EWM27007.1, cds3671 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|585109177|gb|EWM27007.1| (zinc finger mynd domain-containing protein 19 [Nannochloropsis gaditana]) HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0 Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query: 1 MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD
Sbjct: 1 MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|298713247|emb|CBJ33540.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 134.806 bits (338), Expect = 5.484e-33 Identity = 63/148 (42.57%), Postives = 97/148 (65.54%), Query Frame = 0
Query: 245 LDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
LD++ V +++L ++RL+L P+ + H + GRGF F+Q+ EL RP+N G + R ++LH+L+ GEFV VL+DDFE V R+PL+AA+ +YD + E V + + RCG++ V VPLVP A CR+L +Y E+ ++ L LD
Sbjct: 153 LDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEY--KEKDALQLNLD 298
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|1072231601|gb|OEU16333.1| (hypothetical protein FRACYDRAFT_160780, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 113.235 bits (282), Expect = 1.103e-25 Identity = 57/148 (38.51%), Postives = 90/148 (60.81%), Query Frame = 0
Query: 247 KKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAER--ASVTLELD 392
K+++ ++L ++R ++ PY + GRGF FLQ+ T +L + P + GH V R +LLH+LT GEF S V ++DFE + RTPL+ A+ +Y+ E E V + + RCG + + + LVP C++L +DY +AE +V L LD
Sbjct: 79 KQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQTDKTLQDLSVYIPKDCTGHTVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDY-YAENPAGAVQLNLD 225
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|219119314|ref|XP_002180420.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407893|gb|EEC47828.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 99.3673 bits (246), Expect = 1.457e-20 Identity = 53/148 (35.81%), Postives = 83/148 (56.08%), Query Frame = 0
Query: 246 DKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPV-QRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
DK+ ++L ++R ++ PY + GRGF F+QS T + L+ P + G P R +L++YLT GEF + V +DFE RT LQ A+ YD E E V +++ RCG + + LVP C++L DY ++E + L+L+
Sbjct: 88 DKQQACNELFGRIRFYVCPYAVHKATTLGRGFLFIQSDRTLATMSLTLPKDSYGRPTDNRALLIYYLTLGEFDAEVCREDFEMATVRTKLQEAVENYDEEDEIVILMRFRCGHVSLGTSALVPDHRVCKKLGIDY-YSESTAAALQLN 234
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|223992863|ref|XP_002286115.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977430|gb|EED95756.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 97.0561 bits (240), Expect = 2.368e-19 Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 0
Query: 246 DKKDVASK-LLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPI--NRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
D KD A + +L ++R + PY++ GRGF FLQS ++ L L P N +P QR VLLH+LT EF S V +DFE + L++A+ +Y+ EVE +++ RCG + V PLVP C+ L ++Y + + S ++L+
Sbjct: 122 DDKDSARQDILSRIRFYAFPYSVHKSSIVGRGFLFLQSDSSLAVLSLPAPTMSNGKKYPKQRSVLLHWLTMKEFSSEVCMEDFELASVQKELKSAVESYNEEVEVPVLMRFRCGHVAVGIAPLVPDIKLCKMLGKEYYGSGKGSGAVQLN 271
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|1210523190|dbj|GAX17827.1| (hypothetical protein FisN_18Hh027 [Fistulifera solaris]) HSP 1 Score: 88.5817 bits (218), Expect = 1.195e-16 Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 254 LLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERA-SVTLELD 392
+L ++RL+ PY + GRGF F+QST T L L R VLLHYLT GE+ + V DDFE T RT LQ A+ YD + + V +++ RCG + V +PL A C +L ++Y A ++ L+LD
Sbjct: 100 VLHQIRLYAMPYAVYQMQALGRGFLFIQSTQTLAALTLPGR--------NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGIIPLSLEFAVCLQLGKEYYQNVTAGALELQLD 231
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|1210521083|dbj|GAX20089.1| (hypothetical protein FisN_18Lh027 [Fistulifera solaris]) HSP 1 Score: 85.8853 bits (211), Expect = 1.709e-15 Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 0
Query: 257 KLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDY 379
++RL+ PY GRGF FLQST T L L R VLLHYLT GE+ + V DDFE T RT LQ A+ YD + + V +++ RCG + V +PL A C +L ++Y
Sbjct: 126 QIRLYAMPYAAHQMQTLGRGFLFLQSTQTLVALTLPGR--------NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGVIPLSLEYAVCLQLGKEY 240 The following BLAST results are available for this feature:
BLAST of EWM27007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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