGTCAAAG
CCTCCCGCAAGCTAGAGCTCCGTTCCCGTGCTGCTTTCAAGCTCAAGGAA
ATGCAAGAAAAGTGCCGTATCATGCGCCCCGGTGACTGTGTAATTGACCT
CGGCTGCGCCCCTGGAGGCTGGAGTCAGGTCGTAATGCAAGCCATCCACC
CGCCCTCTGCGTCCTCTTCCCTTTCCGGCACCAGCGATAACCATGTAAGA
GCAGCAAATAACACTCCGCGCTCCCTTTTTCCTCCTGCCTCAGGAGAGGG
TCGGGTTATAGGGATCGATTTGCGGCCGATGGCACCGGTGCCGGGCGTTT
CGTTCGTCTTGGGGGACTTCAGCAATGCGGAGACCCAGGCGGCTCTACGA
CAAGCCCTGGGACGCGACGTGGGAGGGGACGGAATGCAGTTGGAAGAAGG
GATGTGGAAAGACGGAGGTGGAGAATGCGAGGGCACAGCTGACGTGATTC
TCTCTGACATGGCTCCGGACTTGTCGGGGGACAAATTTAGGGACCATCGG
CGCACACTTGATCTAGCATACCAGGTGTTGGCTTTTGCGGACACGGTATT
TGCCTTGCAGAAAGTACGCAAGAACTCTGCCCTTACGAAAAAGCAACGCA
GGAAAACAGTCTTATGTAAGCTTTTCAAAGGGCGAGATGAGGAGGAACTC
CTGAGGCACGCACGAAGTCGGTACGAAGACGTCCGTATTTTGAAGCCGAA
AGCATCCCGTGGCGAGAGCGGGGAGCAATACATGCTAGCCCGAGGATTCA
AAGGAGGGATTTGAGATGGCGTGGATGCGCACCTCTCTCAATATGTAAAC
ACTCTCTTAAGGAAAATGAATACTCAGCAGCGATTTGTTGGGTTTTATCC
AACCTTGCGCGGAGAAAAGTGTAGGACTTCATTCCTAGAGTCTATGAGTA
TAAAGAGGTTTTTCAAGCTGTTCTCCAGCTTCTTATCTTTTCTTTTCCTC
TCTTGCGAACATGTGGCAATGTCTGTCTAGTCATTTTAAGCTACGGTATG
TCTAAACGTAGATATTACCAGTGTGCTCACGCAGTTGCAGAAGTTTCTTC
TTCGAATCCATCAGCTCAATACTGTAATTAAAAATGTTAAGCTGGCCCCC
ATCCCGTTCTAACAAACATTATCATGTCATTTGACTG
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protein sequence of rna3873

>rna3873-protein ID=rna3873-protein|Name=rna3873|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQV
VMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPM
APVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECE
GTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSA
LTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQY
MLARGFKGGI
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mRNA from alignment at CM002462.1:287712..289327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3873 ID=rna3873|Name=rna3873|organism=Nannochloropsis gaditana|type=mRNA|length=1616bp|location=Sequence derived from alignment at CM002462.1:287712..289327- (Nannochloropsis gaditana)
TGTACGGGCTTGCGAGGTTGAAGGAGTCGATGTGCAAGTCAATGGATACA
TGTTATTCGTGTTTTAGCTGGTCACGATAATACACTTGTACTTGTACGTG
ATTGAAAACCAGTCCTTGCCTTCTTTTGTTTTTTCAGCGTTCTCATCCCT
TTAACATCTACACTGCGAATTTTCCATGCACATCATCGTATGCGTCCTTG
CAAAGGAAATGCAAGAAAAGTGCCGTATCATGCGCCCCGGTGACTGGTGA
GTGTTGAAAGCCGTTGAGCTGCTCTGCCAGAGTGCTTGGCCCTTCACATC
GATGGGATGGAACCCATGTGTCCATCGATGTTCAGACCTTTTCCTTCCTG
CTTCACCCGTTTCTCTTGAAATTTGCTCACCTTCATCACCCAACATGGTT
GTGTGTAGTGTAATTGACCTCGGCTGCGCCCCTGGAGGCTGGAGTCAGGT
CGTAATGCAAGCCATCCACCCGCCCTCTGCGTCCTCTTCCCTTTCCGGCA
CCAGCGATAACCATGTAAGAGCAGCAAATAACACTCCGCGCTCCCTTTTT
CCTCCTGCCTCAGGAGAGGGTCGGGTTATAGGGATCGATTTGCGGCCGAT
GGCACCGGTGCCGGGCGTTTCGTTCGTCTTGGGGGACTTCAGCAATGCGG
AGACCCAGGCGGCTCTACGACAAGCCCTGGGACGCGACGTGGGAGGGGAC
GGAATGCAGTTGGAAGAAGGGATGTGGAAAGACGGAGGTGGAGAATGCGA
GGGCACAGCTGACGTGATTCTCTCTGACATGGCTCCGGACTTGTCGGGGG
ACAAATTTAGGGACCATCGGCGCACACTTGATCTAGCATACCAGGTGAGG
ACAGAGCTGGGGAGAAGTAGAACTCTCTCTTGTTTCCACGCTTCAGAATT
TTTTTGTGTAGGGAAGTATTTCTACGGCTATTTGTTGGCGGCGCGGCTCG
ACATCAGCGCGCTGACAGGATTCTTACTTGAGCGCTTTCCCTGTTCACTT
TAGGTGTTGGCTTTTGCGGACACGGTATTTGCCTTGCAGAAAGTACGCAA
GAACTCTGCCCTTACGAAAAAGCAACGCAGGAAAACAGTCTTATGTAAGC
TTTTCAAAGGGCGAGATGAGGAGGAACTCCTGAGGCACGCACGAAGTCGG
TACGAAGACGTCCGTATTTTGAAGCCGAAAGCATCCCGTGGCGAGAGCGG
GGAGCAATACATGCTAGCCCGAGGATTCAAAGGAGGGATTTGAGATGGCG
TGGATGCGCACCTCTCTCAATATGTAAACACTCTCTTAAGGAAAATGAAT
ACTCAGCAGCGATTTGTTGGGTTTTATCCAACCTTGCGCGGAGAAAAGTG
TAGGACTTCATTCCTAGAGTCTATGAGTATAAAGAGGTTTTTCAAGCTGT
TCTCCAGCTTCTTATCTTTTCTTTTCCTCTCTTGCGAACATGTGGCAATG
TCTGTCTAGTCATTTTAAGCTACGGTATGTCTAAACGTAGATATTACCAG
TGTGCTCACGCAGTTGCAGAAGTTTCTTCTTCGAATCCATCAGCTCAATA
CTGTAATTAAAAATGTTAAGCTGGCCCCCATCCCGTTCTAACAAACATTA
TCATGTCATTTGACTG
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Coding sequence (CDS) from alignment at CM002462.1:287712..289327-

>rna3873 ID=rna3873|Name=rna3873|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002462.1:287712..289327- (Nannochloropsis gaditana)
GTGTTGGCTTTTGCGGACACGGTATTTGCCTTGCAGAAAGTACGCAAGAA
CTCTGCCCTTACGAAAAAGCAACGCAGGAAAACAGTCTTATGTAAGCTTT
TCAAAGGGCGAGATGAGGAGGAACTCCTGAGGCACGCACGAAGTCGGTAC
GAAGACGTCCGTATTTTGAAGCCGAAAGCATCCCGTGGCGAGAGCGGGGA
GCAATACATGCTAGCCCGAGGATTCAAAGGAGGGATTTGAATGGGATGGA
ACCCATGTGTCCATCGATGTTCAGACCTTTTCCTTCCTGCTTCACCCGTT
TCTCTTGAAATTTGCTCACCTTCATCACCCAACATGGTTGTGTGTAGTGT
AATTGACCTCGGCTGCGCCCCTGGAGGCTGGAGTCAGGTCGTAATGCAAG
CCATCCACCCGCCCTCTGCGTCCTCTTCCCTTTCCGGCACCAGCGATAAC
CATGTAAGAGCAGCAAATAACACTCCGCGCTCCCTTTTTCCTCCTGCCTC
AGGAGAGGGTCGGGTTATAGGGATCGATTTGCGGCCGATGGCACCGGTGC
CGGGCGTTTCGTTCGTCTTGGGGGACTTCAGCAATGCGGAGACCCAGGCG
GCTCTACGACAAGCCCTGGGACGCGACGTGGGAGGGGACGGAATGCAGTT
GGAAGAAGGGATGTGGAAAGACGGAGGTGGAGAATGCGAGGGCACAGCTG
ACGTGATTCTCTCTGACATGGCTCCGGACTTGTCGGGGGACAAATTTAGG
GACCATCGGCGCACACTTGATCTAGCATACCAGGTGTTGGCTTTTGCGGA
CACGGTATTTGCCTTGCAGAAAGTACGCAAGAACTCTGCCCTTACGAAAA
AGCAACGCAGGAAAACAGTCTTATGTAAGCTTTTCAAAGGGCGAGATGAG
GAGGAACTCCTGAGGCACGCACGAAGTCGGTACGAAGACGTCCGTATTTT
GAAGCCGAAAGCATCCCGTGGCGAGAGCGGGGAGCAATACATGCTAGCCC
GAGGATTCAAAGGAGGGATTTGAATGGGATGGAACCCATGTGTCCATCGA
TGTTCAGACCTTTTCCTTCCTGCTTCACCCGTTTCTCTTGAAATTTGCTC
ACCTTCATCACCCAACATGGTTGTGTGTAGTGTAATTGACCTCGGCTGCG
CCCCTGGAGGCTGGAGTCAGGTCGTAATGCAAGCCATCCACCCGCCCTCT
GCGTCCTCTTCCCTTTCCGGCACCAGCGATAACCATGTAAGAGCAGCAAA
TAACACTCCGCGCTCCCTTTTTCCTCCTGCCTCAGGAGAGGGTCGGGTTA
TAGGGATCGATTTGCGGCCGATGGCACCGGTGCCGGGCGTTTCGTTCGTC
TTGGGGGACTTCAGCAATGCGGAGACCCAGGCGGCTCTACGACAAGCCCT
GGGACGCGACGTGGGAGGGGACGGAATGCAGTTGGAAGAAGGGATGTGGA
AAGACGGAGGTGGAGAATGCGAGGGCACAGCTGACGTGATTCTCTCTGAC
ATGGCTCCGGACTTGTCGGGGGACAAATTTAGGGACCATCGGCGCACACT
TGATCTAGCATACCAG
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Synonyms
Publications