EWM26900.1, cds3767 (CDS) Nannochloropsis gaditana

Overview
NameEWM26900.1
Unique Namecds3767
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:17203..17546 +
Alignment locationCM002462.1:17790..17910 +
Alignment locationCM002462.1:18059..18541 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26900.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100103g12.7037.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:17203..17546 +
CM002462.1supercontigCM002462.1:17790..17910 +
CM002462.1supercontigCM002462.1:18059..18541 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109030|gb|EWM26900.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315
            MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP
Sbjct:    1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315          
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|553181298|ref|XP_005853540.1| (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >gi|422295520|gb|EKU22819.1| hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 516.153 bits (1328), Expect = 0.000e+0
Identity = 260/274 (94.89%), Postives = 260/274 (94.89%), Query Frame = 0
Query:    1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE----------VSKECRKGLGL 264
            MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE           SK   KGLGL
Sbjct:    1 MPPPSPRDLRPRSDSHDTQDTGDAELGEINIPDSTDASVPRSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGL 274          
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109031|gb|EWM26901.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 409.068 bits (1050), Expect = 3.696e-142
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0
Query:  114 HMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315
            H PKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP
Sbjct:   22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 223          
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109033|gb|EWM26903.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 96.6709 bits (239), Expect = 5.009e-19
Identity = 57/149 (38.26%), Postives = 92/149 (61.74%), Query Frame = 0
Query:  104 VVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVL 252
            +V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+GG     AVL
Sbjct:  180 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVL 325          
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585109034|gb|EWM26904.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 87.0409 bits (214), Expect = 9.528e-17
Identity = 52/139 (37.41%), Postives = 87/139 (62.59%), Query Frame = 0
Query:  104 VVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 242
            +V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:   56 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191          
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|553181303|ref|XP_005853541.1| (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >gi|422295521|gb|EKU22820.1| hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.8702 bits (185), Expect = 7.658e-12
Identity = 55/174 (31.61%), Postives = 90/174 (51.72%), Query Frame = 0
Query:  104 VVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSF------------FTTSSLSPIR-----------------------IYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 242
            +V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F             T S L+  R                       +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:  149 IVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 319          
BLAST of EWM26900.1 vs. NCBI_GenBank
Match: gi|585112577|gb|EWM29974.1| (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 69.707 bits (169), Expect = 7.362e-10
Identity = 57/185 (30.81%), Postives = 96/185 (51.89%), Query Frame = 0
Query:   74 VSSHDGEDLK-PPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYAL----PSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 253
            +SS +GE  +   G P +    S+  S V +V+  ++  LHH+P+W+YR L  ++++  + L L+L VS++YGF +   H+ VT     L P  VD+ G+ P+ +TI   NPNSF  T+S S + +  +      +    L +   PR I+L    +      +F L  + +   G A + AVL+
Sbjct:   90 LSSVEGEQAQNSTGVPLRAPSFSTTQS-VHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGT-TPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPR-IQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQ 271          
The following BLAST results are available for this feature:
BLAST of EWM26900.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109030|gb|EWM26900.1|0.000e+0100.00hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|553181298|ref|XP_005853540.1|0.000e+094.89hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
gi|585109031|gb|EWM26901.1|3.696e-14299.50hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|585109033|gb|EWM26903.1|5.009e-1938.26hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|585109034|gb|EWM26904.1|9.528e-1737.41hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|553181303|ref|XP_005853541.1|7.658e-1231.61hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
gi|585112577|gb|EWM29974.1|7.362e-1030.81hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3776rna3776Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications