|
|
Properties
| Property Name | Value |
|---|
| Product | light-harvesting protein |
| Orig transcript id | gnl|cribi|Naga_100018g45.2793.mrna |
| Orig protein id | gnl|cribi|Naga_100018g45.2793 |
| Gene | LHCP31 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:268653..270444 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3861 ID=rna3861|Name=rna3861|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp
ATGCTTCGCGGACATCAAACGGAATGTTTTCATCTACTGGTTCGCCTTTC
CCACGGTGGTCAGTGCCCCGCCCTTCCGGCACTTGAAGGCGCCCGCCCCT
TTGGCAGAGGCTGGGCAAGGGGAAGGAAACCCATTTTTTTCAGGGACCGA
GTGCTCTCTTCTGTACCAGGGCTTGCTGGCGTACCGTCAACGTCGCTTCC
AGGAGACGGGCGACGCGTCCTGTCCTCCCTTCTTCCTCATCCTCCGTTCC
ACGACCCCCCCCCCCAAACCGCGGACGACCGGGAGGGGGGATCCTCCTCC
CTCTCCCTGGAGGTCTGCCCTTTGGATGCCTACGAGAAGATGGATCGCTC
CCATGGAGAGCAACCACAGGTGATGTTTGGATACGTAGACCCCGGAACGG
TGCCGGATGCGCCGGGGTGGCCCCTGCGAAATTTCTTGCTGCTCCTTGCG
AACCGGTGGGGGCTCTGCGAGGCAACCGTCGTCTGCTACCGCGGTCGGGT
CACGGGGCCTACGCATGATCCAGAAGCAGGTGGTAATGGAAGCCACTTGA
ATCCCCTGGGAGGGGCCCAGGTGATGCGGGGCAGCTTCGTGCTGCACGTC
TCCCTCGCGCCCCTGGCGTCCTCGCCTTCCTCTTCCCCCCCCGGCGCCCT
CACGACCACAGGCTGGGAGATGCACAAAGGCAAATACATGCCTCGACGCG
TCGACCTCTCTGCCACCATGGACCCTATCCGCCTGGCCGAGCAGTCCGTG
GATCTGAATCTGAAGCTCATGCGCTGGCGGCTGCTCCCAGCCCTGGACAT
CGCCGCCCTGGCCCGCACCAAATGCCTCTTGCTAGGCGCCGGGACCCTTG
GCTGCAGTGTGGCACGGGGCTTGCTTGGGTGGGGCGTGCGGACGATCACG
CTGGTGGACAACGGGCGGGTCGCGCTCTCGAACCCTGTCCGTCAATCCCT
CTTTGAGTACACGGACTGCGCGGACGGGGGAAAGCCCAAGGCCCTGGCGG
CGGCGGCGGCTTTGCGGAGGATTTTTCCCGGGGTGGTTGCGGAGGGACAT
GTCATGACCATCCCTATGCCGGGCCACCCAGTTTCCTCGCCGGCCGAAGA
GGCAAGCGCGCGGCGGGAGGTGGAGTTGTTGGACAAGCTGGTGGCGGAGC
ACGACGTGATCTTCCTGCTTACCGACACACGGGAGAGTCGATGGTTGCCG
ACCGTCCTGGGGGCCGTGCACGACAAGATCCTCGTGAATGCGGCCTTGGG
CTTTGACACCTTCATGGTGATGCGTCATGGTGCTCAACCGAATCCCCCCC
TGACCTCGGTCGCGCCATCCTGCAGCGGTGGGGAGGATGGGGGTACTGCG
GGGGAATCGAAAGCCAGGACGGGGAAGGGAAGCCCCGGCCCGGCGGATGG
AGACGGCATTGGCTGCTATTTCTGCAATGACGTGGTGGCTCCCGACGACT
CGACCAAAGACCGCACGCTCGATCAACAGTGCACGGTCACGCGGCCCGGC
CTGGCGCCTGTAGCCTCTGCGCTGGCGGTGGAACTCATGGTAGCGTTGCT
CCACCACCCCCTCAGGCATCGGGCACCCGCCGACGGGGGCGAGGCAAGCG
GTTTGGGGCATCGCTTTCTGGACGATCCGGACCGGCCGTTGGGAATTTTA
