EWM26819.1, cds3864 (CDS) Nannochloropsis gaditana

Overview
NameEWM26819.1
Unique Namecds3864
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:288484..289026 -
Alignment locationCM002462.1:288085..288324 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26819.1
Productribosomal RNA large subunit methyltransferase
Orig transcript idgnl|cribi|Naga_100018g32.2799.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:288484..289026 -
CM002462.1supercontigCM002462.1:288085..288324 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001510RNA methylation
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR015507rRNA-MeTfrase_E
IPR029063SAM-dependent_MTases
IPR002877rRNA_MeTrfase_FtsJ_dom
Homology
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|585108910|gb|EWM26819.1| (ribosomal RNA large subunit methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 260
            MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI
Sbjct:    1 MGWNPCVHRCSDLFLPASPVSLEICSPSSPNMVVCSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 260          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|585108909|gb|EWM26818.1| (ribosomal RNA large subunit methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 457.218 bits (1175), Expect = 1.008e-160
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:   37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 260
            VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI
Sbjct:   88 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGGI 311          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|750962562|gb|KIK19460.1| (hypothetical protein PISMIDRAFT_683110 [Pisolithus microcarpus 441])

HSP 1 Score: 108.227 bits (269), Expect = 1.909e-24
Identity = 77/234 (32.91%), Postives = 111/234 (47.44%), Query Frame = 0
Query:   34 VCSVIDLGCAPGGWSQVVMQA---IHPPSASSSLSGTSDNHVRAANNTPR-SLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYED-----VRILKPKASRGESGEQYMLARGFKG 258
            +C+V+DLG APGGWSQVV +    I+P  +   +    +  +       +   +   +G G V+ +DL P+AP+PGV  +  DF + +   A++ AL       GM                 AD+ILSDMA + SG++ RD   +LD+ + V  FA     +         T K+R  T+L K F    E  L +  R  Y D     V  +KP ASR  S E Y L RG+KG
Sbjct:   64 ICAVVDLGAAPGGWSQVVAEKLGWINPALSDEDMDIAPNFGLNERARIDKFGSWSSTAGRGVVVAVDLLPIAPIPGVHTLQMDFLSPQAAGAVKTALSTPENPSGM-----------------ADIILSDMAANFSGNRVRDVESSLDICHSVFQFAKDNLHVAAANHR---TDKRRGGTLLLKHF----EHPLSKGFREEYLDPNFNSVNYIKPSASRAGSAEGYWLCRGWKG 273          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|751681038|gb|KIM31195.1| (hypothetical protein M408DRAFT_255489 [Serendipita vermifera MAFF 305830])

HSP 1 Score: 108.227 bits (269), Expect = 2.483e-24
Identity = 83/230 (36.09%), Postives = 120/230 (52.17%), Query Frame = 0
Query:   35 CSVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEG-MWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNS-----ALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
            C V+DLGCAPGGW+Q          AS  L G S N++   ++       P     +V+G+DL P  PV G  F+ G+F + E Q  LR+ +   +G D M+ + G + ++  G   G AD+I+SDMAP+LSG++  D    L+L   VLAFA T   L++V  NS     +L  K      L +      E+EL   A    + ++  KP+ASR  S E Y + +GFKG
Sbjct:   95 CIVVDLGCAPGGWTQ----------ASLELLGFSRNNMSEESDEDEQSHLP-----QVVGVDLLPTEPVLGARFLQGNFLDEEVQRELRRVI---LGYDQMEEQPGTIRQEPQG---GVADIIISDMAPNLSGNRVADIEAGLELCRSVLAFAKT--NLRQVGANSKGFGGSLVIKHFAAPELTRF----REQEL---APLFSQKIKYTKPEASRSRSSEAYFVCQGFKG 294          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|940339600|ref|WP_054964713.1| (RlmE family RNA methyltransferase [Thiohalorhabdus denitrificans] >gi|939542937|gb|KPV41647.1| 23S rRNA methyltransferase [Thiohalorhabdus denitrificans])

HSP 1 Score: 105.531 bits (262), Expect = 3.118e-24
Identity = 78/222 (35.14%), Postives = 101/222 (45.50%), Query Frame = 0
Query:   37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
            V+DLG APGGW+QV ++ +          G S                     GRV+GIDL PM PV G + +  DF+  E   ALR    R++ G                  G  D +LSDMAP+LSG K  D  R ++L    L  A  V               +   T++ K F+G   EELLR  R+ +  V   KP ASRGES EQY++ARGF G
Sbjct:   50 VVDLGAAPGGWTQVAVERV----------GAS---------------------GRVVGIDLLPMDPVSGSTLLEADFAADEGLEALR----REIDG------------------GEVDAVLSDMAPELSGIKVADQARAMELCELALELAREVL--------------RPGGTLVMKAFQGEGFEELLRALRAEFRSVAARKPDASRGESSEQYLVARGFLG 204          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|1081443753|emb|SCY56540.1| (23S rRNA (uridine2552-2'-O)-methyltransferase [Thiohalorhabdus denitrificans])

HSP 1 Score: 105.531 bits (262), Expect = 3.208e-24
Identity = 78/222 (35.14%), Postives = 101/222 (45.50%), Query Frame = 0
Query:   37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
            V+DLG APGGW+QV ++ +          G S                     GRV+GIDL PM PV G + +  DF+  E   ALR    R++ G                  G  D +LSDMAP+LSG K  D  R ++L    L  A  V               +   T++ K F+G   EELLR  R+ +  V   KP ASRGES EQY++ARGF G
Sbjct:   49 VVDLGAAPGGWTQVAVERV----------GAS---------------------GRVVGIDLLPMDPVSGSTLLEADFAADEGLEALR----REIDG------------------GEVDAVLSDMAPELSGIKVADQARAMELCELALELAREVL--------------RPGGTLVMKAFQGEGFEELLRALRAEFRSVAARKPDASRGESSEQYLVARGFLG 203          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|653050913|ref|WP_027302481.1| (RlmE family RNA methyltransferase [Rhodospirillales bacterium URHD0088])

HSP 1 Score: 105.531 bits (262), Expect = 7.929e-24
Identity = 75/222 (33.78%), Postives = 96/222 (43.24%), Query Frame = 0
Query:   37 VIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
            V+DLGCAPGGW+QV  + + P S +                          G+G VIGID+ PM PVPG   +  DF +      L+  L                        G ADV+LSDMA   +G    DH R + LA     FA  V A                 T LCK+F+G  E ELL   +  ++ VR  KP ASR ES E Y++A GF+G
Sbjct:   84 VVDLGCAPGGWTQVAAERVKPASTA--------------------------GQGAVIGIDILPMDPVPGAMVIELDFLDPSAPDRLKALL-----------------------NGPADVVLSDMAAPTTGHASTDHIRIIALAEAAYEFAHEVLAPGG--------------TFLCKVFQGGAEGELLAALKRDFKTVRHAKPPASRAESAEVYVVATGFRG 242          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|1067081634|ref|XP_018024597.1| (PREDICTED: rRNA methyltransferase 2, mitochondrial-like [Hyalella azteca])

HSP 1 Score: 105.916 bits (263), Expect = 2.329e-23
Identity = 68/224 (30.36%), Postives = 104/224 (46.43%), Query Frame = 0
Query:   36 SVIDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKGG 259
            +V++ G +PG W+QV +Q  +P  + +                    +  +S  G V+ +DL+P++PVPG +FV GDF++ +TQ  + Q L + V                       DV+LSDMAP  +G K  DH R + LA     FA        VR  +           LCK++ G + ++ LR     YED R++KP +SR  S E ++ ARG K  
Sbjct:  133 TVLECGASPGAWTQVAVQHCNPEDSPT--------------------YKSSSPTGCVVAVDLQPVSPVPGATFVCGDFTSPDTQQRVLQLLPKGV-----------------------DVVLSDMAPSATGIKEHDHTRIMRLAVCAAHFA--------VRHATP------HSCFLCKVWAGGEVDKFLRQLSLLYEDARLVKPPSSRSNSAELFVYARGLKSS 299          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|751715435|gb|KIM64446.1| (hypothetical protein SCLCIDRAFT_15229 [Scleroderma citrinum Foug A])

