EWM26813.1, cds3852 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26813.1
Unique Name	cds3852
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:269152..270030 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26813.1
Product	light-harvesting protein
Orig transcript id	gnl\|cribi\|Naga_100018g45.2793.mrna
Gene	LHCP31
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:269152..270030 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009579	thylakoid
GO:0009507	chloroplast
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0006464	cellular protein modification process
GO:0006091	generation of precursor metabolites and energy
GO:0009765	photosynthesis, light harvesting

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom
IPR022796	Chloroa_b-bind

Homology

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|585108904|gb|EWM26813.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0

Query:    1 MLSSARSCHHLTLVPLLFDFTHVVPSHILSTQHLPPPAFFFPARSRMRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            MLSSARSCHHLTLVPLLFDFTHVVPSHILSTQHLPPPAFFFPARSRMRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV
Sbjct:    1 MLSSARSCHHLTLVPLLFDFTHVVPSHILSTQHLPPPAFFFPARSRMRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|553185647|ref|XP_005854284.1| (light-harvesting protein [Nannochloropsis gaditana CCMP526] >gi|422294775|gb|EKU22075.1| light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 494.967 bits (1273), Expect = 3.759e-176
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0

Query:   47 MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV
Sbjct:    1 MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 246

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|873236883|emb|CEL98288.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 306.22 bits (783), Expect = 1.919e-101
Identity = 147/213 (69.01%), Postives = 170/213 (79.81%), Query Frame = 0

Query:   80 ADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
             + D S ALP DKRPPNLDGSLPGD GFDPVGFSNN PR WLIGG  RSLKWYREAE+VH RVAMLAALGW+FP I+HLPGN  VGVDAFA  NP+ ALTTVP  GLWQIA TV AIE FR+ RV+RG+KEAGDLGLGQGEGRWNPFGF + E+EY   Q++EIKNGRLAM+ I+G++LQA+VTG+G+++Q+G  F +       GY  P G 
Sbjct:   43 GESDRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIGGDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGFGL-----GPGYRLPAGT 250

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|298709999|emb|CBJ31718.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 264.618 bits (675), Expect = 3.947e-85
Identity = 140/250 (56.00%), Postives = 172/250 (68.80%), Query Frame = 0

Query:   49 VIALLSLASMA--SAFI--APTPLA--RRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKE-AGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYF 288
            V A  SL ++A  SAF+  A  PLA  R A   + MAA  + S ++P D  P  LDG + GDVGFDP GF+NNPP  W+ G   G+   +KWYREAE+ HGRVAMLAA GW+FP IYH PGN  +G D FA +NP  A   +P AG  QI  T+  +E  R+NR IR D   AGD+GLGQGEGRWNPF FNY+EEEYAEKQLQEIK+GR AM+GI G+  Q  V G+GI+ QLG +F  P++V+KAGY+F
Sbjct:    5 VAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 253

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|676382233|ref|XP_009034395.1| (hypothetical protein AURANDRAFT_71070 [Aureococcus anophagefferens] >gi|323454939|gb|EGB10808.1| hypothetical protein AURANDRAFT_71070 [Aureococcus anophagefferens])

HSP 1 Score: 234.187 bits (596), Expect = 3.119e-73
Identity = 121/209 (57.89%), Postives = 152/209 (72.73%), Query Frame = 0

Query:   85 STALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGR-SLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            S ALP+ +   NLDGSL GDVGFDP+GFS   P  W  G  G  SLK +REAE++HGR+A LA LGW+FP +YH PG +D    AFA +NP+ A+  +P+AG  QI A + ++E+ RVNR+       GDLGLGQGEGRWNPFGF+Y+ EEY +KQLQEIK+ RLAM+GI GL  ++S T  G++QQLG SF  PE VSKAG+YFP+GV
Sbjct:   42 SIALPWTET--NLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGSLKIFREAELMHGRIAQLACLGWIFPELYHFPGKDD----AFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYFPEGV 244

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|223995387|ref|XP_002287377.1| (fucoxanthin chl a/c protein, lhca clade [Thalassiosira pseudonana CCMP1335] >gi|220976493|gb|EED94820.1| fucoxanthin chl a/c protein, lhca clade [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 198.364 bits (503), Expect = 3.307e-59
Identity = 115/257 (44.75%), Postives = 159/257 (61.87%), Query Frame = 0

Query:   47 MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFS-------NNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIY-HLPGNEDVG-VDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIR--GDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            M  +A LSL + ASAF AP    +++T    + + ++   ALPF   PP LDGSL GDVGFDP+GFS       NNP   +  G     ++W REAE+ HGR+A LA +G+++P ++   PGNE+ G  DA++ +NP  A+  +P+  ++QI   +  +E  RV R+     D+ +GD+GL    G WNPF  NYS EEYAEKQLQEIK+ RLAM+G  GL  QA  +G+ IV QL  +F  PE  +KAGY+ P G+
Sbjct:    1 MYKLACLSLIASASAF-APAQTGKQST---SLNSWNEAPRALPFGSAPPTLDGSLVGDVGFDPIGFSTAPFASFNNPI--YQEGNFMTDVQWLREAELTHGRIAQLAVVGFIWPALFGTFPGNENFGGADAYSYVNPLEAINHIPSLAIYQIVGGMAWVEYQRVQRIKEQGKDRISGDIGLAY-PGGWNPFNINYSPEEYAEKQLQEIKHCRLAMLGAFGLFFQALNSGEDIVSQLSPAFAAPEYAAKAGYFLPQGI 250

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|1072224382|gb|OEU09133.1| (fucoxanthin chl a/c protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 192.586 bits (488), Expect = 7.395e-57
Identity = 108/222 (48.65%), Postives = 141/222 (63.51%), Query Frame = 0

Query:   82 DDLSTALPFDKR--PPNLDGSLPGDVGFDPVGFSNNPPRPWLI-----GGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIY-HLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRG--DKEAGDLGLGQG-EGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            D  S ALPF +   P  LDGSLPGDVGFDPVGFS  P + W       G S   +KW REAE+ HGR+A LA +G+++P++    PGN+  GVDA++  NP   ++ VP   + QI   +  IE  RV  + R   D+  GDLGLGQG   R NPF  +YS EE+ EKQ+QEIK+ RLAM+G  GL  QA+ +G  I  Q+GG+   PEAV+KAGY+ P+G+
Sbjct:   34 DRPSAALPFAENGCPATLDGSLPGDVGFDPVGFSTTPIQSWFDSKTAPGNSMSDVKWLREAEVTHGRIAQLAVVGFIYPSVAGTFPGNDWTGVDAYSYKNPIEEISHVPGEAVAQIIFAMSLIEFRRVILISREGPDRLPGDLGLGQGPNERINPFNLDYSPEEFYEKQVQEIKHCRLAMLGAFGLFCQAANSGVDIGTQIGGALVRPEAVAKAGYFLPEGI 255

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|397569437|gb|EJK46744.1| (hypothetical protein THAOC_34573 [Thalassiosira oceanica])

HSP 1 Score: 185.267 bits (469), Expect = 4.059e-54
Identity = 101/219 (46.12%), Postives = 140/219 (63.93%), Query Frame = 0

Query:   85 STALPFDKRPPNLDGSLPGDVGFDPVGFSNNP----PRPWLIGGSGRS-LKWYREAEIVHGRVAMLAALGWVFPNIY-HLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIR-----GDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            + ALPF   P  LDGSLPGDVGFDP+GFS  P      P  + G+  S L+W REAE+ HGR+A LA +G+++P ++  LPG E  G   F+ LNPF AL+TVP + ++QI   +G    F   RV+R      ++  GD+G+G   G +NP   NY+ EE+AEKQLQEIK+ RLAM+   GL+ QA+ +G  ++ QL  +F+ PE  +KAGY+ P G+
Sbjct:   36 TKALPFGSSPDTLDGSLPGDVGFDPIGFSTQPFASFNNPLYVEGNFMSDLEWLREAELAHGRIAQLAVVGFLWPGLFGTLPGAE--GYADFSELNPFKALSTVPESAIYQI---IGGCAWFEYQRVVRIKEQGANRVVGDIGIGY-PGAFNPLNLNYTPEEFAEKQLQEIKHCRLAMIAAFGLICQANNSGTDVISQLAPAFEAPEYAAKAGYFLPQGI 248

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|1210522849|dbj|GAX18319.1| (light-harvesting complex II chlorophyll a/b binding protein 4 [Fistulifera solaris])

HSP 1 Score: 182.956 bits (463), Expect = 4.771e-52
Identity = 103/219 (47.03%), Postives = 135/219 (61.64%), Query Frame = 0

