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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100690g1.447.mrna |
| Orig protein id | gnl|cribi|Naga_100690g1.447 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:66232..68258 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3792 ID=rna3792|Name=rna3792|organism=Nannochloropsis gaditana|type=mRNA|length=1814bp
TCATGCAGCTCTTCGGGCTGCTCAATTCCCTCCTTCGCCACCACCCGGCC
ACCAGCCGCAACAACCTGCACATTACTCGCTACAACGTCATGCCCCTCTC
TGCGAACAGCGGCATCATCGGCTGGGTCAAAAACTGCGACACGATTCATC
AACTGGTTAAGGATTACAGGGAGTCACGCCACGTGCGTCTCGACATCGAA
CGTCGTCTCCTCGCACAAACAGCCCCTGACTATGATAAACTTCCCTTACT
TCAAAAAGTGGAGGTGTTTAGGGAGGTGATGCTACAGACTCGAGGGATGG
AGGTAGCCAAGATGCTGTGGCTCAAATCCAGCAATTCTGAAATCTGGCTG
GAGCGACGCAACAATTTTACCCGATCGCTGGCCGTTATGTCTATGGCCGG
CTATATCCTCGGCCTGGGAGACAGGCACCCCTCCAACCTGATGGTCGACC
GAACCACCGGGCGCGTCGTGCACATCGACTTTGGCGATTGCTTTGAGGTG
TCGATAACCCGGTCTGCCTACCCGGAAACCGTCCCCTTCCGTCTCACCAG
GATGCTCATCAACGCCATGGAGGGTGGGGGCATCGAAGGGAGCTTCCGTC
TCACATGCGAGAACGTGCTCGAAGTCCTGAGGAACAACCGCGAATCCCTC
ATGGCCATGCTCGAAGCCTTTGTCCACGACCCCCTCATCACCTGGCGCCT
CCTCCCGACCGAGGCCGTGGATGCCCCCTCCGTCCCCGCCTCCGACCCCG
CCTTGCCCCCGTCCATCGAGGAGGAAGCGCAAGCACAGGAAAGAGAAGAA
AAGCAGGGCCTCCCCACCAGGGCTTCTCGCGTGCATCTTCCTGCCCTCGG
CACCTCCCTGGCCGTGATCCACGAAGAAGGGGAAATGGAACAGGCCTCAA
CCTGTCACAGCCCCGTCCAGCCCTGCACTACCCCGTCGTCCGTCGCCAAA
GCCTCCCGAAAGAGGACGTTGTCCAGCAAAAGCCACCAGCATCGACGGCA
AAACAGTCGGAACGTTCTGATGATCGTCCAGCTCTTTTCCGGGGAGACAG
AGAGCACAGGGGAGATGAATGGGGGGAGTATGGGCCACGGCAGTCCCGCA
GGCGGGCATCCGCATTCTTCCACCGGCCTGAGCAGTGCGGCCGGGACAAT
CGCCTCCCTCCATGCATCCGGACGACACCAGGCTTCCCCTTCTCCCCTTT
GTTTCCACAAGGAAGCAGGAATCTTGAGCGCGCCAGCCTCCTCTTCGGAC
GCCGCGTTCTCACCCACGGACGGGCAAACGCCCACAGAGGAGATTGAGCT
CAATCAGCGGGCACTGGCCATCATGGAACGTATTCAGCAGAAGCTCCTGG
GGAGGGACTATCCGTCACTTTCTTACTTGCATTTATCTGGGAACGGGCTG
GAGTCTATGCCTCCGGAGACCCGCGGCGGAGGGGAGGGACTGGGGAAGGA
GGAGGATCTGGCGTCGTCGGCCTCTCTGTCCTCCTCTATGGTGGGTGTGG
CCCGGGTGCACTTGTCGGTCGAGGAGCAAGTGGACCGACTGATCAAGGAG
GCGACCTCCGTGGAGAATCTCTGTCGCTTGTTCATGGGCTGGTGCCCTTT
TTGGTAGTTCAATGGGGGGATATACTATGTTTATGTATATATATTCAGGA
CGGCAAGCGGTCACATTGGGGAAGAATGTCATTGGACATGTACAGTGATA
GTTTGCAGTATCATGCGAAGCGAAAAGTAAGCCGTTGGTATATGCTGTAA
AAGATGAGGACTACTGTGCATCGGTTATAAAACCAAATTACATTTCTAAC
AAGCTGCTTTTTTT back to topprotein sequence of rna3792 >rna3792-protein ID=rna3792-protein|Name=rna3792|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MKIPELQLLGDVLAFLKSKGFVKTAATLIKEGKGKGALSLSTGSRDLLDL
YVKAVGVVPRPETPSSSSDDDSDSSSSSESEEKGEARKRDVKGPITPALK
KRQAAAALTTPAAASSSSSSSSSSSSSSSSSSESENEEDRKSHKELSEKQ
NTPSQMNGTAKGASSSSSSSSEEEEEEEAETTIPTKKLSNTAHSTRLRPA
SKPLPSKTEASSSSSSSSSSSGESSSESESASEEEEKAAAPATKKSLPSH
KRKAADMSSSSSSDSSSNEEEEEEGKEEEEERKRKNSPPAKGGKWRVLRR
I back to topmRNA from alignment at CM002462.1:66232..68258+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3792 ID=rna3792|Name=rna3792|organism=Nannochloropsis gaditana|type=mRNA|length=2027bp|location=Sequence derived from alignment at CM002462.1:66232..68258+ (Nannochloropsis gaditana)
GCACAACCCAGGATGATTCGACGCGTACCATGTTACACTGAATAGCATAA
AATAGATTGTGTGGTCGCGTTGGCATGGATTTCATGGGTGTTTTTACTCG
TTGCCGCCCTTCTAGGACACGCTTTCAGTCGCATTGGGCAAGCAGTATCT
TGTGACCAACGAAGGACTAAGAGCATGAAAATACCGGAGTTGCAGCTGCT
GGGTGACGTCCTGGCTTTTTTGAAGGTACGTGAAAGCCTTCAGGAACGAG
CACACGTGTGAAAACCAGGCCTGCACACGATGTGGGCGACGATTCAAAGG
GTGGATGCCGCTAGTTTCCTCTCAcggccccctctttcctccccatgaTA
TACCcaactcccccccccgcctcagTCCAAGGGGTTTGTAAAGACGGCCG
CTACTTtgatcaaggaggggaagggaaaaggggcgtTGTCGTTGTCGACA
GGGTCGCGTGATTTACTGGACCTGTACGTGAAGGCCGTGGGGGTTGTCCC
GCGGCCGGAAACgccatcgtcgtcgtcggaCGATGATAgtgacagcagca
gcagcagtgaaagtgaggagaagggtgaAGCTAGGAAAAGGGACGTAAAA
GGGCCTATCACGCCGGCCCTGAAGAAGAGACAGGCTGCCGCGGCGTTGAC
GACTCcagctgccgcctcctcctcgtcctcctcctcttcgtcctcctcct
cctcctcgtcttcgtcctccgaaAGTGAAAACGAAGAGGACCGAAAGAGC
CATAAAGAGCTGTCTGAGAAGCAAAACACTCCATCCCAGATGAACGGCAC
CGCGAAGggcgcctcttcttcctcgtcttcctcaagcgaggaggaggaag
aagaggaagctgagACAACCATTCCGACGAAGAAGCTTTCAAACACCGCG
CACTCTACCCGTCTTCGCCCCGCTTCTaaacctcttccttccaaaactga
ggcctcctcctcctcctcctcctcctcctcctcttcaggaGAGTCGTCGA
GCGAGAGTGAGAgtgcgagcgaggaggaggagaaggcagctGCTCCAGCA
ACCAAGAAATCATTGCCCTCCCACAAGCGAAAAGCGGCGGacatgtcttc
ctcctcctcctctgactCCTCCAgtaacgaggaggaggaggaggagggga
aggaagaggaggaggaaaggaagagaaagaattccccccccgcaaaagga
ggaaagtggagggtACTGAGACGCATTTAAATGGAAAGCACCCGAAAAGC
AGCGACAGCGACAACAGTAGCGACAGCAACAGTGACAGTGAGAGCAGCGA
CGACAgtgacagcagcagcgaaaGGTCAGCAAcattttctcccccccgtc
ttgcctctttctttccctccttccctccctccctctttcatcccttcccc
tcctcccactcccttcccttcagcgagagcgaggacgaggacgcggtcgC
TGCCCGGAAGGAAGCGGCAGAAACGGAGAGACGGCGCAAGTCGGTGGagg
ccgccctcgcctgGCAAACcgcgcaggaggaaaaaatgaaggcggggacg
ggcgcAAGTCCAAGCACCTTAACACCcaaaaagggcgggaaagaagggcg
ccGGGTATCCGGGGAGGCGTTTCGGCGCGTGGACGACGAGTACTGGGGGC
AGCAGATCAAGGACGATCGACTCAAGGACAATTCATGtgagggcaggcgg
gagggagggagggagggaggaaggtagggagggaaggaggagagcttgTA
CTTGAAGGCATGGGACTGATGCGTCGTCCTTTTCTGTCTATAtcctgtcg
ccctccctcgttctcctctccttgcctcccgcaGACGCCGGGACCTTCGG
GAGCGGCGGGTACGGGGCCAAGGCAAGCGAGAAGCTGATGACGGTCCGAG
GGAAGGATTTCCGGCacgagaagacgaagaagaagcgggggagcTACAGG
GGGGGGACGATTTCCTTGGAGAGTCACTCGATCAAGTACGACTACGGCTC
GGACGtgtagaagggagggacggaggg back to topCoding sequence (CDS) from alignment at CM002462.1:66232..68258+ >rna3792 ID=rna3792|Name=rna3792|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at CM002462.1:66232..68258+ (Nannochloropsis gaditana)
ATGAAAATACCGGAGTTGCAGCTGCTGGGTGACGTCCTGGCTTTTTTGAA
GTCCAAGGGGTTTGTAAAGACGGCCGCTACTTtgatcaaggaggggaagg
gaaaaggggcgtTGTCGTTGTCGACAGGGTCGCGTGATTTACTGGACCTG
TACGTGAAGGCCGTGGGGGTTGTCCCGCGGCCGGAAACgccatcgtcgtc
gtcggaCGATGATAgtgacagcagcagcagcagtgaaagtgaggagaagg
gtgaAGCTAGGAAAAGGGACGTAAAAGGGCCTATCACGCCGGCCCTGAAG
AAGAGACAGGCTGCCGCGGCGTTGACGACTCcagctgccgcctcctcctc
gtcctcctcctcttcgtcctcctcctcctcctcgtcttcgtcctccgaaA
GTGAAAACGAAGAGGACCGAAAGAGCCATAAAGAGCTGTCTGAGAAGCAA
AACACTCCATCCCAGATGAACGGCACCGCGAAGggcgcctcttcttcctc
gtcttcctcaagcgaggaggaggaagaagaggaagctgagACAACCATTC
CGACGAAGAAGCTTTCAAACACCGCGCACTCTACCCGTCTTCGCCCCGCT
TCTaaacctcttccttccaaaactgaggcctcctcctcctcctcctcctc
ctcctcctcttcaggaGAGTCGTCGAGCGAGAGTGAGAgtgcgagcgagg
aggaggagaaggcagctGCTCCAGCAACCAAGAAATCATTGCCCTCCCAC
AAGCGAAAAGCGGCGGacatgtcttcctcctcctcctctgactCCTCCAg
taacgaggaggaggaggaggaggggaaggaagaggaggaggaaaggaaga
gaaagaattccccccccgcaaaaggaggaaagtggagggtACTGAGACGC
ATTTAAATGAAAATACCGGAGTTGCAGCTGCTGGGTGACGTCCTGGCTTT
TTTGAAGTCCAAGGGGTTTGTAAAGACGGCCGCTACTTtgatcaaggagg
ggaagggaaaaggggcgtTGTCGTTGTCGACAGGGTCGCGTGATTTACTG
GACCTGTACGTGAAGGCCGTGGGGGTTGTCCCGCGGCCGGAAACgccatc
gtcgtcgtcggaCGATGATAgtgacagcagcagcagcagtgaaagtgagg
agaagggtgaAGCTAGGAAAAGGGACGTAAAAGGGCCTATCACGCCGGCC
CTGAAGAAGAGACAGGCTGCCGCGGCGTTGACGACTCcagctgccgcctc
ctcctcgtcctcctcctcttcgtcctcctcctcctcctcgtcttcgtcct
ccgaaAGTGAAAACGAAGAGGACCGAAAGAGCCATAAAGAGCTGTCTGAG
AAGCAAAACACTCCATCCCAGATGAACGGCACCGCGAAGggcgcctcttc
ttcctcgtcttcctcaagcgaggaggaggaagaagaggaagctgagACAA
CCATTCCGACGAAGAAGCTTTCAAACACCGCGCACTCTACCCGTCTTCGC
CCCGCTTCTaaacctcttccttccaaaactgaggcctcctcctcctcctc
ctcctcctcctcctcttcaggaGAGTCGTCGAGCGAGAGTGAGAgtgcga
gcgaggaggaggagaaggcagctGCTCCAGCAACCAAGAAATCATTGCCC
TCCCACAAGCGAAAAGCGGCGGacatgtcttcctcctcctcctctgactC
CTCCAgtaacgaggaggaggaggaggaggggaaggaagaggaggaggaaa
ggaagagaaagaattccccccccgcaaaaggaggaaagtggagggtACTG
AGACGCATTTAA back to top
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