CCCCAGCAGATTCGTGGGTATTTGGCGCATTTCACAACGATTTTGCCAGT
GACGAGGGCGTTCCAGCATTGTACAGGCTGCGCTCCTGCTGTCATCGAAG
CCTACAAGAGGGAGGGGGCGGGGCTAGTGGTGCGTGTCTGCAACGAGCAG
GGGGTCTTGGAGGAAATGACGGGTTTGGCGCAGATGAGGAGGGAGACCGA
CGCGTTGGAACTTTCGTGGAGTGAGGATGAGGACGAGGAGGAAGAAGAGG
AGTTGGGAGGTGGTGGGAAGGAGAAGGAAGTGGAAATGGGGGAAAAGGAG
CAAAAGGGAAGGGAGAAGCCGACGCAAGAATGGGATGTGAAAGAGGAGGA
AAAGAAGAGTGGTGGTTTGGACTTGGCGCTTGAGGATTTGGCGATCGAGC
ATGCAGGAATAAGGAGAACAGGGGGCAATTGTGAGTGA back to topprotein sequence of rna3861 >rna3861-protein ID=rna3861-protein|Name=rna3861|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MLSSARSCHHLTLVPLLFDFTHVVPSHILSTQHLPPPAFFFPARSRMRVI
ALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGS
LPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGW
VFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFR
VNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAM
VGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV back to topmRNA from alignment at CM002462.1:268653..270444+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3861 ID=rna3861|Name=rna3861|organism=Nannochloropsis gaditana|type=mRNA|length=1792bp|location=Sequence derived from alignment at CM002462.1:268653..270444+ (Nannochloropsis gaditana)
GGCACAATTTAGAGCAAGCTCGAGGAACACCCCAGCGTGATGGGCCGGTC
GTCACGGCTGTGCTATTTCTAGACAGCTTGCGTGGAGGGTTGAAAAACGC
GAAGCTTCTCAGGCAGTAACCGCAACGAGCGAAAGTCTTGAGGATTCCTC
CCGTCGATATCCTGCAAGACTGTCCAAGCCCCGGGCCTTTGTGGGGTGGT
CAGTGTGCTCGCTTTGGTCCCTGTAAACAATCCTTTTCGTTACGCAAGGG
GGGCTGGCCCAGCTGGCTGTTGGTGTTGGCTCCATTTATCCTTGTAAGTC
GACGGACGGTAAGCAAGGATCCCTGGAATGATCGCGAGGTCAACTTGGAT
TTCTACTCCCACGCTTTTTGCCCAACGGCACTCTTGCTCACAATGAAGCA
TGCGCATGCCTGTGTGAAGTATTCAGACCTTCTCCCGCTTGTTATATTGT
TGCACGGTGTCCTCTGTATGAATATTTGTAAGGATGGTAAATCTAGCGCA
TGTTGAGCAGCGCTCGCTCTTGCCACCATCTTAccctcgttcccctcctc
ttcgacttTACACACGTCGTACCATCTCACATTCTCTCAACACaacatct
tcctccaccagcttttttttttcctgcgcGTTCAAGAATGAGGGTCATtg
ctcttctctctctcgcctcgATGGCAAGTGCCTTCATCGCCCCTACACCC
TTGGCCCGTCGTGCCACCGGCGCGGTGCGCATGGCCGCGGATGACGACCT
GTCTACTGCGCTTCCTTTCGACAAGCGACCGCCCAACCTGGACGGCAGCC
TTCCTGGGGATGTGGGTTTTGACCCGGTCGGCTTCTCGAACaaccctccc
cgtccttggCTGATCGGAGGCTCGGGCCGCTCCCTGAAGTGGTACCGTGA
AGCAGAGATTGTTCACGGCCGAGTCGCCATGCTTGCCGCCCTCGGATGGG
TGTTCCCCAACATCTATCACCTTCCGGGGAACGAGGACGTTGGTGTGGAT
GCGTTTGCGAACCTGAACCCTTTCGGGGCTTTGACCACCGTCCCGGCCGC
GGGCCTCTGGCAGATCGCCGCCACGGTGGGCGCGATTGAGCTTTTCCGCG
TGAACCGTGTCATCCGTGGAGACAAGGAGGCGGGTGATCTCGGActcggc
cagggagaggggcgatGGAACCCCTTCGGATTCAACTACTCCGAGGAGGA
GTATGCCGAGAAGCAGTTGCAGGAGATCAAGAACGGACGTCTGGCGATGG
TGGGCATCTTGGGTCTTCTTTTGCAGGCCAGTGTGACTGGGAAGGGTATT
GTGCAGCAGCTGGGGGGCTCTTTCGACGTGCCTGAAGCTGTCTCCAAGGC
TGGCTACTACTTCCCTGACGGCGTCTAAATGCCTTTCCTCGCGAAAAGTA
GGACAAAGAGAGGTTTATTTGGTCGTTGGCACGTGTCCACACACCCCCAC
AGACAAGCCTTGCCCACTCTTAATGTATTTAAAACGAAAACGataggaga
ggaagggcctgAGTCCCAGGGCGTGCGGCGGGTGCCTCGGCTACCGATAC
CTGTCTCTTATTATGCTGGCTTTACACAGATGATACGTAGGTTAAGAATT
TTATGTTCCAGGGATAGCACGGCCTCAGCCTggtggaaagagaagagcTG
ATGAAGTGTAGAACATTCTTAGCCCGGGACTCAAACGTGAAAAGAAAGTT
ACgggtcaagggggggggaagcgctTTTCTGATAGTCCGTTCAAGCCAGA
TGAAAGAACCACACAATGTTGGAACTCTTGTTTAATGAATTT back to topCoding sequence (CDS) from alignment at CM002462.1:268653..270444+ >rna3861 ID=rna3861|Name=rna3861|organism=Nannochloropsis gaditana|type=CDS|length=879bp|location=Sequence derived from alignment at CM002462.1:268653..270444+ (Nannochloropsis gaditana)
ATGTTGAGCAGCGCTCGCTCTTGCCACCATCTTAccctcgttcccctcct
cttcgacttTACACACGTCGTACCATCTCACATTCTCTCAACACaacatc
ttcctccaccagcttttttttttcctgcgcGTTCAAGAATGAGGGTCATt
gctcttctctctctcgcctcgATGGCAAGTGCCTTCATCGCCCCTACACC
CTTGGCCCGTCGTGCCACCGGCGCGGTGCGCATGGCCGCGGATGACGACC
TGTCTACTGCGCTTCCTTTCGACAAGCGACCGCCCAACCTGGACGGCAGC
CTTCCTGGGGATGTGGGTTTTGACCCGGTCGGCTTCTCGAACaaccctcc
ccgtccttggCTGATCGGAGGCTCGGGCCGCTCCCTGAAGTGGTACCGTG
AAGCAGAGATTGTTCACGGCCGAGTCGCCATGCTTGCCGCCCTCGGATGG
GTGTTCCCCAACATCTATCACCTTCCGGGGAACGAGGACGTTGGTGTGGA
TGCGTTTGCGAACCTGAACCCTTTCGGGGCTTTGACCACCGTCCCGGCCG
CGGGCCTCTGGCAGATCGCCGCCACGGTGGGCGCGATTGAGCTTTTCCGC
GTGAACCGTGTCATCCGTGGAGACAAGGAGGCGGGTGATCTCGGActcgg
ccagggagaggggcgatGGAACCCCTTCGGATTCAACTACTCCGAGGAGG
AGTATGCCGAGAAGCAGTTGCAGGAGATCAAGAACGGACGTCTGGCGATG
GTGGGCATCTTGGGTCTTCTTTTGCAGGCCAGTGTGACTGGGAAGGGTAT
TGTGCAGCAGCTGGGGGGCTCTTTCGACGTGCCTGAAGCTGTCTCCAAGG
CTGGCTACTACTTCCCTGACGGCGTCTAA back to top
|