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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100103g12.7037.mrna |
| Orig protein id | gnl|cribi|Naga_100103g12.7037 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:17148..18945 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3776 ID=rna3776|Name=rna3776|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp
ATTCACAGAGGCAATCGTTGTTTGGGATTTTTTGGTGGCTATTCATTGAG
AGGTCATGCCTCCGCCGTCGCCTCGAGATCTTCGTCCTCGATCAGACAGT
CACGACACGCAGGACACAGGGGATGCCGAGCTGGGAGAGATTAATATTCC
CGACTCGACGGACGCCAGCGTTCCCCGTAGTTTTATTCGGAAAAAAGACA
AATTAAGTACGAGTAACACGAGCATATCTTCCAGTAATTCTACTCGACGA
TGTAATTCAGAATGGCACTCCGCTGTATCCAGCCACGACGGGGAGGACCT
GAAGCCACCGGGGACACCATCACAGATACATCTCATGTCCTCCATGCATT
CTCAGGTGGTGAATGTTGTTCACCATGTTCAAGACTATCTCCATCACATG
TAAGCAGACTGTTTGAGAGAAAGGCGGGAATTTTCGATAGATGTCTTTAT
CCCTCCTCACTTCCCAGAGTTACGTGCCGGCGCTTTGTTTTTGGGTTGCA
ATCACGTGTTTCTTGGGATAGTAGTTTTACCAGATGAGCGGACCTCGCAT
TTGTTTTTTGCAGAGTGCCATGTCATGCCGCCTGTCACGCCCATCTTTTC
CAGAGCTCTCACCTTTTTCCTTGTCTGTTCCTCCTTCCACAGGCCCAAGT
GGCAATACCGCCTGCTTTTATGCACTGTCATCATCCTTTTTGTCTCCCTC
GTCCTGGTCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTGCC
ACACATACGAGTGACGAACGTCCGTCTCGCCCTCCCCCCACCACACGTGG
ACTCTGCCGGCCACATTCCCATCGTCTCCACCATCCTCTTCTCCAATCCC
AACTCCTTCTTCACCACCTCCAGCCTCTCGCCTATACGCATCTACGCCCT
CCCCTCCCGCTCCCCCGAGAGCCTGCTGGCCCTCACCGCGCCTCGGACCA
TCCGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCACC
TTGAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCGGT
TTTGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGGCT
TAGGGCCGAGGCTGGAGATGCATGCGTGGGTGGGAAAGAGGGGGCGGAAA
GCGTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGGGC
CAAAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGAAGGG
CTTGGGACTCATTCCTACCAGCCGGAATTTCAAGGTGGAATGCACGGTGC
TAAGAAAGTGGGGCGAGAACCCCCTGACCCTCAGCGATTGCTACGGGCGC
TTTTACAAGGGATAGTCCAGGTTCGAAGGGGCGAGGATATGGTCTGGATA
GAGTAGTGAGGCAGTAAATTAAAGCGAGTTGGAACTTTTGAAGTGGCAAC
CGAGAGGGTTGTCAGGAAGGGAGGCGGAGGGCGGTCGACGACGACAAGTT
TTGAGTTGTGCTCCGAGGAGGCTCTCGTGTATAGGAGGGACTTCAGCCGG
GACGTGCAGGCCCGGAGGAGCCACTGAAATTTGCGAAATTAACAAATTTT
TCCGATGTGTGTAGGTGAGAAAAAAAGAATAATCTTTGCGTAATTGCATG back to topprotein sequence of rna3776 >rna3776-protein ID=rna3776-protein|Name=rna3776|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKL
STSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQ
VVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMAL
PHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYA
LPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAA
VLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHR
AKIVCSTRQVLVKSP back to topmRNA from alignment at CM002462.1:17148..18945+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3776 ID=rna3776|Name=rna3776|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at CM002462.1:17148..18945+ (Nannochloropsis gaditana)
