EWM26864.1, cds3815 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|585108959|gb|EWM26864.1| (plastid lipid associated protein [Nannochloropsis gaditana]) HSP 1 Score: 453.751 bits (1166), Expect = 2.158e-161 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 Query: 1 MSVLVARRQLFLLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSGFIFYRPLLRSSSCCVLCF 225 MSVLVARRQLFLLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSGFIFYRPLLRSSSCCVLCF Sbjct: 1 MSVLVARRQLFLLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSGFIFYRPLLRSSSCCVLCF 225
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|760439905|ref|XP_011397021.1| (putative plastid-lipid-associated protein 4, chloroplastic, partial [Auxenochlorella protothecoides] >gi|675351695|gb|KFM24135.1| putative plastid-lipid-associated protein 4, chloroplastic, partial [Auxenochlorella protothecoides]) HSP 1 Score: 116.316 bits (290), Expect = 4.920e-29 Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 0 Query: 50 SKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLG---PLNFKFQSENYLDTTYLDKDMRISRS 206 + ++T+LL E + RGL A+ E I L+ LE +NPT +P +S L+ +W L++TTS+SILG++RP+ RP GPIYQ ++ +N E P A+E A +EP+S V V F+R +L P+ + LDTTYLD+D+RISR Sbjct: 11 AHLQTQLLEAIEPLQRGLTATPSDVERIEGLVVELEGRNPTAAPVNSPLLNGQWELLYTTSDSILGRSRPSFLRPKGPIYQTLDNESLRGKNRET---TPLFNAVE----AELEPISDSEVAVQFKRFWLAGFIPVPAPASARGRLDTTYLDEDLRISRG 163
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|545375557|ref|XP_005651947.1| (plastid fibrillin 3 [Coccomyxa subellipsoidea C-169] >gi|384253929|gb|EIE27403.1| plastid fibrillin 3 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 106.301 bits (264), Expect = 2.917e-25 Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 0 Query: 55 ELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQR---LFLGPLNFKFQSENYLDTTYLDKDMRISRS 206 +LL + RG AS ++ + L + LE+ NP K +S L++A+WRL++TTS SILG T+P RP GPIYQ I+ TA+N+E PF + AT+ P ++ RV V F+ L L P+ + LDTTYLD+D+RISR Sbjct: 6 QLLELISRLDRGASASTSEKSEVDQLAQKLERVNPNKKALASPLLSAKWRLLYTTSASILGTTKPPFLRPQGPIYQTIDAQNLTAQNQET---WPFF----NQVKATLTPETASRVAVQFREFKILGLIPVKAPPSARGKLDTTYLDEDLRISRG 153
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|302766329|ref|XP_002966585.1| (hypothetical protein SELMODRAFT_85410 [Selaginella moellendorffii] >gi|300166005|gb|EFJ32612.1| hypothetical protein SELMODRAFT_85410 [Selaginella moellendorffii]) HSP 1 Score: 105.531 bits (262), Expect = 9.622e-25 Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = 0 Query: 47 GPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNV---FFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRS 206 G +K ELL + E + RG A+++ + I L + LE NPTK+P S L+ +W L++TTS+SIL RP + RP GPIYQ IN A+N E PF + A + P SS +V V FF+ L P+ ++ LD TYLD+D+R+SR Sbjct: 17 GDKDAVKKELLSEIEPLDRGAAATEDDRMRIDKLAQKLEALNPTKAPLKSPLLNGKWELLYTTSQSILKSNRPKLLRPNGPIYQAINNDTLRAQNLET---WPFF----NQVTANLTPASSSKVVVNFDFFKIAGLIPIKAPGRARGELDVTYLDEDLRVSRG 172
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|552826874|ref|XP_005847116.1| (hypothetical protein CHLNCDRAFT_134838 [Chlorella variabilis] >gi|307106769|gb|EFN55014.1| hypothetical protein CHLNCDRAFT_134838 [Chlorella variabilis]) HSP 1 Score: 105.145 bits (261), Expect = 1.149e-24 Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 0 Query: 49 VSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQR---LFLGPLNFKFQSENYLDTTYLDKDMRISRS 206 V++ K ELL + RGL A+ E ++ + L LE+ NPTK P +S LI +W L++TTS+SILG ++PA RP GPIYQ I+ TARN+E P + A + P S +V V F+ L L P+ + L TYLD ++R+SR Sbjct: 15 VAEAKQELLEAIAPLKRGLTATDEDRQQVERLASKLERMNPTKRPLASDLINGQWELLYTTSDSILGMSKPAFLRPSGPIYQVIDAKALTARNKET---APLF----NQVSAELIPESDSKVKVQFKEFKILGLVPIKAPPSAVGELAVTYLDDELRVSRG 168
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|298710568|emb|CBJ31999.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 106.301 bits (264), Expect = 1.318e-24 Identity = 62/155 (40.00%), Postives = 89/155 (57.42%), Query Frame = 0 Query: 53 KTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKF--QSENYLDTTYLDKDMRISR 205 K ELL + RGL AS E + + L + +EK NP SS L+ RW LV+TTS SIL K P V RP GPIYQ I+ A N + I+PIPFL + + A + P +S +V F+ +GPL K ++++ +D TY+D ++R++R Sbjct: 65 KQELLDAIVPLKRGLTASDEDKAVVEKLAQKVEKLNPNPKSLSSPLVNGRWELVYTTSMSILSKKNP-VMRPSGPIYQDIDAPGLRALNAQYIQPIPFL-KMPYQVSAELTPTTSSATDVQFKEFTVGPLKIKAPERAQSAIDITYVDDEVRVTR 217
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|302801331|ref|XP_002982422.1| (hypothetical protein SELMODRAFT_116147 [Selaginella moellendorffii] >gi|300150014|gb|EFJ16667.1| hypothetical protein SELMODRAFT_116147 [Selaginella moellendorffii]) HSP 1 Score: 105.145 bits (261), Expect = 1.693e-24 Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = 0 Query: 47 GPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNV---FFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRS 206 G +K ELL + E + RG A+++ + I L + LE NPTK+P S L+ +W L++TTS+SIL RP + RP GPIYQ IN A+N E PF + A + P SS +V V FF+ L P+ ++ LD TYLD+D+R+SR Sbjct: 17 GDKDAVKKELLSEIEPLDRGAAATEDDRMRIDKLAQKLEALNPTKAPLKSPLLNGKWELLYTTSQSILKSNRPKLLRPNGPIYQAINNDTLRAQNLET---WPFF----NQVTANLTPSSSSKVVVNFDFFKIAGLIPIKAPGRARGELDVTYLDEDLRVSRG 172
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|1179541464|ref|XP_020691680.1| (probable plastid-lipid-associated protein 4, chloroplastic [Dendrobium catenatum]) HSP 1 Score: 103.219 bits (256), Expect = 3.768e-23 Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 0 Query: 52 IKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLG---PLNFKFQSENYLDTTYLDKDMRISRS 206 +K ELL+ E+ RG EA+ E+QE + + + LE NP P S L+ +W L++TTS+SIL RP +FRP G IYQ IN A+N I P+ + A + P++++RV V F R +G P+ ++ L+ TYLD+++R+SR Sbjct: 83 VKLELLKAIAELDRGAEATSEEQERVDQIARELEAVNPITEPLKSDLLNGKWELLYTTSKSILQPQRPKIFRPFGKIYQAINADTLRAQN---IETWPYF----NQVTANLVPLNARRVAVKFDRFKIGGLIPIVAPGRARGELEITYLDEEIRVSRG 233
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|1210182295|dbj|BAZ01356.1| (PAP fibrillin family protein [Tolypothrix tenuis PCC 7101] >gi|1210255719|dbj|BAZ74721.1| PAP fibrillin family protein [Aulosira laxa NIES-50]) HSP 1 Score: 101.679 bits (252), Expect = 3.843e-23 Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 0 Query: 53 KTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPT-SSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLG---------PLNF--------KF----------QSENYLDTTYLDKDMRISRS 206 KT LL +RGL AS++Q+++ILA I +LE NPT P +S+L+ WRL++TTS+++L R F+ +G IYQYI + + N +I +P+L + ++ A EP+S +RV V F R +G P NF KF + + +LD TYLDKD+RI R Sbjct: 4 KTALLDAIAGTNRGLLASEKQKQAILAAIATLEDLNPTPLPVEASSLLDGNWRLIYTTSKALLNLDRLPFFK-LGQIYQYIRVENTSVYNIAEIYGLPYLEGL-VSVAAKFEPLSGRRVQVKFNRSIIGWQRLLGYNSPENFIQEIEAGSKFTAIDTAINSDRQQGWLDITYLDKDLRIGRG 183
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|1189381988|gb|OSX69588.1| (hypothetical protein BU14_1367s0002 [Porphyra umbilicalis]) HSP 1 Score: 102.834 bits (255), Expect = 4.009e-23 Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 0 Query: 48 PVSKIKTELLRK--AEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFK--FQSENYLDTTYLDKDMRISR 205 P + +K EL+ + + R + + + QE I A+++ LE NPT P SA + A W+LV+TTS SILG +RP RP I+Q +++ GT N EQ+ + + AT RV V FQR GPL+ K ++ +LD TYLD ++R+SR Sbjct: 63 PTTAVKAELMTAIASTRLGRSVASDRRAQEKIDAIVRRLEALNPTPVPVESAELGAVWKLVYTTSASILGTSRPPPLRPNDEIFQSVDVGAGTITNSEQL----AGGLLTNKVHATFGVKPPMRVQVQFQRFQFGPLSVKAPASAKGFLDVTYLDDEVRVSR 220 The following BLAST results are available for this feature:
BLAST of EWM26864.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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