EWM26881.1, cds3790 (CDS) Nannochloropsis gaditana

Overview
NameEWM26881.1
Unique Namecds3790
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:81821..83023 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26881.1
Producttransmembrane protein
Orig transcript idgnl|cribi|Naga_100596g3.4394.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:81821..83023 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
Homology
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|585108997|gb|EWM26881.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0
Query:    1 MEEPSHSQTGVNDDDNDLNNWPDGGDLHNVECQGNRNSINYTFFSRNLDAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASETGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDATERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLGPRACCVDGELRRQGGRGGGGGWEERTEEGRWKGTQERKLTMHVYVSGAEWPFGSDIKDKSSRSSV 400
            MEEPSHSQTGVNDDDNDLNNWPDGGDLHNVECQGNRNSINYTFFSRNLDAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASETGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDATERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLGPRACCVDGELRRQGGRGGGGGWEERTEEGRWKGTQERKLTMHVYVSGAEWPFGSDIKDKSSRSSV
Sbjct:    1 MEEPSHSQTGVNDDDNDLNNWPDGGDLHNVECQGNRNSINYTFFSRNLDAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASETGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDATERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLGPRACCVDGELRRQGGRGGGGGWEERTEEGRWKGTQERKLTMHVYVSGAEWPFGSDIKDKSSRSSV 400          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|585109702|gb|EWM27447.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 124.405 bits (311), Expect = 4.777e-28
Identity = 92/297 (30.98%), Postives = 133/297 (44.78%), Query Frame = 0
Query:   50 AVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASETGWVFAQKYFGVSTHYRMED-DGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFL---VPWLASRDACVHIFACDATERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLGPRACCVD 342
            A  + Q L + E NVQ A+R +Q L  D RL LA  L  K+ +F   T  G     TG                   P  +     MA  +   RLE L RRV  C +A     SE  W  A    G+ T  R ++ D TL  R   ++E+C V  +LAVLREAD Y  W P +  S +V+ +GK E ++WF+     +P++  RDA +H++ CDA+E  +++L G SI E E     G                         + P    WN AR++++    Q+ +L P    +D
Sbjct:   40 AANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAF---TRTG-----TG-------------------PQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSE-DWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFV--RDAVLHLYGCDASEEDLIILSGASIPEDEITESMG-------------------------VRPPKKKWNHARVDIKYFSIQLRILSPTHTKID 281          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|673042339|ref|XP_008875130.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574469323|gb|ETV96338.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 122.094 bits (305), Expect = 2.130e-26
Identity = 90/290 (31.03%), Postives = 132/290 (45.52%), Query Frame = 0
Query:   49 DAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASE--TGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDAT-ERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLG 335
            D + D  ++ +T+ NV+  + ++Q LV DERL  A  L+ KL+ FL       A   T L                     D + + +A   TR  L+ +  R +    AL  F ++   GW F Q YFG+STH++  DDGT+ ++L    E   VF  +AV+RE DL+ LWAPF   S+L+  + + E++ +    +P L  RDA +H F  +A  E   +LL GQS                           L D  P    PP+  GWN+ RM +R     IE  G
Sbjct:  549 DVLPDYSNVVVTQDNVEWVWAHVQMLVSDERLFSAADLYDKLVGFLDTAPRVKATVATVL---------------------DKIEREIAAQATR--LQQVKARRDQGNAALHEFNADEAAGWQFGQTYFGISTHWKPGDDGTVWLKLDGICEGVDVFHAMAVIRETDLFYLWAPFCNKSTLLAGLSRVEILTYVNIAIP-LMQRDAVIHAFGINAVYEHRCVLLLGQSA--------------------------LQDDHPTSRFPPI-KGWNADRMHIRAFRALIEPYG 787          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|1173946362|gb|OQR94905.1| (transmembrane protein, partial [Thraustotheca clavata])

HSP 1 Score: 121.324 bits (303), Expect = 3.749e-26
Identity = 94/299 (31.44%), Postives = 138/299 (46.15%), Query Frame = 0
Query:   49 DAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFA--SETGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDAT-ERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLG---PRACCV 341
            + + D  H+ +   NVQ  + ++Q L+ +ERL  A  L  KL  FL        +P  G  +C+        ++S  +   +  R AM H                  +AL  F   ++ GW FAQ YFGVSTH++  DDGT+ ++L    E   +F+ LAV+RE DL+ LWAPF   S L+  +G+ EL+ +    +P L  RDA VH F  +AT E   ++L G+SI E +                          +  L  PP+  GWN+ RM++R     IE  G    R C V
Sbjct:  423 ETLVDYSHVVVGLENVQWVWTHIQYLINEERLFSAAPLIEKLEQFL--------SPRLGNRQCADINQLVQGKLSELSQVKE--RSAMGH------------------QALHEFNLDADAGWRFAQTYFGVSTHWKPGDDGTIWLKLDGICEGVDIFNALAVIRETDLFHLWAPFCNRSELLANLGRVELIAYMSLAIP-LMQRDAIVHAFGINATYEHRCIVLLGKSITEDQC------------------------PVNNLEFPPI-KGWNADRMDLRAFRALIEPYGRNRARTCIV 667          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|673042337|ref|XP_008875129.1| (hypothetical protein H310_10499 [Aphanomyces invadans] >gi|574469322|gb|ETV96337.1| hypothetical protein H310_10499 [Aphanomyces invadans])

HSP 1 Score: 120.553 bits (301), Expect = 7.670e-26
Identity = 91/299 (30.43%), Postives = 135/299 (45.15%), Query Frame = 0
Query:   49 DAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASE--TGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDAT-ERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLG---PRACCV 341
            D + D  ++ +T+ NV+  + ++Q LV DERL  A  L+ KL+ FL       A   T L                     D + + +A   TR  L+ +  R +    AL  F ++   GW F Q YFG+STH++  DDGT+ ++L    E   VF  +AV+RE DL+ LWAPF   S+L+  + + E++ +    +P L  RDA +H F  +A  E   +LL GQS  + +    R                           PP+  GWN+ RM +R     IE  G    R C V
Sbjct:  549 DVLPDYSNVVVTQDNVEWVWAHVQMLVSDERLFSAADLYDKLVGFLDTAPRVKATVATVL---------------------DKIEREIAAQATR--LQQVKARRDQGNAALHEFNADEAAGWQFGQTYFGISTHWKPGDDGTVWLKLDGICEGVDVFHAMAVIRETDLFYLWAPFCNKSTLLAGLSRVEILTYVNIAIP-LMQRDAVIHAFGINAVYEHRCVLLLGQSALQDDHPTSR--------------------------FPPI-KGWNADRMHIRAFRALIEPYGRNRNRTCIV 796          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|1173950290|gb|OQR98263.1| (transmembrane protein [Achlya hypogyna])

HSP 1 Score: 117.857 bits (294), Expect = 6.029e-25
Identity = 94/302 (31.13%), Postives = 139/302 (46.03%), Query Frame = 0
Query:   49 DAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLD---RRVNACVEALDLFASET--GWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDAT-ERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLGP---RACCV 341