ATTCACAGAGGCAATCGTTGTTTGGGATTTTTTGGTGGCTATTCATTGAG
AGGTCATGCCTCCGCCGTCGCCTCGAGATCTTCGTCCTCGATCAGACAGT
CACGACACGCAGGACACAGGGGATGCCGAGCTGGGAGAGATTAATATTCC
CGACTCGACGGACGCCAGCGTTCCCCGTAGTTTTATTCGGAAAAAAGACA
AATTAAGTACGAGTAACACGAGCATATCTTCCAGTAATTCTACTCGACGA
TGTAATTCAGAATGGCACTCCGCTGTATCCAGccacgacggggaggacct
GAAGCCACCGGGGACACCATCACAGATACATCTCATGTCCTCCATGCATT
CTCAGGTGGTGAATGTTGTTCACCATGTTCAAGACTATCTCCATCACATG
TAAGCAGACTGTTTgagagaaaggcgggaatTTTCGATAGATGTCTTTAT
CCCTCCTCACTTCCCAGAGTTACGTGCCGGCGCTTTGTTTTTGGGTTGCA
ATCACGTGTTTCTTGGGATAGTAGTTTTACCAGATGAGCGGACCTCGCAT
TTGTTTTTTGCAGAGTGCCATGTCATGCCGCCTGTCACGCCCATCTTTTC
CAGAGCTCTCACCTTTTTCCTTGtctgttcctccttccacaggcCCAAGT
GGCAATACCGCCTGCTTTTATGCACTGTCATCATCCTttttgtctccctc
gtcctggtCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTGCC
ACACATACGAGTGGTAAAGATGAGGGCGTtatgggaggggaaagggaggt
atAGGGCACCAAACTTACCGCCCTGGGGCAAATGCTCATTCGCAGAGGGG
ACATTCCAGAAAAATAAGATGACAGACAAgcacttcctctctctttttcc
tatCCCCCCAGACGAACGTccgtctcgccctccccccaccacACGTGGAC
TCTGCCGGCCACATTCCCATcgtctccaccatcctcttctccaatcccaa
ctccttcttcaccacctccagcctCTCGCCTATACGCAtctacgccctcc
cctcccgctcccccgaGAGCCTGCTGGCCCTCACCGCGCCTCGGACCATC
CGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCACCTT
GAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCGGTTT
TGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGGCTTA
GGGCCGAGGCTGGAGATGCATgcgtgggtgggaaagagggggcggaaagC
GTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGGGCCA
AAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGAAGGGCT
TGGGACTCATTCCTACCAGCCGGAATTTCAAGGTGGAATGCACGGTGCTA
AGAAAGTGGGGCGAGAACCCCCTGACCCTCAGCGATTGCTACGGGCGCTT
TTACAAGGGATAGTCCAGGTTCGAAGGGGCGAGGATATGGTCTGGATAGA
GTAGTGAGGCAGTAAATTAAAGCGAGTTGGAACTTTTGAAGTGGCAACCG
AGAGGGTTgtcaggaagggaggcggagggcggtcgACGACGACAAGTTTT
GAGTTGTGCTCCGAGGAGGCTCTCGTGTATAGGAGGGACTTCAGCCGGGA
CGTGCAGGCCCGGAGGAGCCACTGAAATTTGCGAAATTAACAAATTTTTC
CGATGTGTGTAGgtgagaaaaaaagaataatCTTTGCGTAATTGCATG back to topCoding sequence (CDS) from alignment at CM002462.1:17148..18945+ >rna3776 ID=rna3776|Name=rna3776|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at CM002462.1:17148..18945+ (Nannochloropsis gaditana)
ATGCCTCCGCCGTCGCCTCGAGATCTTCGTCCTCGATCAGACAGTCACGA
CACGCAGGACACAGGGGATGCCGAGCTGGGAGAGATTAATATTCCCGACT
CGACGGACGCCAGCGTTCCCCGTAGTTTTATTCGGAAAAAAGACAAATTA
AGTACGAGTAACACGAGCATATCTTCCAGTAATTCTACTCGACGATGTAA
TTCAGAATGGCACTCCGCTGTATCCAGccacgacggggaggacctGAAGC
CACCGGGGACACCATCACAGATACATCTCATGTCCTCCATGCATTCTCAG
GTGGTGAATGTTGTTCACCATGTTCAAGACTATCTCCATCACATgcCCAA
GTGGCAATACCGCCTGCTTTTATGCACTGTCATCATCCTttttgtctccc
tcgtcctggtCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTG
CCACACATACGAGTGACGAACGTccgtctcgccctccccccaccacACGT
GGACTCTGCCGGCCACATTCCCATcgtctccaccatcctcttctccaatc
ccaactccttcttcaccacctccagcctCTCGCCTATACGCAtctacgcc
ctcccctcccgctcccccgaGAGCCTGCTGGCCCTCACCGCGCCTCGGAC
CATCCGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCA
CCTTGAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCG
GTTTTGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGG
CTTAGGGCCGAGGCTGGAGATGCATgcgtgggtgggaaagagggggcgga
aagCGTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGG
GCCAAAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGAAT
GCCTCCGCCGTCGCCTCGAGATCTTCGTCCTCGATCAGACAGTCACGACA
CGCAGGACACAGGGGATGCCGAGCTGGGAGAGATTAATATTCCCGACTCG
ACGGACGCCAGCGTTCCCCGTAGTTTTATTCGGAAAAAAGACAAATTAAG
TACGAGTAACACGAGCATATCTTCCAGTAATTCTACTCGACGATGTAATT
CAGAATGGCACTCCGCTGTATCCAGccacgacggggaggacctGAAGCCA
CCGGGGACACCATCACAGATACATCTCATGTCCTCCATGCATTCTCAGGT
GGTGAATGTTGTTCACCATGTTCAAGACTATCTCCATCACATgcCCAAGT
GGCAATACCGCCTGCTTTTATGCACTGTCATCATCCTttttgtctccctc
gtcctggtCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTGCC
ACACATACGAGTGACGAACGTccgtctcgccctccccccaccacACGTGG
ACTCTGCCGGCCACATTCCCATcgtctccaccatcctcttctccaatccc
aactccttcttcaccacctccagcctCTCGCCTATACGCAtctacgccct
cccctcccgctcccccgaGAGCCTGCTGGCCCTCACCGCGCCTCGGACCA
TCCGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCACC
TTGAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCGGT
TTTGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGGCT
TAGGGCCGAGGCTGGAGATGCATgcgtgggtgggaaagagggggcggaaa
gCGTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGGGC
CAAAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGAATGC
CTCCGCCGTCGCCTCGAGATCTTCGTCCTCGATCAGACAGTCACGACACG
CAGGACACAGGGGATGCCGAGCTGGGAGAGATTAATATTCCCGACTCGAC
GGACGCCAGCGTTCCCCGTAGTTTTATTCGGAAAAAAGACAAATTAAGTA
CGAGTAACACGAGCATATCTTCCAGTAATTCTACTCGACGATGTAATTCA
GAATGGCACTCCGCTGTATCCAGccacgacggggaggacctGAAGCCACC
GGGGACACCATCACAGATACATCTCATGTCCTCCATGCATTCTCAGGTGG
TGAATGTTGTTCACCATGTTCAAGACTATCTCCATCACATgcCCAAGTGG
CAATACCGCCTGCTTTTATGCACTGTCATCATCCTttttgtctccctcgt
cctggtCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTGCCAC
ACATACGAGTGACGAACGTccgtctcgccctccccccaccacACGTGGAC
TCTGCCGGCCACATTCCCATcgtctccaccatcctcttctccaatcccaa
ctccttcttcaccacctccagcctCTCGCCTATACGCAtctacgccctcc
cctcccgctcccccgaGAGCCTGCTGGCCCTCACCGCGCCTCGGACCATC
CGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCACCTT
GAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCGGTTT
TGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGGCTTA
GGGCCGAGGCTGGAGATGCATgcgtgggtgggaaagagggggcggaaagC
GTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGGGCCA
AAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGA back to top
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