rna3742, rna3742 (mRNA) Nannochloropsis gaditana

Overview
Namerna3742
Unique Namerna3742
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length827
Alignment locationCM002461.1:1106040..1107354 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101321g1.2569.mrna
Orig protein idgnl|cribi|Naga_101321g1.2569
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1106040..1107354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101321g1gene3605Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3742rna3742-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26940.1cds3733Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3742 ID=rna3742|Name=rna3742|organism=Nannochloropsis gaditana|type=mRNA|length=827bp
TGGGAACTCAAAGAAAGGGTTTCTTGCTACACACCACCCTTCAACGACCG
TCTGCAATGCCTGTTGAGTGCATGGATGCTGGCATGGAGGCAAAGAGTGC
ATGTGCCTGACCTATCATTCCCTCAAGGAAAAAGGCGCCAACCATCCAGC
CCCCCCCCCCCAGGAAAACCCGTACACTTCCTATCTGCCACAAACCTGGG
TATCTACCCTCTTTCATGTCCTCAAATTGCCAACATTCCCTATAAAAGTA
TTGGTGTACCAGGAAAAATACATGTCTTTGGGGACTGCGGCTACTGGCGC
GAGCCTATCGTCCGTCGCGACATCAGAAGCACCGTCTACACAAATTGAAG
ACGCTTCAACCCCGAAGCAAAACGCACTCCCAAACGCCACGGAAGACGAG
GAAAAAACCGGGCAGAACCAATCTCAAGCAAACGGTCAAGAAAACGAACA
CAAGGCAAACGATCACGGAGCCATACACGCAGGAAAAGGCTGGGAAAGCG
ACGTAATAGTCAAAGCCGAGTACCGCATACCCAAATTTGTGCCCATCTCG
GCCCCAGCTCCATCCTCCCTTCCTCCGTCAGATTTGCCCCTCCACCCTCG
ACACGATACGCCCGTGGCGGATACTCCGGACGCAAAAGCCAAGAAGAAAA
AAGGGGGACGGAACCATAAACGACCGCGGGACGATGCTCAGGCGGAGGGT
GGGGAAGGCTTGTGCCGGTCGTTTTTGGAGAAGCGGTGTCTGTACGGGGA
GGCATGCAAATTTTCTCATGACGTCAGAGGATATTTAGCCCGAAAACCAC
CGGATCTAGGAAGCCATTGCCCCGTCT
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protein sequence of rna3742

>rna3742-protein ID=rna3742-protein|Name=rna3742|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MHTHTHTTHSRAHKDSRHMPAVPSPPSVMAAGARDTSSDNQQSSKLTTAP
ARETLASMKNKEAAFYGMDSEEFTDRVTSIMTDYVEGAMQDVKRDFCRAM
AAGRGGVRGKHGGDGKEAGAVYESHVAPRVQQLIDRFSKRVDRRADAFEI
YLARNIFKVPEGTRESAGQVCVSNQREGYRMTIEALEGGG
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mRNA from alignment at CM002461.1:1106040..1107354+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3742 ID=rna3742|Name=rna3742|organism=Nannochloropsis gaditana|type=mRNA|length=1315bp|location=Sequence derived from alignment at CM002461.1:1106040..1107354+ (Nannochloropsis gaditana)
CAAGTCCACATGcatacacacacacacaccaCACACTCACGTGCACATAA
AGACAGCAGGCACATGCCGGCTGTGCCCTCGCCACCATCTGTCATGGCCG
CGGGTGCACGCGACACGAGCAGCGACAATCAACAGAGCAGTAAGCTGACT
ACCGCCCCTGCCCGCGAAACCCTAGCGAGCATGAAAAACAAAGAGGCAGC
CTTCTACGGCATGGATTCGGAGGAATTCACAGATCGAGGTAAGCCAGggg
tgaagaggatgcgggaACCGGGTAGCacgggagggcgtgaggcGGGTCAA
TAAGGTGCACTTAGCCCACGCCTCAGGTCCGGCACATACTGCAAAAATGG
ATAGAATCGTCCCATAATGCTCGTGTGTAGGCTTGAAAGACACCGTAGTT
GGCATAGCAAAGCTCCATGGGCCAAATCTTGGACCCTGCGTCTCGGGCCA
TGATTTTCCTGTGGCACTcaccatcccgccctccttgcccctcctcctcc
ttacaccttttcctccctcccacttaTCTTGTCGAAACAAGTGACAAGCA
TCATGACGGACTACGTGGAAGGGGCGATGCAAGACGTGAAACGTGATTTT
TGCCGTGCCATggcagcggggagggggggtgtCCGAGGGAAGCATGGGGG
AGACGGCAAGGAAGCTGGGGCCGTATACGAGTCCCATGTCGCACCggtaa
ggaggaaaaatagAGAGGAACGGAccagaaagagagaggaaaagggaaag
acaagCAAGGGCGGGGCATGGGTGTGGTgtgcgggcgtggaggaataGGA
GTTGACGGGGAATGGAAGTAACGAgatgaggggaggatgatgaagggagg
gaaaaggagaggccaGCCACCTCCTTTCTGCGGGATTTGCCACCTCCCTT
GCGCCTTTTCCACCGCGAAGACATTTAtcggcttccctccctccctctct
ccctccttccctccttgcctccttttttAGCGCGTGCAGCAACTGATCGA
CCGCTTCAGCAAGCGCGTGGACAGACGGGCAGACGCCTTTGAGATTTATT
TGGCGCGAAACATCTTTAAGGTGCCGGAGGGGACCAGGGAGTCTGCAGGa
caggtgaagaggagggaaggctctacggaggaaggaagggagatagggag
ggagggagggaggagggagggaggaaaggaaggcgagggcaggaTGTGGG
CCGTGGGAGGTGGTATCCTGTCGTGCGGGACAACGCTGTGGGGCCTTAGG
TCTGCGTGTCGAACCAGAGAGAGGGGTATAGGATGACCATAGAGGCCctt
gaagggggaggatga
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Coding sequence (CDS) from alignment at CM002461.1:1106040..1107354+

>rna3742 ID=rna3742|Name=rna3742|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002461.1:1106040..1107354+ (Nannochloropsis gaditana)
ATGcatacacacacacacaccaCACACTCACGTGCACATAAAGACAGCAG
GCACATGCCGGCTGTGCCCTCGCCACCATCTGTCATGGCCGCGGGTGCAC
GCGACACGAGCAGCGACAATCAACAGAGCAGTAAGCTGACTACCGCCCCT
GCCCGCGAAACCCTAGCGAGCATGAAAAACAAAGAGGCAGCCTTCTACGG
CATGGATTCGGAGGAATTCACAGATCGAGTGACAAGCATCATGACGGACT
ACGTGGAAGGGGCGATGCAAGACGTGAAACGTGATTTTTGCCGTGCCATg
gcagcggggagggggggtgtCCGAGGGAAGCATGGGGGAGACGGCAAGGA
AGCTGGGGCCGTATACGAGTCCCATGTCGCACCgCGCGTGCAGCAACTGA
TCGACCGCTTCAGCAAGCGCGTGGACAGACGGGCAGACGCCTTTGAGATT
TATTTGGCGCGAAACATCTTTAAGGTGCCGGAGGGGACCAGGGAGTCTGC
AGGacagGTCTGCGTGTCGAACCAGAGAGAGGGGTATAGGATGACCATAG
AGGCCcttgaagggggaggatgaATGcatacacacacacacaccaCACAC
TCACGTGCACATAAAGACAGCAGGCACATGCCGGCTGTGCCCTCGCCACC
ATCTGTCATGGCCGCGGGTGCACGCGACACGAGCAGCGACAATCAACAGA
GCAGTAAGCTGACTACCGCCCCTGCCCGCGAAACCCTAGCGAGCATGAAA
AACAAAGAGGCAGCCTTCTACGGCATGGATTCGGAGGAATTCACAGATCG
AGTGACAAGCATCATGACGGACTACGTGGAAGGGGCGATGCAAGACGTGA
AACGTGATTTTTGCCGTGCCATggcagcggggagggggggtgtCCGAGGG
AAGCATGGGGGAGACGGCAAGGAAGCTGGGGCCGTATACGAGTCCCATGT
CGCACCgCGCGTGCAGCAACTGATCGACCGCTTCAGCAAGCGCGTGGACA
GACGGGCAGACGCCTTTGAGATTTATTTGGCGCGAAACATCTTTAAGGTG
CCGGAGGGGACCAGGGAGTCTGCAGGacagGTCTGCGTGTCGAACCAGAG
AGAGGGGTATAGGATGACCATAGAGGCCcttgaagggggaggatgaATGc
atacacacacacacaccaCACACTCACGTGCACATAAAGACAGCAGGCAC
ATGCCGGCTGTGCCCTCGCCACCATCTGTCATGGCCGCGGGTGCACGCGA
CACGAGCAGCGACAATCAACAGAGCAGTAAGCTGACTACCGCCCCTGCCC
GCGAAACCCTAGCGAGCATGAAAAACAAAGAGGCAGCCTTCTACGGCATG
GATTCGGAGGAATTCACAGATCGAGTGACAAGCATCATGACGGACTACGT
GGAAGGGGCGATGCAAGACGTGAAACGTGATTTTTGCCGTGCCATggcag
cggggagggggggtgtCCGAGGGAAGCATGGGGGAGACGGCAAGGAAGCT
GGGGCCGTATACGAGTCCCATGTCGCACCgCGCGTGCAGCAACTGATCGA
CCGCTTCAGCAAGCGCGTGGACAGACGGGCAGACGCCTTTGAGATTTATT
TGGCGCGAAACATCTTTAAGGTGCCGGAGGGGACCAGGGAGTCTGCAGGa
cagGTCTGCGTGTCGAACCAGAGAGAGGGGTATAGGATGACCATAGAGGC
CcttgaagggggaggatgaATGcatacacacacacacaccaCACACTCAC
GTGCACATAAAGACAGCAGGCACATGCCGGCTGTGCCCTCGCCACCATCT
GTCATGGCCGCGGGTGCACGCGACACGAGCAGCGACAATCAACAGAGCAG
TAAGCTGACTACCGCCCCTGCCCGCGAAACCCTAGCGAGCATGAAAAACA
AAGAGGCAGCCTTCTACGGCATGGATTCGGAGGAATTCACAGATCGAGTG
ACAAGCATCATGACGGACTACGTGGAAGGGGCGATGCAAGACGTGAAACG
TGATTTTTGCCGTGCCATggcagcggggagggggggtgtCCGAGGGAAGC
ATGGGGGAGACGGCAAGGAAGCTGGGGCCGTATACGAGTCCCATGTCGCA
CCgCGCGTGCAGCAACTGATCGACCGCTTCAGCAAGCGCGTGGACAGACG
GGCAGACGCCTTTGAGATTTATTTGGCGCGAAACATCTTTAAGGTGCCGG
AGGGGACCAGGGAGTCTGCAGGacagGTCTGCGTGTCGAACCAGAGAGAG
GGGTATAGGATGACCATAGAGGCCcttgaagggggaggatga
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Synonyms
Publications