            + + D  H+ +   N Q  + ++Q L+ +ERL  A  L  KL  FL                         +R+  P         A  H Q +A+L +L+    R    ++AL  F ++   GW FAQ YFGVSTH++  +D T+ ++L    E   +F+ LAV+RE DL+ LWAPF   S L+  +G+ EL+ +    +P L  RDA VH F  +AT E   ++L G+SI E                    E+ P    +  L  PP+  GWN+ RME+R     +E  G    R C V
Sbjct:  519 ETLMDYGHVAVNLDNAQWVWTHIQFLINEERLFSAAPLIEKLEQFLA------------------------ARLDTPA-------CAAIHAQLQAKLPALELVKERAVQGLQALHEFNADADAGWRFAQTYFGVSTHWKPGNDATIWLKLDGICEGVDIFNALAVVRETDLFNLWAPFCNKSELLANLGRVELITYLSVAIP-LMQRDAVVHAFGINATYEHRCVVLLGKSITE--------------------EQSP----VNNLEFPPV-KGWNADRMELRAFRALVEPYGRNRGRTCIV 763          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|698790930|ref|XP_009828497.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574116276|gb|ETV81760.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 113.62 bits (283), Expect = 1.758e-23
Identity = 91/299 (30.43%), Postives = 134/299 (44.82%), Query Frame = 0
Query:   49 DAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASE--TGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDAT-ERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLG---PRACCV 341
            D + D  H+ +T  NV+  + ++Q L+ DERL  A  L  KL +F+ +      AP    S+ +  +              D +   MA     ARL  +  R +    AL  F ++   GW F Q YFGVSTH++  DDGT+ ++L    E   VF+ +AV+RE DL+ LWAP    S+L+  + + E++ +    +P L  RDA +H F  +A  E   +LL GQS  + +                    VP           P   GWN+ RM +R     IE  G    R C V
Sbjct:  551 DVLPDYTHIKVTMANVEWVWAHVQMLMSDERLFSAAELADKLHAFVQM------APRPPGSKAADTL--------------DKIDGEMA--AQDARLRQVTTRRDLGNAALHEFNADEAAGWRFGQTYFGVSTHWKPGDDGTVWLKLDGICEGVDVFNAMAVIRETDLFALWAPCCNKSALLASLSRVEILTYASIAIP-LMQRDAVIHAFGINAVYEHRCVLLLGQSATQEDH-----------------PTVPF----------PAVKGWNADRMHIRAFRALIEPYGRNRNRTCIV 799          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|397563876|gb|EJK43974.1| (hypothetical protein THAOC_37531, partial [Thalassiosira oceanica])

HSP 1 Score: 112.849 bits (281), Expect = 2.699e-23
Identity = 68/197 (34.52%), Postives = 98/197 (49.75%), Query Frame = 0
Query:  166 TGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLA-SRDACVHIFACDA-TERGVLLLCGQSIREGE----------GKGGRGEG-------------RGKEGGAGGMEKVPLFDAI-PGLNIPPLASGWNSARMEVRKCWCQIELLGP 336
            TGWV AQ  FGVSTHYR E DG+L++R+  DL    +F++LA+LRE DLY  WAPF  +S  + ++G+ ++  W+   VP    SRDAC     CD   E G +++    + + +          GK  R  G              G E   G +      D I   L +PP+ SG    RM +R    ++++LGP
Sbjct:  115 TGWVHAQTLFGVSTHYRRESDGSLSIRIAGDLVGVPLFEQLAILREVDLYHAWAPFCVSSRKLAQLGRLDVAAWYDVGVPIFGLSRDACYRAVGCDGMAEDGSVMIVAVGLNDTDEHGVVSSASLGKQTRKRGPSPPAAASDDDDAEGLEATEGSLLSSLARDEILSTLEMPPVPSGAGRGRMTIRNFSAKVDVLGP 311          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|698790928|ref|XP_009828496.1| (hypothetical protein H257_05351 [Aphanomyces astaci] >gi|574116275|gb|ETV81759.1| hypothetical protein H257_05351 [Aphanomyces astaci])

HSP 1 Score: 112.464 bits (280), Expect = 3.968e-23
Identity = 91/299 (30.43%), Postives = 134/299 (44.82%), Query Frame = 0
Query:   49 DAVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASE--TGWVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDAT-ERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLG---PRACCV 341
            D + D  H+ +T  NV+  + ++Q L+ DERL  A  L  KL +F+ +      AP    S+ +  +              D +   MA     ARL  +  R +    AL  F ++   GW F Q YFGVSTH++  DDGT+ ++L    E   VF+ +AV+RE DL+ LWAP    S+L+  + + E++ +    +P L  RDA +H F  +A  E   +LL GQS  + +                    VP           P   GWN+ RM +R     IE  G    R C V
Sbjct:  551 DVLPDYTHIKVTMANVEWVWAHVQMLMSDERLFSAAELADKLHAFVQM------APRPPGSKAADTL--------------DKIDGEMA--AQDARLRQVTTRRDLGNAALHEFNADEAAGWRFGQTYFGVSTHWKPGDDGTVWLKLDGICEGVDVFNAMAVIRETDLFALWAPCCNKSALLASLSRVEILTYASIAIP-LMQRDAVIHAFGINAVYEHRCVLLLGQSATQEDH-----------------PTVPF----------PAVKGWNADRMHIRAFRALIEPYGRNRNRTCIV 799          
BLAST of EWM26881.1 vs. NCBI_GenBank
Match: gi|325188207|emb|CCA22748.1| (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 112.464 bits (280), Expect = 4.662e-23
Identity = 96/336 (28.57%), Postives = 151/336 (44.94%), Query Frame = 0
Query:   15 DNDLNNWPDGGDLHNVECQGNRNSINYTFFSRNLDA---VADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASETG--WVFAQKYFGVSTHYRMEDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFLVPWLASRDACVHIFACDA-TERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEV---RKCWCQIELLGPRACCV 341
            ++ L + P   D HN+  Q +R+  N    S  L+A   + D   + +T  N + A++++Q L  +ERL  A  L  ++ S++         P+  L+                    +SV+ AM   +    L+ + +R     +AL  F ++ G  W FAQ Y GVST ++  D+GT+ +++   +E   +F+ LAV+RE DLY  WAPF   S ++ ++G+CEL+ +F   +P L  RDA +H F  +A  E   +LL G                  E     M  VP               GWNS R+ +   R     IE L  RAC V
Sbjct:  593 NDTLGSIPSTIDKHNIHSQMHRDE-NEQPISDELNATECLLDYSDIVITAKNFEWAWKHIQLLRIEERLFSATLLLDRMESYIS------KLPDENLNL------------------IESVQTAMK--EEEGALKQIRKRTQCASQALHDFNNDEGADWQFAQSYLGVSTFWKPGDNGTIWLKMDGIIEGADIFNTLAVIREIDLYRHWAPFCNNSEILSDIGRCELLAYFCLSLP-LTPRDAVLHAFGVNACYEHRCVLLLG------------------ETPDSSMIDVPKM------------KGWNSDRIHIHGFRALIEPIEKLTTRACIV 870          
The following BLAST results are available for this feature:
BLAST of EWM26881.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108997|gb|EWM26881.1|0.000e+0100.00transmembrane protein [Nannochloropsis gaditana][more]
gi|585109702|gb|EWM27447.1|4.777e-2830.98transmembrane protein [Nannochloropsis gaditana][more]
gi|673042339|ref|XP_008875130.1|2.130e-2631.03hypothetical protein, variant [Aphanomyces invadan... [more]
gi|1173946362|gb|OQR94905.1|3.749e-2631.44transmembrane protein, partial [Thraustotheca clav... [more]
gi|673042337|ref|XP_008875129.1|7.670e-2630.43hypothetical protein H310_10499 [Aphanomyces invad... [more]
gi|1173950290|gb|OQR98263.1|6.029e-2531.13transmembrane protein [Achlya hypogyna][more]
gi|698790930|ref|XP_009828497.1|1.758e-2330.43hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|397563876|gb|EJK43974.1|2.699e-2334.52hypothetical protein THAOC_37531, partial [Thalass... [more]
gi|698790928|ref|XP_009828496.1|3.968e-2330.43hypothetical protein H257_05351 [Aphanomyces astac... [more]
gi|325188207|emb|CCA22748.1|4.662e-2328.57transmembrane protein putative [Albugo laibachii N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3799rna3799Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications