rna3807, rna3807 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3807
Unique Name	rna3807
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	846
Alignment location	CM002462.1:101672..103374 +

Link to JBrowse

Properties


Property Name	Value
Product	Golgi apparatus membrane protein TVP15
Orig transcript id	gnl\|cribi\|Naga_100576g1.2311.mrna
Orig protein id	gnl\|cribi\|Naga_100576g1.2311
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:101672..103374 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100576g1	gene3665	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3807	rna3807-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26875.1	cds3798	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:101672..103374+
coding sequence from alignment at CM002462.1:101672..103374+

mRNA sequence

>rna3807 ID=rna3807|Name=rna3807|organism=Nannochloropsis gaditana|type=mRNA|length=846bp
ATGGCACGCTGTTTTGTGGACTGCACAGGTCCGGCAATCTCCCCCTCTCC
CAGCAAGCTTGTCTTCCTTACCATCATGCTCTGCTTCGTCACATCCTTCG
CCCTACAAAGGCATGACCCAACATTGTCGGTGTCCTGCTCGGCCTCGTCG
CCGCCGTCCTCTTCCTCCTCCCCAACAAACTCCGCTCAATCCTCCCCATT
TCCTCCTCCCTCTCTTCCTCGAGTACGGGGTCCGCGTGAGTTAGGACGTA
TGTTAGAAGAGGAAAAGACGCGCGCATTGGCGCAAGAACGAGAAGCAGAC
GAACGACGTTTCCAATTCGAAACAGAAATGGACGCTGAAGGCATCCGCCG
CCCGCGAGACCGCAAGCTTTCCTTTACACCGGCCCCCGCCTTCCTGTCCT
CCTCCCACGTCCGGGAACGACCTGGTGGGAAAGGCAGCGCAGATACAAAA
GCAAGAATGAACATAGAGCCTATGGCGACTGGTGGAATGGCGGCAGCGGA
GGAGGAGGGAGAACTGGCAATTGACCGACACATGCTGCGTAAGGCATACG
AGGTCCGTCGCGCCCAGGTAGAGTCATTGAGTCGTTTTCAATCCAAACGG
AAACGACACGGACGGCAAAGTGGGCAGGTGGGTGCACAGGGAAGAATTGT
GGGAGGTGACGGCGAGAAAAAGATGGGAGAGGGGTTTCTACTCATGGGGG
GTGGGAGGGGAGAGGGAAGAGGTGGGAAGGGCCCAATATCAATATCTCAA
CGGCATCACCGTACCTATTTTTCCAATGCCCATCGAATAAGACGAGGACG
TCATTCGTTCGTGTACGCGTCAAGTTTCCGGACGGGGCCGCTTTGA

protein sequence of rna3807

>rna3807-protein ID=rna3807-protein|Name=rna3807|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVG
FLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTN
FLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIIL
CSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP

mRNA from alignment at CM002462.1:101672..103374+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3807 ID=rna3807|Name=rna3807|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp|location=Sequence derived from alignment at CM002462.1:101672..103374+ (Nannochloropsis gaditana)
CTTGTGCGTGTGAAAAGCGAAGTGGTACGTGTACCAATCATTTATTTCCA
TTTTTCTGTCATTCTTCTGATACGCATCAGATTAAGAGAGGCCAAGGATG
CTGAACGCAGAAGAAACTAAAACTTCCGGGGCGGCGGATGCTTCCCACGG
AGGCAAAAAGGCAAACACTACATCAACCAAGGTACGAGTGGTGAACTGAG
GAATTTAAGTTTTCTTCTGTGAGCTTGAAGGTGTACATGTTCTTCGTCGC
TTGCCCGATGCGTTTGGCCGTCTTGAGAATTTTGTTCTACTTGCACTAAG
GCAAGATATGCGCAAATAAATCACCATCTCCGAGCAAGATGATCTCTAAA
CATATGCTTCTATCTTGATAACATGTTAAGATATTTTTTTACTTATTTTT
CGCTTATTTGCTCTTCTTGAACGCATCACTATCCGTATGCTCCCAGGTCA
ATCAAGTGAGCTGGTTACAGCGcctgcggagggagggttgcTTGCCTCTC
AAAACTGTTGGGTTTTTAACCGGTAGGCTTGATGGACAGAATGAAATGAA
GAAATTATGACGGACTATAGAAGGAAGGGTCCTCGTGTGATGAGGTCATG
TCACGGAGGCCGCCGATGCGGCGGGCGGCTTCcctaacctcctcctcatt
ccctcctttttaCTCGAGACACCCACGTATTTCTCTTTGCTCCTGGCTTC
TTCCTGCCTCACGATCAGGCTTGGCGCTCACGGTCATCGCCTGCCTGACA
TTTGCTGCGAAGTTATTGGATTTGAATGTGGTGGGCGCGATCAATCaggt
gagggaaggaagctgaggagaaggagaaggggagaaggaggcgggggatg
gaAACTTAACAATTTGTGCGGAGGGAAAACAACAACGTGATTACGGGTAG
CGTcatcccttccatctcctcccccctctctccccccctccttctcttct
ctcctccgTTCCCTTAACTCGCGCCGGCAGGTTTGGTTGGCGATCTTCGG
GCTGATCATGATGCTTCTAGAAGCTTCTTCGAGCACCAACTTCCTGTCCC
AGCGGGTCTCGCGCTGGTTAAATGAGAATATGAAGATCCTCACATACATG
ACTGGCCGAGGTCTATTTTATATTTTTGTTGGCACGGTAAGGGCAGTAAC
GTATTCAACGGACGGTTGCTGTCCCATGATTGACACGACGGAACACTCGT
GGGCGTCGGAGGTGGGGAGTATGGATAAAGCATGTCTTCATGTCCCTTGG
AGATGTGGTCTTCCAGGCCCCCACTGTTCTCTTACCGTGGTTTCTCTCAT
GTGCACGGGGCGTCGCGATCGAAAGACTCCTCCTAcctatatatatatat
atatgtagaTAGAGAAATACCTCTGCCTCGTTTTCAGGAGGACCATGACG
GGTGTAGATACGGTAGATCATGTTTAAGATTTAAAGGCAAGTCATCAGGC
TCGCACacacccctcccgccctccctccctccctcccttcctccctccct
cccccccttaaAAGCTCGAGCTGGGTTTCTGGTTCTCCACCCTACACCTC
GTGATTGGCATTATCCTCTGCTCCTTGGGTGGCGTGACCATCTTCGTGGG
CTGGGCGCTGGGCATGAAACTCCGCTCCCTTCGGCGCGACATGGCCCAGG
AGGATGACGCGCGCAGGGTGAGTCAGAGAGCACCCTgaccccctctccca
ccc

Coding sequence (CDS) from alignment at CM002462.1:101672..103374+

>rna3807 ID=rna3807|Name=rna3807|organism=Nannochloropsis gaditana|type=CDS|length=2850bp|location=Sequence derived from alignment at CM002462.1:101672..103374+ (Nannochloropsis gaditana)
ATGCTGAACGCAGAAGAAACTAAAACTTCCGGGGCGGCGGATGCTTCCCA
CGGAGGCAAAAAGGCAAACACTACATCAACCAAGGTCAATCAAGTGAGCT
GGTTACAGCGcctgcggagggagggttgcTTGCCTCTCAAAACTGTTGGG
TTTTTAACCGGCTTGGCGCTCACGGTCATCGCCTGCCTGACATTTGCTGC
GAAGTTATTGGATTTGAATGTGGTGGGCGCGATCAATCagGTTTGGTTGG
CGATCTTCGGGCTGATCATGATGCTTCTAGAAGCTTCTTCGAGCACCAAC
TTCCTGTCCCAGCGGGTCTCGCGCTGGTTAAATGAGAATATGAAGATCCT
CACATACATGACTGGCCGAGGTCTATTTTATATTTTTGTTGGCACGCTCG
AGCTGGGTTTCTGGTTCTCCACCCTACACCTCGTGATTGGCATTATCCTC
TGCTCCTTGGGTGGCGTGACCATCTTCGTGGGCTGGGCGCTGGGCATGAA
ACTCCGCTCCCTTCGGCGCGACATGGCCCAGGAGGATGACGCGCGCAGGG
TGAGTCAGAGAGCACCCTgaATGCTGAACGCAGAAGAAACTAAAACTTCC
GGGGCGGCGGATGCTTCCCACGGAGGCAAAAAGGCAAACACTACATCAAC
CAAGGTCAATCAAGTGAGCTGGTTACAGCGcctgcggagggagggttgcT
TGCCTCTCAAAACTGTTGGGTTTTTAACCGGCTTGGCGCTCACGGTCATC
GCCTGCCTGACATTTGCTGCGAAGTTATTGGATTTGAATGTGGTGGGCGC
GATCAATCagGTTTGGTTGGCGATCTTCGGGCTGATCATGATGCTTCTAG
AAGCTTCTTCGAGCACCAACTTCCTGTCCCAGCGGGTCTCGCGCTGGTTA
AATGAGAATATGAAGATCCTCACATACATGACTGGCCGAGGTCTATTTTA
TATTTTTGTTGGCACGCTCGAGCTGGGTTTCTGGTTCTCCACCCTACACC
TCGTGATTGGCATTATCCTCTGCTCCTTGGGTGGCGTGACCATCTTCGTG
GGCTGGGCGCTGGGCATGAAACTCCGCTCCCTTCGGCGCGACATGGCCCA
GGAGGATGACGCGCGCAGGGTGAGTCAGAGAGCACCCTgaATGCTGAACG
CAGAAGAAACTAAAACTTCCGGGGCGGCGGATGCTTCCCACGGAGGCAAA
AAGGCAAACACTACATCAACCAAGGTCAATCAAGTGAGCTGGTTACAGCG
cctgcggagggagggttgcTTGCCTCTCAAAACTGTTGGGTTTTTAACCG
GCTTGGCGCTCACGGTCATCGCCTGCCTGACATTTGCTGCGAAGTTATTG
GATTTGAATGTGGTGGGCGCGATCAATCagGTTTGGTTGGCGATCTTCGG
GCTGATCATGATGCTTCTAGAAGCTTCTTCGAGCACCAACTTCCTGTCCC
AGCGGGTCTCGCGCTGGTTAAATGAGAATATGAAGATCCTCACATACATG
ACTGGCCGAGGTCTATTTTATATTTTTGTTGGCACGCTCGAGCTGGGTTT
CTGGTTCTCCACCCTACACCTCGTGATTGGCATTATCCTCTGCTCCTTGG
GTGGCGTGACCATCTTCGTGGGCTGGGCGCTGGGCATGAAACTCCGCTCC
CTTCGGCGCGACATGGCCCAGGAGGATGACGCGCGCAGGGTGAGTCAGAG
AGCACCCTgaATGCTGAACGCAGAAGAAACTAAAACTTCCGGGGCGGCGG
ATGCTTCCCACGGAGGCAAAAAGGCAAACACTACATCAACCAAGGTCAAT
CAAGTGAGCTGGTTACAGCGcctgcggagggagggttgcTTGCCTCTCAA
AACTGTTGGGTTTTTAACCGGCTTGGCGCTCACGGTCATCGCCTGCCTGA
CATTTGCTGCGAAGTTATTGGATTTGAATGTGGTGGGCGCGATCAATCag
GTTTGGTTGGCGATCTTCGGGCTGATCATGATGCTTCTAGAAGCTTCTTC
GAGCACCAACTTCCTGTCCCAGCGGGTCTCGCGCTGGTTAAATGAGAATA
TGAAGATCCTCACATACATGACTGGCCGAGGTCTATTTTATATTTTTGTT
GGCACGCTCGAGCTGGGTTTCTGGTTCTCCACCCTACACCTCGTGATTGG
CATTATCCTCTGCTCCTTGGGTGGCGTGACCATCTTCGTGGGCTGGGCGC
TGGGCATGAAACTCCGCTCCCTTCGGCGCGACATGGCCCAGGAGGATGAC
GCGCGCAGGGTGAGTCAGAGAGCACCCTgaATGCTGAACGCAGAAGAAAC
TAAAACTTCCGGGGCGGCGGATGCTTCCCACGGAGGCAAAAAGGCAAACA
CTACATCAACCAAGGTCAATCAAGTGAGCTGGTTACAGCGcctgcggagg
gagggttgcTTGCCTCTCAAAACTGTTGGGTTTTTAACCGGCTTGGCGCT
CACGGTCATCGCCTGCCTGACATTTGCTGCGAAGTTATTGGATTTGAATG
TGGTGGGCGCGATCAATCagGTTTGGTTGGCGATCTTCGGGCTGATCATG
ATGCTTCTAGAAGCTTCTTCGAGCACCAACTTCCTGTCCCAGCGGGTCTC
GCGCTGGTTAAATGAGAATATGAAGATCCTCACATACATGACTGGCCGAG
GTCTATTTTATATTTTTGTTGGCACGCTCGAGCTGGGTTTCTGGTTCTCC
ACCCTACACCTCGTGATTGGCATTATCCTCTGCTCCTTGGGTGGCGTGAC
CATCTTCGTGGGCTGGGCGCTGGGCATGAAACTCCGCTCCCTTCGGCGCG
ACATGGCCCAGGAGGATGACGCGCGCAGGGTGAGTCAGAGAGCACCCTga

Synonyms

Publications