EWM26878.1, cds3796 (CDS) Nannochloropsis gaditana

Overview
NameEWM26878.1
Unique Namecds3796
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:97758..97951 +
Alignment locationCM002462.1:98163..98721 +
Alignment locationCM002462.1:98821..98946 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26878.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100576g3.2314.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:97758..97951 +
CM002462.1supercontigCM002462.1:98163..98721 +
CM002462.1supercontigCM002462.1:98821..98946 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025715FoP_duplication
Homology
BLAST of EWM26878.1 vs. NCBI_GenBank
Match: gi|585108990|gb|EWM26878.1| (hypothetical protein Naga_100576g3 [Nannochloropsis gaditana])

HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MGMSTQGVVDGRILAQQSTPHIYLTHGALISHRGLPSSILAFVMVLFGGRGGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGRGVGGSRGVAGVASRAGGGRGGVRGRGGRGAGRGRGGGRGRGRGAGRGGGRGGGKKVGKEDLDAEMDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATETERESIERGSKVSRGGSGIIPQEWLLPGVRTSKNDVPRPLLSL 292
            MGMSTQGVVDGRILAQQSTPHIYLTHGALISHRGLPSSILAFVMVLFGGRGGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGRGVGGSRGVAGVASRAGGGRGGVRGRGGRGAGRGRGGGRGRGRGAGRGGGRGGGKKVGKEDLDAEMDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATETERESIERGSKVSRGGSGIIPQEWLLPGVRTSKNDVPRPLLSL
Sbjct:    1 MGMSTQGVVDGRILAQQSTPHIYLTHGALISHRGLPSSILAFVMVLFGGRGGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGRGVGGSRGVAGVASRAGGGRGGVRGRGGRGAGRGRGGGRGRGRGAGRGGGRGGGKKVGKEDLDAEMDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATETERESIERGSKVSRGGSGIIPQEWLLPGVRTSKNDVPRPLLSL 292          
BLAST of EWM26878.1 vs. NCBI_GenBank
Match: gi|553187372|ref|XP_005854597.1| (hypothetical protein NGA_0195400, partial [Nannochloropsis gaditana CCMP526] >gi|422294463|gb|EKU21763.1| hypothetical protein NGA_0195400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 176.792 bits (447), Expect = 6.132e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query:   44 MVLFGGRGGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGR 134
            MVLFGGRGGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGR
Sbjct:    1 MVLFGGRGGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGR 91          
BLAST of EWM26878.1 vs. NCBI_GenBank
Match: gi|553187375|ref|XP_005854598.1| (hypothetical protein NGA_0195500 [Nannochloropsis gaditana CCMP526] >gi|422294464|gb|EKU21764.1| hypothetical protein NGA_0195500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 111.694 bits (278), Expect = 6.893e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
Query:  199 MDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATETE 251
            MDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATETE
Sbjct:    1 MDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATETE 53          
BLAST of EWM26878.1 vs. NCBI_GenBank
Match: gi|298706786|emb|CBJ29709.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.077 bits (144), Expect = 4.350e-7
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0
Query:  187 GKKVGKE-DLDAEMDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYW-EAKEKAAAGAGAGTATE 249
            GKK  KE DLD  +DEY FKAGKGPDPK+       ASLD  +DSYW +A +K    A AG   E
Sbjct:  150 GKKAAKETDLDEGLDEYWFKAGKGPDPKV-------ASLDRGLDSYWSKATDKTNGDAAAGDKME 207          
BLAST of EWM26878.1 vs. NCBI_GenBank
Match: gi|1214710595|gb|OWZ21670.1| (hypothetical protein PHMEG_0003759 [Phytophthora megakarya])

HSP 1 Score: 59.6918 bits (143), Expect = 6.309e-7
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 0
Query:  189 KVGKEDLDAEMDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTA 247
            K   EDLD EMDEY  +AGKGPDPK AQ       LD +M+ YW AK  A  GA A TA
Sbjct:  169 KAKPEDLDMEMDEYWHEAGKGPDPKAAQ-------LDRQMEEYWAAKP-AQGGAAAPTA 219          
The following BLAST results are available for this feature:
BLAST of EWM26878.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585108990|gb|EWM26878.1|0.000e+0100.00hypothetical protein Naga_100576g3 [Nannochloropsi... [more]
gi|553187372|ref|XP_005854597.1|6.132e-53100.00hypothetical protein NGA_0195400, partial [Nannoch... [more]
gi|553187375|ref|XP_005854598.1|6.893e-28100.00hypothetical protein NGA_0195500 [Nannochloropsis ... [more]
gi|298706786|emb|CBJ29709.1|4.350e-753.85expressed unknown protein [Ectocarpus siliculosus][more]
gi|1214710595|gb|OWZ21670.1|6.309e-755.93hypothetical protein PHMEG_0003759 [Phytophthora m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3805rna3805Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications