EWM26875.1, cds3798 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|585108987|gb|EWM26875.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 382.489 bits (981), Expect = 2.663e-134 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP 189
MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP
Sbjct: 1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP 189
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|1210522616|dbj|GAX18629.1| (hypothetical protein FisN_10Hh163 [Fistulifera solaris]) HSP 1 Score: 74.7146 bits (182), Expect = 7.303e-13 Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 0
Query: 1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQE 178
+L+A T+ A AS A T +Q+ +REG L + +GFL GLA+ V L + + ++ V+ +FG+I++ ++A SQ++ W++ K L Y GRGLF+ FVGTL++ + L +G + +G V + VG A ++R +R + E
Sbjct: 13 LLDAGVVSTAAAGGASFFNHAAQT----------IQQAQREGPLTFRILGFLGGLAMIVSNGLAILERFFSFSFARSLMAVYGVVFGVIIVFMDAPFPI-ICSQKIQTWIHSYAKFLDYTWGRGLFFFFVGTLQVSN-VNMLDWAVGGFMIFVGVVAMGVGMATANQMRLVRFAVKDE 178
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|219120767|ref|XP_002185615.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582464|gb|ACI65085.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 71.2478 bits (173), Expect = 1.054e-11 Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 0
Query: 35 LQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARR 183
+++ R EG L +T+GFL GLA+ + L + N GA+ + +FG+I+ +LEA SQR+ + K L + GRG Y FVGTL++ W + L +G + +G I VG A LR L+ + E+ +
Sbjct: 34 IKKARAEGPLTFRTLGFLGGLAMIISNGLAILDRFFSFNFAGAMIAFYGVLFGVIITMLEAPGPC---SQRLQGGIRFYAKFLDFTWGRGALYFFVGTLQVSNW-NMLDWAVGGFMIFVGVTAIGVGIAAARDLRLLKFAIQNENHLKE 178
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|1210523976|dbj|GAX17300.1| (hypothetical protein FisN_10Lh163 [Fistulifera solaris]) HSP 1 Score: 63.1586 bits (152), Expect = 1.126e-8 Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 0
Query: 40 REGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQE 178
+EG L + +GFL GLA+ V L + + ++ V+ IFG+I++ ++A SQ++ ++ K L Y GRGLF+ FVGTL++ + L +G + +G V + VG A ++R +R + E
Sbjct: 42 KEGPLTFRILGFLGGLAMIVSNGLAILERFFSFSFARSLMAVYGVIFGVIIVFMDAPFPI-ICSQKIQTGIHSYAKFLDYTWGRGLFFFFVGTLQVSN-VNMLDWAVGGFMIFVGVVAMGVGMATANQMRLVRFAVKDE 178
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|1072237885|gb|OEU22612.1| (hypothetical protein FRACYDRAFT_267342 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 62.003 bits (149), Expect = 3.369e-8 Identity = 39/155 (25.16%), Postives = 86/155 (55.48%), Query Frame = 0
Query: 35 LQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP 189
+++ +G L+ + + G+A ++ + ++ L++VGA+ + + + G+I+++LE LS+ + +++ L ++ GRG+ Y+F+G L+L + +L+ G +C++GG+ I VG+ KL+++R+ + ED R Q A
Sbjct: 43 IKKQAEDGDQSLRFLALIGGIACIIVGIFETTSHIMRLHLVGALIDICVVLLGVIVVILEGKDM--LLSESFVQKIHKYALFLKFLWGRGMLYLFIGALQL-YQIDLFNLICGGYMCAIGGLYIVVGYRTANKLKTMRKSLYSEDTLRVKFQNAD 194
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|298707597|emb|CBJ30176.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 58.151 bits (139), Expect = 6.451e-7 Identity = 40/140 (28.57%), Postives = 73/140 (52.14%), Query Frame = 0
Query: 40 REGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQED 179
R+G + +K + ++ G+ L V +F L+ V A+ +++ FG ++LLEA SS L +++ +++ T + GRG F+IFVGTL L W + +++G+ L +G I+ G L +L +M +
Sbjct: 53 RDGPVSIKILSYIAGILLVVTGFFSFFGSFFTLHPVDAVVHLYMFAFGWAILLLEARSS--ILPKKIVYNIHKYCAFTTVVWGRGAFFIFVGTLALAQWV-FISILVGLYLVIIGAGMIYWGQEAYKNLDALHGEMKNPE 189 The following BLAST results are available for this feature:
BLAST of EWM26875.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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