HSP 1 Score: 104.76 bits (260), Expect = 3.558e-23
Identity = 80/238 (33.61%), Postives = 116/238 (48.74%), Query Frame = 0
Query:   31 NMVVCSVIDLGCAPGGWSQVVMQA---IHPPSASSSLS------GTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEEL-LRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 258
            N  V +V+DLG APGGWSQVV +    + P +  +S +      G SD     A       +    G G ++ +DL P+AP+PGV  +  DF +     A++ AL       GM                 ADVILSDMA + +G+K  D   +LD+ + V  FA     +++V +   LTK  R  T+L K F     +E  +++ +  +  V  +KP ASR ES E Y L RG+KG
Sbjct:   61 NSDVRAVVDLGAAPGGWSQVVAEKLGWVTPCTPENSYADLMPDFGLSD----LARIEKFGSWSSNVGRGVIVAVDLLPIAPIPGVHTLQMDFLSPRAADAIKAALTTPENPSGM-----------------ADVILSDMAANFTGNKAHDVEMSLDICHSVFEFAINNLNVREVHEG-VLTK--RGGTLLLKHFDHPLSQEFRVKYLKPNFLSVNYIKPSASRAESAEGYWLCRGWKG 274          
BLAST of EWM26819.1 vs. NCBI_GenBank
Match: gi|595486354|gb|EXX72537.1| (Mrm2p [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 103.605 bits (257), Expect = 4.045e-23
Identity = 66/220 (30.00%), Postives = 102/220 (46.36%), Query Frame = 0
Query:   38 IDLGCAPGGWSQVVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFK 257
            ID G APGGWSQVV + + P   +++     D   +   N              +I +DL  + P+PGV+ + GDF++  TQ  +++ L                       E  ADVILSDMAP+ SG +F DH ++++L    L FA+ V               +   T LCK   G  + E   + +++++ VR  KP+A R +S E Y +  G+K
Sbjct:   64 IDCGAAPGGWSQVVSRKVLPEFDTTT-EEIKDFETKLNGNL-------------IIAVDLLTIEPIPGVNVIQGDFTHISTQQKVKELLK----------------------EREADVILSDMAPNFSGQRFIDHVKSMELCEFSLNFAERVL--------------KSGGTFLCKFLMGESDHEFRNNLKTKFDIVRHEKPQAVRKKSTEGYFMCLGYK 233          
The following BLAST results are available for this feature:
BLAST of EWM26819.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108910|gb|EWM26819.1|0.000e+0100.00ribosomal RNA large subunit methyltransferase [Nan... [more]
gi|585108909|gb|EWM26818.1|1.008e-160100.00ribosomal RNA large subunit methyltransferase [Nan... [more]
gi|750962562|gb|KIK19460.1|1.909e-2432.91hypothetical protein PISMIDRAFT_683110 [Pisolithus... [more]
gi|751681038|gb|KIM31195.1|2.483e-2436.09hypothetical protein M408DRAFT_255489 [Serendipita... [more]
gi|940339600|ref|WP_054964713.1|3.118e-2435.14RlmE family RNA methyltransferase [Thiohalorhabdus... [more]
gi|1081443753|emb|SCY56540.1|3.208e-2435.1423S rRNA (uridine2552-2'-O)-methyltransferase [Thi... [more]
gi|653050913|ref|WP_027302481.1|7.929e-2433.78RlmE family RNA methyltransferase [Rhodospirillale... [more]
gi|1067081634|ref|XP_018024597.1|2.329e-2330.36PREDICTED: rRNA methyltransferase 2, mitochondrial... [more]
gi|751715435|gb|KIM64446.1|3.558e-2333.61hypothetical protein SCLCIDRAFT_15229 [Scleroderma... [more]
gi|595486354|gb|EXX72537.1|4.045e-2330.00Mrm2p [Rhizophagus irregularis DAOM 197198w][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3873rna3873Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications