rna3862, rna3862 (mRNA) Nannochloropsis gaditana

Overview
Namerna3862
Unique Namerna3862
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1792
Alignment locationCM002462.1:270444..270741 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g44.2791.mrna
Orig protein idgnl|cribi|Naga_100018g44.2791
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:270444..270741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g44gene3716Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3862rna3862-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26811.1cds3853Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3862 ID=rna3862|Name=rna3862|organism=Nannochloropsis gaditana|type=mRNA|length=1792bp
GGCACAATTTAGAGCAAGCTCGAGGAACACCCCAGCGTGATGGGCCGGTC
GTCACGGCTGTGCTATTTCTAGACAGCTTGCGTGGAGGGTTGAAAAACGC
GAAGCTTCTCAGGCAGTAACCGCAACGAGCGAAAGTCTTGAGGATTCCTC
CCGTCGATATCCTGCAAGACTGTCCAAGCCCCGGGCCTTTGTGGGGTGGT
CAGTGTGCTCGCTTTGGTCCCTGTAAACAATCCTTTTCGTTACGCAAGGG
GGGCTGGCCCAGCTGGCTGTTGGTGTTGGCTCCATTTATCCTTGTAAGTC
GACGGACGGTAAGCAAGGATCCCTGGAATGATCGCGAGGTCAACTTGGAT
TTCTACTCCCACGCTTTTTGCCCAACGGCACTCTTGCTCACAATGAAGCA
TGCGCATGCCTGTGTGAAGTATTCAGACCTTCTCCCGCTTGTTATATTGT
TGCACGGTGTCCTCTGTATGAATATTTGTAAGGATGGTAAATCTAGCGCA
TGTTGAGCAGCGCTCGCTCTTGCCACCATCTTACCCTCGTTCCCCTCCTC
TTCGACTTTACACACGTCGTACCATCTCACATTCTCTCAACACAACATCT
TCCTCCACCAGCTTTTTTTTTTCCTGCGCGTTCAAGAATGAGGGTCATTG
CTCTTCTCTCTCTCGCCTCGATGGCAAGTGCCTTCATCGCCCCTACACCC
TTGGCCCGTCGTGCCACCGGCGCGGTGCGCATGGCCGCGGATGACGACCT
GTCTACTGCGCTTCCTTTCGACAAGCGACCGCCCAACCTGGACGGCAGCC
TTCCTGGGGATGTGGGTTTTGACCCGGTCGGCTTCTCGAACAACCCTCCC
CGTCCTTGGCTGATCGGAGGCTCGGGCCGCTCCCTGAAGTGGTACCGTGA
AGCAGAGATTGTTCACGGCCGAGTCGCCATGCTTGCCGCCCTCGGATGGG
TGTTCCCCAACATCTATCACCTTCCGGGGAACGAGGACGTTGGTGTGGAT
GCGTTTGCGAACCTGAACCCTTTCGGGGCTTTGACCACCGTCCCGGCCGC
GGGCCTCTGGCAGATCGCCGCCACGGTGGGCGCGATTGAGCTTTTCCGCG
TGAACCGTGTCATCCGTGGAGACAAGGAGGCGGGTGATCTCGGACTCGGC
CAGGGAGAGGGGCGATGGAACCCCTTCGGATTCAACTACTCCGAGGAGGA
GTATGCCGAGAAGCAGTTGCAGGAGATCAAGAACGGACGTCTGGCGATGG
TGGGCATCTTGGGTCTTCTTTTGCAGGCCAGTGTGACTGGGAAGGGTATT
GTGCAGCAGCTGGGGGGCTCTTTCGACGTGCCTGAAGCTGTCTCCAAGGC
TGGCTACTACTTCCCTGACGGCGTCTAAATGCCTTTCCTCGCGAAAAGTA
GGACAAAGAGAGGTTTATTTGGTCGTTGGCACGTGTCCACACACCCCCAC
AGACAAGCCTTGCCCACTCTTAATGTATTTAAAACGAAAACGATAGGAGA
GGAAGGGCCTGAGTCCCAGGGCGTGCGGCGGGTGCCTCGGCTACCGATAC
CTGTCTCTTATTATGCTGGCTTTACACAGATGATACGTAGGTTAAGAATT
TTATGTTCCAGGGATAGCACGGCCTCAGCCTGGTGGAAAGAGAAGAGCTG
ATGAAGTGTAGAACATTCTTAGCCCGGGACTCAAACGTGAAAAGAAAGTT
ACGGGTCAAGGGGGGGGGAAGCGCTTTTCTGATAGTCCGTTCAAGCCAGA
TGAAAGAACCACACAATGTTGGAACTCTTGTTTAATGAATTT
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protein sequence of rna3862

>rna3862-protein ID=rna3862-protein|Name=rna3862|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MVTQGRDLNWKYPLTDLHIFRCCMSVFQSAISCHSSSPLFVAYISDSQGI
SRLAVVLLYKKAGQHTFRNEERYGN
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mRNA from alignment at CM002462.1:270444..270741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3862 ID=rna3862|Name=rna3862|organism=Nannochloropsis gaditana|type=mRNA|length=298bp|location=Sequence derived from alignment at CM002462.1:270444..270741- (Nannochloropsis gaditana)
ATGGTCACACAAGGCAGAGGTTTCTTCCGCAACCTCCCGCATTCCTCGCT
TCCGAGCCTTTTTTTTTTTAACATTTGCTACCGTCTTAGACTTGAACTGG
AAATACCCGCTCACAGACCTGCACATTTTCAGATGCTGCATGAGCGTGTT
TCAAAGTGCCATATCATGCCACAGCTCGTCTCCACTCTTTGTGGCCTACA
TATCGGATTCCCAGGGCATCTCCCGTCTTGCAGTTGTCCTCCTGTACAAA
AAAGCTGGGCAACACACATTTCGAAACGAAGAGCGATACGGCAATTAA
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Coding sequence (CDS) from alignment at CM002462.1:270444..270741-

>rna3862 ID=rna3862|Name=rna3862|organism=Nannochloropsis gaditana|type=CDS|length=456bp|location=Sequence derived from alignment at CM002462.1:270444..270741- (Nannochloropsis gaditana)
ACTTGAACTGGAAATACCCGCTCACAGACCTGCACATTTTCAGATGCTGC
ATGAGCGTGTTTCAAAGTGCCATATCATGCCACAGCTCGTCTCCACTCTT
TGTGGCCTACATATCGGATTCCCAGGGCATCTCCCGTCTTGCAGTTGTCC
TCCTGTACAAAAAAGCTGGGCAACACACATTTCGAAACGAAGAGCGATAC
GGCAATTAAATGGTCACACAAGGCAGAGACTTGAACTGGAAATACCCGCT
CACAGACCTGCACATTTTCAGATGCTGCATGAGCGTGTTTCAAAGTGCCA
TATCATGCCACAGCTCGTCTCCACTCTTTGTGGCCTACATATCGGATTCC
CAGGGCATCTCCCGTCTTGCAGTTGTCCTCCTGTACAAAAAAGCTGGGCA
ACACACATTTCGAAACGAAGAGCGATACGGCAATTAAATGGTCACACAAG
GCAGAG
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Synonyms
Publications