rna3680, rna3680 (mRNA) Nannochloropsis gaditana

Overview
Namerna3680
Unique Namerna3680
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1509
Alignment locationCM002461.1:959331..960993 +

Link to JBrowse

Properties
Property NameValue
Productzinc finger mynd domain-containing protein 19
Orig transcript idgnl|cribi|Naga_100079g14.10196.mrna
Orig protein idgnl|cribi|Naga_100079g14.10196
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:959331..960993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100079g14gene3544Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3680rna3680-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27007.1cds3671Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3680 ID=rna3680|Name=rna3680|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp
ATGTTTTCTACCCAATGCAACGGGTACACAATATTTCCGACTCACGCGTC
GCGGTTTTCAACGTGGCATTTTGTCAGGGCGCTCGCCTCTTTGAGGATCC
AAAGGTTCATTTCCAGCCTTGGGATGGAGACTCAATACTGTCTTCAAAGT
CGTGTCGGCCGAGGAGACCAAAAGCCCGAGTATGGCAGTATTTCCACGAA
TAAAATTTCTTCTATCCTTCAAAAAGGAAATGAAAATGAAGAAATGAATG
CGGGGGTTCCATCTTCAGCAGGTGAAGCCGTGGCAACCTCTGTTGTAGAG
CATAAGACAGGTTCATCTTCGTCATCGGATGCCTCGGGAGGACAATTTTT
TTTCTGGGTCCCCGGGTGGGCGTATCTCGTTCTCTTCATCCTTCTTTACT
CAGCCAACAATGCCGTTCTCTCAGGATTGATGGCAAGAGGGTACCCCTTC
ACCATTTGCAACATCATGTGCATCGGCAACGTCGTGGGTGTCCTCACCCT
CTTTCCTGTGTTCCACCGTCAACTGCGCCTGGCCCATCTCAAGCGTGTCA
CTCCTCTGCAATGGGGCTGGATGCTCTTGGGCTGCCTCCTTTCCAATGTC
TTGGGCTCCGTTGCTTACTTGCAAGGCCTACGACTGACCAGCGTGCCCGC
CAGGGCCATGACCGGCAGGTTGGAGAGCGTGGATTTCCTCGCAGCTTCGG
CCTGCTTTCTAGGGGACAGGTACAGCGCCTGGGTCCAGGCCAATGCCTTG
CTCACGGTACTGGGCGTAGTGGCCGCGGTCCTGTACCCCGTCTACGTCCA
GCACCACCCCTGGGAAGGCATGGTCGGGTACTCTTTCCTGGTGCTGGGTG
GGTGGGGCTACACGCTCTCCCTGATCATTACCAAGAAGTACTTGGTTCAA
CTTCCTGTCGGGCTCCTCTCCCTCTTCAAGCTCGCAATTGGCACCCTCCT
TTTTCATCTCCTCTCTGTCTGGCAGCACGGAGCCATGGATGTGCCCAGCC
TCCTGCCCTTCCCATCTCTCTACCCTTCCTCTCTCCTACGGACCATGCTA
TGGTATGCCCCTCTCTTCGTCACCTCCACACAGGTCCTGTGGCTTCGCGC
CGTAAAATTTTGCTCGCCTTCGGTCCTTTCCATCGGCATGAATGCGAATT
TCGTCGTGACTGTGCTGATGGGGGGTCTGATTTTGGGCACATGGCCGACG
ACGGGGGAGTTTGTGGGCGGGGCAGTGATTGTGGGGAGCATCGTAAGCGG
TATTACGGAGACAGTGGTTGAAAAGAGAGGCGAAAGTGTCGTAGAGGACA
CGAGGGAGGTGGCGGAAGAAGAGGGAAGGATGCGGAGGAGACTGCGATGT
TGCATGGCGGAAGTGCTTGCCAGGATACAAGAAAAAATGAGAAAGTTTCA
TTGTGGAACACTGTACGGCAGTGAAAGTGAGGTATCTGAACGGTATGAGT
TATTTGTATTCAAGAGCATTTGTACATATTTGATAAAATACTATGGGAGC
TTAAAGTGA
back to top

protein sequence of rna3680

>rna3680-protein ID=rna3680-protein|Name=rna3680|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSG
GNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQ
KCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQW
KTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVE
STNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDV
ASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGH
PVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAV
VKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD
back to top

mRNA from alignment at CM002461.1:959331..960993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3680 ID=rna3680|Name=rna3680|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp|location=Sequence derived from alignment at CM002461.1:959331..960993+ (Nannochloropsis gaditana)
CTTACTGGCAACGCGTCGTGCAATCTCTTCACAGAAAAAGGTAGAGGGCA
TGGCTGCTCTTTTAAGGTTTTGACGATAGTTTCATAGGAAACACTTGTGA
AGCCTGACGGTATAACTCTCCTAGACGTTTCCGTGCCAAATAATCACCAC
TTGGTGTAGTGAAAGTCACGGGTTTTGACCACATAACGATTGACCTTACT
ATATACACAGCGTATATTATGGCTACATCTCCGCAATCTGCTGACACCAA
AGGGATGCCATCATGCTCATCTTCATCGCTTGAAGCAGAATTGGCGCGGG
GTCTCCAACTGACTGCAGAGCTGACGTCGTACTCGAAGGGCAAAACCAAc
agcacaagcagcagcggcggcaatGAAAGCCCATCTTCCACAAATTCCAG
TCCTGTTGATTCTAGACAGGCCGCATTTCCTAATAAAGCAGGCATTTCTA
TCCTCTTTGATGCAGATTTGCAGTACGCCCCACCATCAGAAACGGACGAA
GAGGGGTCAACTTTGCAAAAATGTCATTTGCCAGCGTGTACTCAAATCGA
GGATCGCGCTTCCATTCGCCTGTCTTTGTGCGCACAATGTAAGGTAGCAC
GCTATTGTGGACGAGCGCACCAAGTATTGGACTGGAAGCAAGGGCATAAA
CACGAATGCGCGCAATGGAAGACATTGATGGCTATGAAAGCCTCGTCAAG
AGAGGCGGATGAACCCCTTCCAACCGCCGGGGGGAATAAAACGAATGCCA
GCAAAGCGCAAATCCCGACAGAAGTCGAGGCACCTTCCCTACAAACTGCA
GAATTTCCCGATGTTGAGAGTACAAACGAGAGTGGATCGTTGAAATCCAC
GCGTACAGACGAAAAGCATGGCAGCACTTTGACGGCTTCCTCGGCCGCAT
CCGAAGCCGCAGTCTCCCCCCGGCcagtcctttctccctccttttccact
ttGGACAAAAAGGACGTGGCCAGCAAACTCCTTTGCAAGCTTCGATTACA
CCTAGGGCCGTACACGCTCGCGCACTACGACAGGCAAGGTCGGGGCTTCG
GCTTCCTCCAAtccaccgccacggccggcgagctcctcctttcgcgGCCC
ATCAACCGCCTGGGGCATCCGGTCCAACGCCACGTCCTGCTCCACTACTT
GACGTGGGGAGAGTTTGTCAgcgtggtgctggaggatgATTTCGAATACA
CCGTGGCGCGGACCCCCTTGCAAGCGGCTTTGGCGGCCTACGACCCCGAG
GTCGAGTACGTGGCGGTGGTCAAACTCCGATGTGGCTTCCTGGGCGTCTT
CCGCGTCCCCTTGGTACCCCATGCCGCCGCCTGTCGCCGCCTGGCCGAGG
ATTACGCGTGGGCGGAACGGGCGTCGGTGACTCTGGAGCTGGATTGAGGC
GCTGGCCTTCCCAGGCCTCGTCGAGATTTGCGGGCttggcaagggggggg
aggcggggcggtTGGCCATGGAGGATCACCGACTGGCTGGACGTACACGT
GGCTAGGATGCGgcgggcgagagagaggtggAGCTTTCCACGGGGCGAAG
TGTTGTTCCAAGATGTAACCATAAGATTGGATCTGGGTAGCCTGGCGAAC
GTGAGCGACTAAAGAGAGGGACTGGGGCATGCGTTAGAATCAACATATtg
gggtgaaggaggg
back to top

Coding sequence (CDS) from alignment at CM002461.1:959331..960993+

>rna3680 ID=rna3680|Name=rna3680|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at CM002461.1:959331..960993+ (Nannochloropsis gaditana)
ATGGCTACATCTCCGCAATCTGCTGACACCAAAGGGATGCCATCATGCTC
ATCTTCATCGCTTGAAGCAGAATTGGCGCGGGGTCTCCAACTGACTGCAG
AGCTGACGTCGTACTCGAAGGGCAAAACCAAcagcacaagcagcagcggc
ggcaatGAAAGCCCATCTTCCACAAATTCCAGTCCTGTTGATTCTAGACA
GGCCGCATTTCCTAATAAAGCAGGCATTTCTATCCTCTTTGATGCAGATT
TGCAGTACGCCCCACCATCAGAAACGGACGAAGAGGGGTCAACTTTGCAA
AAATGTCATTTGCCAGCGTGTACTCAAATCGAGGATCGCGCTTCCATTCG
CCTGTCTTTGTGCGCACAATGTAAGGTAGCACGCTATTGTGGACGAGCGC
ACCAAGTATTGGACTGGAAGCAAGGGCATAAACACGAATGCGCGCAATGG
AAGACATTGATGGCTATGAAAGCCTCGTCAAGAGAGGCGGATGAACCCCT
TCCAACCGCCGGGGGGAATAAAACGAATGCCAGCAAAGCGCAAATCCCGA
CAGAAGTCGAGGCACCTTCCCTACAAACTGCAGAATTTCCCGATGTTGAG
AGTACAAACGAGAGTGGATCGTTGAAATCCACGCGTACAGACGAAAAGCA
TGGCAGCACTTTGACGGCTTCCTCGGCCGCATCCGAAGCCGCAGTCTCCC
CCCGGCcagtcctttctccctccttttccactttGGACAAAAAGGACGTG
GCCAGCAAACTCCTTTGCAAGCTTCGATTACACCTAGGGCCGTACACGCT
CGCGCACTACGACAGGCAAGGTCGGGGCTTCGGCTTCCTCCAAtccaccg
ccacggccggcgagctcctcctttcgcgGCCCATCAACCGCCTGGGGCAT
CCGGTCCAACGCCACGTCCTGCTCCACTACTTGACGTGGGGAGAGTTTGT
CAgcgtggtgctggaggatgATTTCGAATACACCGTGGCGCGGACCCCCT
TGCAAGCGGCTTTGGCGGCCTACGACCCCGAGGTCGAGTACGTGGCGGTG
GTCAAACTCCGATGTGGCTTCCTGGGCGTCTTCCGCGTCCCCTTGGTACC
CCATGCCGCCGCCTGTCGCCGCCTGGCCGAGGATTACGCGTGGGCGGAAC
GGGCGTCGGTGACTCTGGAGCTGGATTGA
back to top
Synonyms
Publications