EWM26941.1, cds3732 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|585109082|gb|EWM26941.1| (trna-dihydrouridine synthase 3, partial [Nannochloropsis gaditana]) HSP 1 Score: 502.671 bits (1293), Expect = 4.257e-180 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 Query: 1 MCLTYHSLKEKGANHPAPPPQENPYTSYLPQTWVSTLFHVLKLPTFPIKVLVYQEKYMSLGTAATGASLSSVATSEAPSTQIEDASTPKQNALPNATEDEEKTGQNQSQANGQENEHKANDHGAIHAGKGWESDVIVKAEYRIPKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLEKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242 MCLTYHSLKEKGANHPAPPPQENPYTSYLPQTWVSTLFHVLKLPTFPIKVLVYQEKYMSLGTAATGASLSSVATSEAPSTQIEDASTPKQNALPNATEDEEKTGQNQSQANGQENEHKANDHGAIHAGKGWESDVIVKAEYRIPKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLEKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV Sbjct: 1 MCLTYHSLKEKGANHPAPPPQENPYTSYLPQTWVSTLFHVLKLPTFPIKVLVYQEKYMSLGTAATGASLSSVATSEAPSTQIEDASTPKQNALPNATEDEEKTGQNQSQANGQENEHKANDHGAIHAGKGWESDVIVKAEYRIPKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLEKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|695384275|ref|XP_009517953.1| (hypothetical protein PHYSODRAFT_324006 [Phytophthora sojae] >gi|348690864|gb|EGZ30678.1| hypothetical protein PHYSODRAFT_324006 [Phytophthora sojae]) HSP 1 Score: 63.1586 bits (152), Expect = 6.734e-8 Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0 Query: 167 RHDTPVADTPDAKA-KKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242 R T V D D + KKK+GG KRP D + + + LCR + C +G++CKFSHDV Y+ RKP DLG CPV Sbjct: 62 RDATEVKDGRDREGGKKKRGGTFKKRPAD-VEEDPADLLCRPVAAGEGCQFGDSCKFSHDVDDYMKRKPKDLGERCPV 138
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|926651671|ref|XP_013792377.1| (PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like, partial [Limulus polyphemus]) HSP 1 Score: 62.003 bits (149), Expect = 1.130e-7 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0 Query: 181 KKKKGGRNHKRPRDDAQAEGGEGLCRSFL-EKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242 KKK GRN +R R A+ E LC FL E C YG +C FSH++ +LA KPPDLG++C + Sbjct: 67 KKKLKGRNKQR-RQKARIPKDEKLCLKFLSENSCPYGTSCCFSHNIDSFLAHKPPDLGTNCYI 128
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|1214702187|gb|OWZ14424.1| (TRNA-dihydrouridine synthase [Phytophthora megakarya]) HSP 1 Score: 62.3882 bits (150), Expect = 1.184e-7 Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0 Query: 140 EYRI---PKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242 E+R+ P + P P+ P + H + + D D + KKK G KRP D Q + + LCR + C +G+ CKFSHD+ Y+ RKP DLG CPV Sbjct: 28 EHRVGEAPIKIAFLKPKPAPKPATSEYGHEKDASQAKDDRDREGGKKKRGTFKKRPADVDQ-DPADLLCRPVASGEGCQFGDNCKFSHDINDYMKRKPKDLGERCPV 133
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|301119491|ref|XP_002907473.1| (tRNA-dihydrouridine synthase 3 [Phytophthora infestans T30-4] >gi|262105985|gb|EEY64037.1| tRNA-dihydrouridine synthase 3 [Phytophthora infestans T30-4]) HSP 1 Score: 62.003 bits (149), Expect = 1.768e-7 Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0 Query: 172 VADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242 V D D KKK G KRP D A+ + + LCR + C +G++CKFSHD+ Y+ RKP DLG CPV Sbjct: 70 VKDDRDRDGGKKKRGTFKKRPID-AEQDPADLLCRPVASGEGCKFGDSCKFSHDIDDYMKRKPKDLGERCPV 140
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|1173962192|gb|OQS07990.1| (tRNA-dihydrouridine synthase 3 [Thraustotheca clavata]) HSP 1 Score: 60.8474 bits (146), Expect = 4.748e-7 Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0 Query: 164 LHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242 + P PV D + ++++G KRPRD A+ + LCR + C+YG++C+FSHDV +L R+P DLG CPV Sbjct: 367 VKPEFRRPVQPKQDGEGERERGT-FKKRPRDPAE-DPANLLCRGIAAGEGCVYGDSCRFSHDVEDFLKRRPKDLGDSCPV 444 The following BLAST results are available for this feature:
BLAST of EWM26941.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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