Query:   85 STALPFDKRPPNLDGSLPGDVGFDPVGFSNN-----PPRPWLIGGSGR--SLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLG----LGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            STA+P +  P  LDGSLPGDVGFDP   S       P    L  G      L WYREAE++HGR+ M+A LG++ P      GNE  GVDA++  NP  A++  P A L+QI A +  +E FR  R+I  +      G     GQ EG WNPF FNY+ EEYAEKQLQE+K+ RLAM+G+LGL+ QA+ +G  +V QL  +F  P+  +KAGY+ P+G+
Sbjct:  128 STAIPGESAPALLDGSLPGDVGFDPCFLSTKADLMAPYFNNLFAGQANIDGLTWYREAELMHGRICMIAVLGFIAPGFGTFGGNEWTGVDAYSETNPLAAISAAPGAALFQIFAFMSILE-FRRIRIIFAEGSNYVAGASQKWGQTEGSWNPFNFNYTPEEYAEKQLQEVKHARLAMIGLLGLIFQANASGVSVVDQLSAAFVTPDYYAKAGYFLPEGI 345

[Close]

BLAST of EWM26813.1 vs. NCBI_GenBank
Match: gi|1210524569|dbj|GAX16656.1| (light-harvesting complex II chlorophyll a/b binding protein 4 [Fistulifera solaris])

HSP 1 Score: 182.956 bits (463), Expect = 6.832e-52
Identity = 103/219 (47.03%), Postives = 135/219 (61.64%), Query Frame = 0

Query:   85 STALPFDKRPPNLDGSLPGDVGFDPVGFSNN-----PPRPWLIGGSGR--SLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLG----LGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
            STA+P +  P  LDGSLPGDVGFDP   S       P    L  G      L WYREAE++HGR+ M+A LG++ P      GNE  GVDA++  NP  A++  P A L+QI A +  +E FR  R+I  +      G     GQ EG WNPF FNY+ EEYAEKQLQE+K+ RLAM+G+LGL+ QA+ +G  +V QL  +F  P+  +KAGY+ P+G+
Sbjct:  142 STAIPGESAPALLDGSLPGDVGFDPCFLSTKADLMAPYFNNLFAGQANIDGLTWYREAELMHGRICMIAVLGFIAPGFGTFGGNEWTGVDAYSETNPLAAISAAPGAALFQIFAFMSILE-FRRIRIIFAEGSNYVAGASQKWGQTEGSWNPFNFNYTPEEYAEKQLQEVKHARLAMIGLLGLIFQANASGVSVVDQLSAAFVTPDYYAKAGYFLPEGI 359

The following BLAST results are available for this feature:

BLAST of EWM26813.1 vs. NCBI_GenBank

BLAST of EWM26813.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585108904\|gb\|EWM26813.1\|	0.000e+0	100.00	light-harvesting protein [Nannochloropsis gaditana...	[more]
gi\|553185647\|ref\|XP_005854284.1\|	3.759e-176	100.00	light-harvesting protein [Nannochloropsis gaditana...	[more]
gi\|873236883\|emb\|CEL98288.1\|	1.919e-101	69.01	unnamed protein product [Vitrella brassicaformis C...	[more]
gi\|298709999\|emb\|CBJ31718.1\|	3.947e-85	56.00	Light harvesting complex protein [Ectocarpus silic...	[more]
gi\|676382233\|ref\|XP_009034395.1\|	3.119e-73	57.89	hypothetical protein AURANDRAFT_71070 [Aureococcus...	[more]
gi\|223995387\|ref\|XP_002287377.1\|	3.307e-59	44.75	fucoxanthin chl a/c protein, lhca clade [Thalassio...	[more]
gi\|1072224382\|gb\|OEU09133.1\|	7.395e-57	48.65	fucoxanthin chl a/c protein [Fragilariopsis cylind...	[more]
gi\|397569437\|gb\|EJK46744.1\|	4.059e-54	46.12	hypothetical protein THAOC_34573 [Thalassiosira oc...	[more]
gi\|1210522849\|dbj\|GAX18319.1\|	4.771e-52	47.03	light-harvesting complex II chlorophyll a/b bindin...	[more]
gi\|1210524569\|dbj\|GAX16656.1\|	6.832e-52	47.03	light-harvesting complex II chlorophyll a/b bindin...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3861	rna3861	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications