rna3805, rna3805 (mRNA) Nannochloropsis gaditana

Overview
Namerna3805
Unique Namerna3805
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1138
Alignment locationCM002462.1:97739..98946 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100576g3.2314.mrna
Orig protein idgnl|cribi|Naga_100576g3.2314
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:97739..98946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100576g3gene3663Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3805rna3805-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26878.1cds3796Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3805 ID=rna3805|Name=rna3805|organism=Nannochloropsis gaditana|type=mRNA|length=1138bp
TTCCCATCCAGGTGGCCAACACCTACACTTTGTGGGAGGAGTGTTTGCTG
TTGATTGCCATGTGCGAGACGGAGGAGGGACGCGGGATGCAAAGCCGGAT
CCAGCTCTATTGGCGATCCATTATCTTTAACGAGATCCCCTCTCGCGCCC
AGTCTCCGGAGCTTCAGGCGTGGCTCGAGCGACAAGCGCGCGACACCCTC
TCCCGATGGTGGTCCCCAGGGAGGGGGGGGCGGGGGGTGGGGGTAGGCAA
GCCGGACGGGGACCTTGACGCCTCGGACGATAAGCCGCTTCGTACGCTGT
TCGAGCGGATCCAGCATCTCTCCCGTTCCATGCGCCTGCAAGACGGTGGG
AAAAGCACCAGCGCAAACAGCGCCTTCCCGCTCCGATACTTGGTTGAGGT
CCTGTTGGAAGTCGAGGCAGAGGTCGACGCCGCTCTGGGTCGCGTTCCCT
CCTTCCCTCCCTCCCCCGGCCCCTGCTTCCCCCACCGCACATGGCGGGCC
CTGCGGCAGGTGCAATGGGCCTTCATCGACTTGTTCTTGGAGCACGTGAG
CGTCTACCGGGAGTCAAGGATGAAGGCGCCAGAGGTCTCGCAACCCGGGA
GAACCTACCCGCCTGCCTTCCATCGGCCCATGTCCTGGTCCCGGGTGCAT
GTGTTGGACGCCCTGTGTGACCTGACCACCCAGTGGTACGCGGCCTTGAA
AGAGGCGCCGACCGTGGGCGGACTCGGGCAAGGAGAAGGCGTGATGATCG
ATACCCGGCAACAGTCCATGGTGGTCCGAGAACTCTCGCGCCTGGCCAAC
ACCACGCATGCCGCAGAGTTAGAGGCCAAGCCCATTGTGGAGGAGCTCTG
CAGGTTGCGGGAGCGCTTTCAATTTTATCCTGAACACATGGATTAAAGGG
AGCAATTGACTCTCTGCGAGAAGGTGAATGGTTTGAGGCTATTTAGTGTG
GGAATAGTGGGCCGCAATAGCACAAAATAAAGAAAGAGAGGAAGGAGGAG
AGATGCCAACGAAAGTCTGAATTGCCCGCATTGAAACAAAGAACGGAACA
TCATGTAACCGATACTGATGGTCTGAGAAGATATTGTTTGCCTCCCTGGC
CTGTATTTTTTTTGTGAAAGGTATCTGCAGCCAACTGT
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protein sequence of rna3805

>rna3805-protein ID=rna3805-protein|Name=rna3805|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MGMSTQGVVDGRILAQQSTPHIYLTHGALISHRGLPSSILAFVMVLFGGR
GGGAGRGAVSGPAPSSTLSDRFDRLHVKSTAAFTGGGRDVRRTQVQMTQQ
QKRNAAQAAFRGQTVQVVLPKQQLQRGGIRVGGRGVGGSRGVAGVASRAG
GGRGGVRGRGGRGAGRGRGGGRGRGRGAGRGGGRGGGKKVGKEDLDAEMD
EYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAKEKAAAGAGAGTATET
ERESIERGSKVSRGGSGIIPQEWLLPGVRTSKNDVPRPLLSL
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mRNA from alignment at CM002462.1:97739..98946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3805 ID=rna3805|Name=rna3805|organism=Nannochloropsis gaditana|type=mRNA|length=1208bp|location=Sequence derived from alignment at CM002462.1:97739..98946+ (Nannochloropsis gaditana)
TGTGTTTTGGCTGTGCCCCATGGGCATGTCGACGCAAGGTGTTGTGGACG
GTAGAATTCTCGCTCAACAATCGACTCCTCACATTTATCTGACACATGGC
GCGCTAATTTCGCACAGAGGCCTTCCCAGCAGCATCCTTGCGTTTGTCAT
GGTCCTCTTCGGTGGTCGCGGAGGTGGCGCCGGCCGCGGCGCTGTGTCAG
GTCCTGCTCCAAGGtatgttttccctcccttttcgaGGGGCTAGCGCCCC
TTGGAATACGCGTCATGTTGGACAGACCTCGACGCATCCTTCTCTTTAAA
AAGCTCAAGATGGAGGAGTGATCCTTTACCTGCCACGCACTGGAAACCAT
ATGCCGAACAACCCTCCGAACTCTTCGTTTCCTGGAAGACTTGTCACCGA
CGCCGTTACTCCCACCATCCACAGCTCTACCCTGTCGGACCGCTTCGACC
GACTGCACGTAAAATCTACGGCCGCTTTCACGGGCGGGGGACGGGACGTT
CGACGTACTCAGGTCCAGATGACGCAGCAGCAGAAACGGAATGCCGCTCA
AGCCGCATTTCGAGGTCAGACTGTTCAGGTGGTTTTACCCAAACAGCAGT
TACAACGGGGAGGAATAcgcgtgggggggaggggcgtgggcggGAGTCGA
GGCGTTGCAGGTGTCGCGAGccgagcgggaggagggcgtggcggggtacg
aggacgggggggccgcggggctgggcgagggagggggggagggcggggtc
gagggcgtggggcaggtcgaggaggaggaagggggggagggaagaaagtg
ggcaaggaggatttGGACGCGGAGATGGACGAGTATCATTtcaaggcggg
aaaaggaccgGACCCCAAGATCGCGCAGGCGGAGCGGAAAAAGGCGTCAT
TGGACACGGAGATGGACTCGTAttgggaggcaaaggaaaaAGCAGCGGCC
GGCGCGGGGGCTGGCACTGCCACGGAGACCGAGGTACAAAACGGCATGGA
GGCGTAAGGGCggctgcagggagggacgatgggtttgagggaggggcggt
ggggaggatgagagaaTGCGCCATGCCGTCAGCGGGAGAGCattgagaga
ggaagcaaggtgTCCCGTGGTGGGAGTGGAATTATACCACAGGAATGGTT
GCTACCTGGCGTGAGAACATCGAAGAATGATGTCCCGAGGCCCCTCTTGT
CGTTGTGA
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Coding sequence (CDS) from alignment at CM002462.1:97739..98946+

>rna3805 ID=rna3805|Name=rna3805|organism=Nannochloropsis gaditana|type=CDS|length=2637bp|location=Sequence derived from alignment at CM002462.1:97739..98946+ (Nannochloropsis gaditana)
ATGGGCATGTCGACGCAAGGTGTTGTGGACGGTAGAATTCTCGCTCAACA
ATCGACTCCTCACATTTATCTGACACATGGCGCGCTAATTTCGCACAGAG
GCCTTCCCAGCAGCATCCTTGCGTTTGTCATGGTCCTCTTCGGTGGTCGC
GGAGGTGGCGCCGGCCGCGGCGCTGTGTCAGGTCCTGCTCCAAGCTCTAC
CCTGTCGGACCGCTTCGACCGACTGCACGTAAAATCTACGGCCGCTTTCA
CGGGCGGGGGACGGGACGTTCGACGTACTCAGGTCCAGATGACGCAGCAG
CAGAAACGGAATGCCGCTCAAGCCGCATTTCGAGGTCAGACTGTTCAGGT
GGTTTTACCCAAACAGCAGTTACAACGGGGAGGAATAcgcgtggggggga
ggggcgtgggcggGAGTCGAGGCGTTGCAGGTGTCGCGAGccgagcggga
ggagggcgtggcggggtacgaggacgggggggccgcggggctgggcgagg
gagggggggagggcggggtcgagggcgtggggcaggtcgaggaggaggaa
gggggggagggaagaaagtgggcaaggaggatttGGACGCGGAGATGGAC
GAGTATCATTtcaaggcgggaaaaggaccgGACCCCAAGATCGCGCAGGC
GGAGCGGAAAAAGGCGTCATTGGACACGGAGATGGACTCGTAttgggagg
caaaggaaaaAGCAGCGGCCGGCGCGGGGGCTGGCACTGCCACGGAGACC
GAGCGGGAGAGCattgagagaggaagcaaggtgTCCCGTGGTGGGAGTGG
AATTATACCACAGGAATGGTTGCTACCTGGCGTGAGAACATCGAAGAATG
ATGTCCCGAGGCCCCTCTTGTCGTTGTGAATGGGCATGTCGACGCAAGGT
GTTGTGGACGGTAGAATTCTCGCTCAACAATCGACTCCTCACATTTATCT
GACACATGGCGCGCTAATTTCGCACAGAGGCCTTCCCAGCAGCATCCTTG
CGTTTGTCATGGTCCTCTTCGGTGGTCGCGGAGGTGGCGCCGGCCGCGGC
GCTGTGTCAGGTCCTGCTCCAAGCTCTACCCTGTCGGACCGCTTCGACCG
ACTGCACGTAAAATCTACGGCCGCTTTCACGGGCGGGGGACGGGACGTTC
GACGTACTCAGGTCCAGATGACGCAGCAGCAGAAACGGAATGCCGCTCAA
GCCGCATTTCGAGGTCAGACTGTTCAGGTGGTTTTACCCAAACAGCAGTT
ACAACGGGGAGGAATAcgcgtgggggggaggggcgtgggcggGAGTCGAG
GCGTTGCAGGTGTCGCGAGccgagcgggaggagggcgtggcggggtacga
ggacgggggggccgcggggctgggcgagggagggggggagggcggggtcg
agggcgtggggcaggtcgaggaggaggaagggggggagggaagaaagtgg
gcaaggaggatttGGACGCGGAGATGGACGAGTATCATTtcaaggcggga
aaaggaccgGACCCCAAGATCGCGCAGGCGGAGCGGAAAAAGGCGTCATT
GGACACGGAGATGGACTCGTAttgggaggcaaaggaaaaAGCAGCGGCCG
GCGCGGGGGCTGGCACTGCCACGGAGACCGAGCGGGAGAGCattgagaga
ggaagcaaggtgTCCCGTGGTGGGAGTGGAATTATACCACAGGAATGGTT
GCTACCTGGCGTGAGAACATCGAAGAATGATGTCCCGAGGCCCCTCTTGT
CGTTGTGAATGGGCATGTCGACGCAAGGTGTTGTGGACGGTAGAATTCTC
GCTCAACAATCGACTCCTCACATTTATCTGACACATGGCGCGCTAATTTC
GCACAGAGGCCTTCCCAGCAGCATCCTTGCGTTTGTCATGGTCCTCTTCG
GTGGTCGCGGAGGTGGCGCCGGCCGCGGCGCTGTGTCAGGTCCTGCTCCA
AGCTCTACCCTGTCGGACCGCTTCGACCGACTGCACGTAAAATCTACGGC
CGCTTTCACGGGCGGGGGACGGGACGTTCGACGTACTCAGGTCCAGATGA
CGCAGCAGCAGAAACGGAATGCCGCTCAAGCCGCATTTCGAGGTCAGACT
GTTCAGGTGGTTTTACCCAAACAGCAGTTACAACGGGGAGGAATAcgcgt
gggggggaggggcgtgggcggGAGTCGAGGCGTTGCAGGTGTCGCGAGcc
gagcgggaggagggcgtggcggggtacgaggacgggggggccgcggggct
gggcgagggagggggggagggcggggtcgagggcgtggggcaggtcgagg
aggaggaagggggggagggaagaaagtgggcaaggaggatttGGACGCGG
AGATGGACGAGTATCATTtcaaggcgggaaaaggaccgGACCCCAAGATC
GCGCAGGCGGAGCGGAAAAAGGCGTCATTGGACACGGAGATGGACTCGTA
ttgggaggcaaaggaaaaAGCAGCGGCCGGCGCGGGGGCTGGCACTGCCA
CGGAGACCGAGCGGGAGAGCattgagagaggaagcaaggtgTCCCGTGGT
GGGAGTGGAATTATACCACAGGAATGGTTGCTACCTGGCGTGAGAACATC
GAAGAATGATGTCCCGAGGCCCCTCTTGTCGTTGTGA
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Synonyms
Publications