rna3852, rna3852 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3852
Unique Name	rna3852
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	348
Alignment location	CM002462.1:224681..226287 -

Link to JBrowse

Properties


Property Name	Value
Product	glutamyl endopeptidase family protein
Orig transcript id	gnl\|cribi\|Naga_100018g57.2794.mrna
Orig protein id	gnl\|cribi\|Naga_100018g57.2794
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:224681..226287 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g57	gene3707	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3852	rna3852-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26814.1	cds3843	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:224681..226287-
coding sequence from alignment at CM002462.1:224681..226287-

mRNA sequence

>rna3852 ID=rna3852|Name=rna3852|organism=Nannochloropsis gaditana|type=mRNA|length=348bp
ATGAATCATGTAATGTATAATCAGATTTTTCACACGTATAGGCATGATGC
ACGTGAACAAGAGATAAGGCAAGGGCATAAAGGCTTAAGGCCAATCGATG
AAAATCTTTCGTATACTCGTGAGACAAGCACACGTGTAGGAAGACGGAAT
GAGGAAAGAAAACGTGTGCACCACATACAATGGTGGGAGGGAGAATATAC
AAAGAAATTACACGGGGCAAGATTTCGATACCTTCTAAATGATTTTTTTG
GGAGGATGTGTTGGTACTTCCTCTATGCTTCCCGCGCTCGCAAACCCTCG
ATGAGCCGCCCAATTCAATGGTGTCAGTGCATTCACTTTTACACGTAA

protein sequence of rna3852

>rna3852-protein ID=rna3852-protein|Name=rna3852|organism=Nannochloropsis gaditana|type=polypeptide|length=400bp
MKYRGNNSFEGFLFFLAVNWALLSVLVLGTQTGPSGGWGARFQSVGCEIN
PHSKYNKMSSSSGSLREKSRMFNVSVDQGNYISLRAFLGTLPIGGKLQDL
VRDEDDADLPSVEKFLEGLTLKSLKENLGKGLRGGTDRVAAAVDVGVEGE
QQSIDTRDVHQRRLNVYAKDQRTYFDPDVYPDRTFGKLMFPASYYCTGQL
IGKRYVLTAAHCFYSYGTSIDGDNIYHSKFRVAYHTDKEGKHYYAASSAW
GRLWYGTTYPEVYRNSDWAIIELETPLGETQGYVGINPTDLSRQLPMYNK
FSLIGYSEDGYSQTAGIDPKCSLEDAYQGVYFHNCDCAAGASGGALLDAS
FNVVGINTAHVMPSNTKLLRASDYNPTYPNIAVPAYQFMPTYAHILTQID

mRNA from alignment at CM002462.1:224681..226287-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3852 ID=rna3852|Name=rna3852|organism=Nannochloropsis gaditana|type=mRNA|length=1607bp|location=Sequence derived from alignment at CM002462.1:224681..226287- (Nannochloropsis gaditana)
ATGAAGTATAGAGGCAATAACAGTTTCGAAGGGTTTCTCTTTTTCTTGGC
CGTCAACTGGGCGCTTTTGAGTGTACTAGTCTTAGGCACACAGACAGGCC
CCTCGGGAGGATGGGGTGCTCGTTTTCAGAGCGTGGGATGCGAAATAAAC
CCCCATTCTAAGTACAATAAAATGAGCTCCAGCAGTGGATCGTTACGAGA
AAAATCTAGAATGTAAGCAGGAGGGTATTAAAATGGAGAGTCTGACCAGA
CGGGAATCGTGGAGACGAAGAGACTCGTCTGTCGCCGCCAGTCCCTCCTT
CAGGAGTGGTGAAATTCTCTGCATTCACTACCGAAAAGTAGCCCAAATTC
GAAGGAAAAAGGCCCATTGAATGCAAGGCTCCATGACCTGCACCATTTCA
GTTCGTCCCATCCAAACTTTTTGTGTCCTCATACTTTTAGGTTTAATGTG
TCCGTAGATCAAGGTAATTATATAAGCCTGCGAGCCTTTTTGGGGACGCT
TCCCATAGGTGGGAAATTGCAAGATCTTGTTCGGGATGAAGATGACGCCG
ACCTTCCTTCTGTTGAAAAATTTTTGGAAGGCCTGACTCTGAAGAGCTTG
AAGGAAAACTTGGGGAAAGGGCTGCGGGGGGGCACCGACAGGGTGGCCGC
AGCAGTGGATGTAGGGGTGGAGGGAGAGCAGCAGTCCATCGACACAAGGG
ACGTCCACCAAAGGAGGCTAAATGTGTACGCAAAGGACCAACGGACGTAC
TTTGATCCCGATGTTTACCCTGACCGCACGTTCGGCAAGCTCATGTTCCC
TGCCTCGTATTACTGCACAGGCCAGCTGATAGGAAAACGGTAGGTCGGGT
CTGCGGTATGCTGTGTTTTATAAGTCGGTGATGCCTGTCTCTTTGAAATC
AGTTGGGATGCCTCCTCGGCGCCGAGTTTTTCAACGCACATTGTCAGAGT
AAAAGAGAGCCTGTGCTCCCTGGGACTAACCTATTCGTTGCCGCCTGGCA
TTTTCCCTCTCATAGCTACGTTCTAACGGCCGCTCACTGCTTTTATTCTT
ATGGGACATCGATTGACGGCGATAACATCTACCATTCCAAGTTTCGTGTG
GCGTACCACACGGATAAGGAGGGTAAGCACTACTATGCAGCCTCCTCGGC
ATGGGGACGACTGTGGTACGGCACAACATACCCGGAGGTGTATCGAAACA
GCGACTGGGCCATCATAGAGCTGGAGACGCCTTTGGGCGAGACTCAAGGC
TACGTCGGCATCAATCCTACGGATTTGTCGAGGCAATTGCCCATGTACAA
TAAATTTTCGCTGATCGGGTACTCAGAGGATGGGTACAGTCAGACCGCGG
GTATAGACCCTAAGTGCTCTTTGGAAGACGCGTATCAGGGCGTATATTTT
CACAACTGTGACTGCGCTGCGGGAGCAAGCGGCGGTGCCTTGCTCGATGC
TTCTTTCAATGTGGTGGGGATCAATACTGCCCACGTCATGCCCTCCAATA
CAAAACTCTTAAGGGCAAGCGACTACAATCCGACCTACCCAAATATTGCC
GTCCCTGCTTACCAGTTCATGCCTACCTATGCGCATATTCTGACGCAGAT
TGATTAA

Coding sequence (CDS) from alignment at CM002462.1:224681..226287-

>rna3852 ID=rna3852|Name=rna3852|organism=Nannochloropsis gaditana|type=CDS|length=3609bp|location=Sequence derived from alignment at CM002462.1:224681..226287- (Nannochloropsis gaditana)
CTACGTTCTAACGGCCGCTCACTGCTTTTATTCTTATGGGACATCGATTG
ACGGCGATAACATCTACCATTCCAAGTTTCGTGTGGCGTACCACACGGAT
AAGGAGGGTAAGCACTACTATGCAGCCTCCTCGGCATGGGGACGACTGTG
GTACGGCACAACATACCCGGAGGTGTATCGAAACAGCGACTGGGCCATCA
TAGAGCTGGAGACGCCTTTGGGCGAGACTCAAGGCTACGTCGGCATCAAT
CCTACGGATTTGTCGAGGCAATTGCCCATGTACAATAAATTTTCGCTGAT
CGGGTACTCAGAGGATGGGTACAGTCAGACCGCGGGTATAGACCCTAAGT
GCTCTTTGGAAGACGCGTATCAGGGCGTATATTTTCACAACTGTGACTGC
GCTGCGGGAGCAAGCGGCGGTGCCTTGCTCGATGCTTCTTTCAATGTGGT
GGGGATCAATACTGCCCACGTCATGCCCTCCAATACAAAACTCTTAAGGG
CAAGCGACTACAATCCGACCTACCCAAATATTGCCGTCCCTGCTTACCAG
TTCATGCCTACCTATGCGCATATTCTGACGCAGATTGATTAAGTTTAATG
TGTCCGTAGATCAAGGTAATTATATAAGCCTGCGAGCCTTTTTGGGGACG
CTTCCCATAGGTGGGAAATTGCAAGATCTTGTTCGGGATGAAGATGACGC
CGACCTTCCTTCTGTTGAAAAATTTTTGGAAGGCCTGACTCTGAAGAGCT
TGAAGGAAAACTTGGGGAAAGGGCTGCGGGGGGGCACCGACAGGGTGGCC
GCAGCAGTGGATGTAGGGGTGGAGGGAGAGCAGCAGTCCATCGACACAAG
GGACGTCCACCAAAGGAGGCTAAATGTGTACGCAAAGGACCAACGGACGT
ACTTTGATCCCGATGTTTACCCTGACCGCACGTTCGGCAAGCTCATGTTC
CCTGCCTCGTATTACTGCACAGGCCAGCTGATAGGAAAACGATGAAGTAT
AGAGGCAATAACAGTTTCGAAGGGTTTCTCTTTTTCTTGGCCGTCAACTG
GGCGCTTTTGAGTGTACTAGTCTTAGGCACACAGACAGGCCCCTCGGGAG
GATGGGGTGCTCGTTTTCAGAGCGTGGGATGCGAAATAAACCCCCATTCT
AAGTACAATAAAATGAGCTCCAGCAGTGGATCGTTACGAGAAAAATCTAG
AATCTACGTTCTAACGGCCGCTCACTGCTTTTATTCTTATGGGACATCGA
TTGACGGCGATAACATCTACCATTCCAAGTTTCGTGTGGCGTACCACACG
GATAAGGAGGGTAAGCACTACTATGCAGCCTCCTCGGCATGGGGACGACT
GTGGTACGGCACAACATACCCGGAGGTGTATCGAAACAGCGACTGGGCCA
TCATAGAGCTGGAGACGCCTTTGGGCGAGACTCAAGGCTACGTCGGCATC
AATCCTACGGATTTGTCGAGGCAATTGCCCATGTACAATAAATTTTCGCT
GATCGGGTACTCAGAGGATGGGTACAGTCAGACCGCGGGTATAGACCCTA
AGTGCTCTTTGGAAGACGCGTATCAGGGCGTATATTTTCACAACTGTGAC
TGCGCTGCGGGAGCAAGCGGCGGTGCCTTGCTCGATGCTTCTTTCAATGT
GGTGGGGATCAATACTGCCCACGTCATGCCCTCCAATACAAAACTCTTAA
GGGCAAGCGACTACAATCCGACCTACCCAAATATTGCCGTCCCTGCTTAC
CAGTTCATGCCTACCTATGCGCATATTCTGACGCAGATTGATTAAGTTTA
ATGTGTCCGTAGATCAAGGTAATTATATAAGCCTGCGAGCCTTTTTGGGG
ACGCTTCCCATAGGTGGGAAATTGCAAGATCTTGTTCGGGATGAAGATGA
CGCCGACCTTCCTTCTGTTGAAAAATTTTTGGAAGGCCTGACTCTGAAGA
GCTTGAAGGAAAACTTGGGGAAAGGGCTGCGGGGGGGCACCGACAGGGTG
GCCGCAGCAGTGGATGTAGGGGTGGAGGGAGAGCAGCAGTCCATCGACAC
AAGGGACGTCCACCAAAGGAGGCTAAATGTGTACGCAAAGGACCAACGGA
CGTACTTTGATCCCGATGTTTACCCTGACCGCACGTTCGGCAAGCTCATG
TTCCCTGCCTCGTATTACTGCACAGGCCAGCTGATAGGAAAACGATGAAG
TATAGAGGCAATAACAGTTTCGAAGGGTTTCTCTTTTTCTTGGCCGTCAA
CTGGGCGCTTTTGAGTGTACTAGTCTTAGGCACACAGACAGGCCCCTCGG
GAGGATGGGGTGCTCGTTTTCAGAGCGTGGGATGCGAAATAAACCCCCAT
TCTAAGTACAATAAAATGAGCTCCAGCAGTGGATCGTTACGAGAAAAATC
TAGAATCTACGTTCTAACGGCCGCTCACTGCTTTTATTCTTATGGGACAT
CGATTGACGGCGATAACATCTACCATTCCAAGTTTCGTGTGGCGTACCAC
ACGGATAAGGAGGGTAAGCACTACTATGCAGCCTCCTCGGCATGGGGACG
ACTGTGGTACGGCACAACATACCCGGAGGTGTATCGAAACAGCGACTGGG
CCATCATAGAGCTGGAGACGCCTTTGGGCGAGACTCAAGGCTACGTCGGC
ATCAATCCTACGGATTTGTCGAGGCAATTGCCCATGTACAATAAATTTTC
GCTGATCGGGTACTCAGAGGATGGGTACAGTCAGACCGCGGGTATAGACC
CTAAGTGCTCTTTGGAAGACGCGTATCAGGGCGTATATTTTCACAACTGT
GACTGCGCTGCGGGAGCAAGCGGCGGTGCCTTGCTCGATGCTTCTTTCAA
TGTGGTGGGGATCAATACTGCCCACGTCATGCCCTCCAATACAAAACTCT
TAAGGGCAAGCGACTACAATCCGACCTACCCAAATATTGCCGTCCCTGCT
TACCAGTTCATGCCTACCTATGCGCATATTCTGACGCAGATTGATTAAGT
TTAATGTGTCCGTAGATCAAGGTAATTATATAAGCCTGCGAGCCTTTTTG
GGGACGCTTCCCATAGGTGGGAAATTGCAAGATCTTGTTCGGGATGAAGA
TGACGCCGACCTTCCTTCTGTTGAAAAATTTTTGGAAGGCCTGACTCTGA
AGAGCTTGAAGGAAAACTTGGGGAAAGGGCTGCGGGGGGGCACCGACAGG
GTGGCCGCAGCAGTGGATGTAGGGGTGGAGGGAGAGCAGCAGTCCATCGA
CACAAGGGACGTCCACCAAAGGAGGCTAAATGTGTACGCAAAGGACCAAC
GGACGTACTTTGATCCCGATGTTTACCCTGACCGCACGTTCGGCAAGCTC
ATGTTCCCTGCCTCGTATTACTGCACAGGCCAGCTGATAGGAAAACGATG
AAGTATAGAGGCAATAACAGTTTCGAAGGGTTTCTCTTTTTCTTGGCCGT
CAACTGGGCGCTTTTGAGTGTACTAGTCTTAGGCACACAGACAGGCCCCT
CGGGAGGATGGGGTGCTCGTTTTCAGAGCGTGGGATGCGAAATAAACCCC
CATTCTAAGTACAATAAAATGAGCTCCAGCAGTGGATCGTTACGAGAAAA
ATCTAGAAT

Synonyms

Publications