EWM26900.1, cds3767 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109030|gb|EWM26900.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana]) HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query: 1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315
MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP
Sbjct: 1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|553181298|ref|XP_005853540.1| (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >gi|422295520|gb|EKU22819.1| hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 516.153 bits (1328), Expect = 0.000e+0 Identity = 260/274 (94.89%), Postives = 260/274 (94.89%), Query Frame = 0
Query: 1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE----------VSKECRKGLGL 264
MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE SK KGLGL
Sbjct: 1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGL 274
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109031|gb|EWM26901.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana]) HSP 1 Score: 409.068 bits (1050), Expect = 3.696e-142 Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0
Query: 114 HMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315
H PKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP
Sbjct: 22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 223
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109033|gb|EWM26903.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana]) HSP 1 Score: 96.6709 bits (239), Expect = 5.009e-19 Identity = 57/149 (38.26%), Postives = 92/149 (61.74%), Query Frame = 0
Query: 104 VVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVL 252
+V + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V V + LP P G +P+ S + +NPN F + I +Y+ P+RSP SLL ++ L E ++ + F ++D+GSI+GG AVL
Sbjct: 180 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVL 325
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109034|gb|EWM26904.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana]) HSP 1 Score: 87.0409 bits (214), Expect = 9.528e-17 Identity = 52/139 (37.41%), Postives = 87/139 (62.59%), Query Frame = 0
Query: 104 VVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 242
+V + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V V + LP P G +P+ S + +NPN F + I +Y+ P+RSP SLL ++ L E ++ + F ++D+GSI+
Sbjct: 56 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|553181303|ref|XP_005853541.1| (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >gi|422295521|gb|EKU22820.1| hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 75.8702 bits (185), Expect = 7.658e-12 Identity = 55/174 (31.61%), Postives = 90/174 (51.72%), Query Frame = 0
Query: 104 VVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSF------------FTTSSLSPIR-----------------------IYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 242
+V + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V V + LP P G +P+ S + +NPN F T S L+ R +Y+ P+RSP SLL ++ L E ++ + F ++D+GSI+
Sbjct: 149 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 319
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585112577|gb|EWM29974.1| (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana]) HSP 1 Score: 69.707 bits (169), Expect = 7.362e-10 Identity = 57/185 (30.81%), Postives = 96/185 (51.89%), Query Frame = 0
Query: 74 VSSHDGEDLK-PPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYAL----PSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 253
+SS +GE + G P + S+ S V +V+ ++ LHH+P+W+YR L ++++ + L L+L VS++YGF + H+ VT L P VD+ G+ P+ +TI NPNSF T+S S + + + + L + PR I+L + +F L + + G A + AVL+
Sbjct: 90 LSSVEGEQAQNSTGVPLRAPSFSTTQS-VHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGT-TPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPR-IQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQ 271 The following BLAST results are available for this feature:
BLAST of EWM26900.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|