EWM27007.1, cds3671 (CDS) Nannochloropsis gaditana

Overview
NameEWM27007.1
Unique Namecds3671
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:959549..960727 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27007.1
Productzinc finger mynd domain-containing protein 19
Orig transcript idgnl|cribi|Naga_100079g14.10196.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:959549..960727 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|585109177|gb|EWM27007.1| (zinc finger mynd domain-containing protein 19 [Nannochloropsis gaditana])

HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
            MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD
Sbjct:    1 MATSPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392          
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|298713247|emb|CBJ33540.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 134.806 bits (338), Expect = 5.484e-33
Identity = 63/148 (42.57%), Postives = 97/148 (65.54%), Query Frame = 0
Query:  245 LDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
            LD++ V +++L ++RL+L P+ + H +  GRGF F+Q+     EL   RP+N  G  + R ++LH+L+ GEFV  VL+DDFE  V R+PL+AA+ +YD + E V + + RCG++ V  VPLVP  A CR+L  +Y   E+ ++ L LD
Sbjct:  153 LDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEY--KEKDALQLNLD 298          
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|1072231601|gb|OEU16333.1| (hypothetical protein FRACYDRAFT_160780, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 113.235 bits (282), Expect = 1.103e-25
Identity = 57/148 (38.51%), Postives = 90/148 (60.81%), Query Frame = 0
Query:  247 KKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAER--ASVTLELD 392
            K+++ ++L  ++R ++ PY +      GRGF FLQ+  T  +L +  P +  GH V R +LLH+LT GEF S V ++DFE  + RTPL+ A+ +Y+ E E V + + RCG + + +  LVP    C++L +DY +AE    +V L LD
Sbjct:   79 KQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQTDKTLQDLSVYIPKDCTGHTVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDY-YAENPAGAVQLNLD 225          
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|219119314|ref|XP_002180420.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407893|gb|EEC47828.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.3673 bits (246), Expect = 1.457e-20
Identity = 53/148 (35.81%), Postives = 83/148 (56.08%), Query Frame = 0
Query:  246 DKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPV-QRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
            DK+   ++L  ++R ++ PY +      GRGF F+QS  T   + L+ P +  G P   R +L++YLT GEF + V  +DFE    RT LQ A+  YD E E V +++ RCG + +    LVP    C++L  DY ++E  +  L+L+
Sbjct:   88 DKQQACNELFGRIRFYVCPYAVHKATTLGRGFLFIQSDRTLATMSLTLPKDSYGRPTDNRALLIYYLTLGEFDAEVCREDFEMATVRTKLQEAVENYDEEDEIVILMRFRCGHVSLGTSALVPDHRVCKKLGIDY-YSESTAAALQLN 234          
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|223992863|ref|XP_002286115.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977430|gb|EED95756.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 97.0561 bits (240), Expect = 2.368e-19
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 0
Query:  246 DKKDVASK-LLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPI--NRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
            D KD A + +L ++R +  PY++      GRGF FLQS ++   L L  P   N   +P QR VLLH+LT  EF S V  +DFE    +  L++A+ +Y+ EVE   +++ RCG + V   PLVP    C+ L ++Y  + + S  ++L+
Sbjct:  122 DDKDSARQDILSRIRFYAFPYSVHKSSIVGRGFLFLQSDSSLAVLSLPAPTMSNGKKYPKQRSVLLHWLTMKEFSSEVCMEDFELASVQKELKSAVESYNEEVEVPVLMRFRCGHVAVGIAPLVPDIKLCKMLGKEYYGSGKGSGAVQLN 271          
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|1210523190|dbj|GAX17827.1| (hypothetical protein FisN_18Hh027 [Fistulifera solaris])

HSP 1 Score: 88.5817 bits (218), Expect = 1.195e-16
Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 0
Query:  254 LLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERA-SVTLELD 392
            +L ++RL+  PY +      GRGF F+QST T   L L            R VLLHYLT GE+ + V  DDFE T  RT LQ A+  YD + + V +++ RCG + V  +PL    A C +L ++Y     A ++ L+LD
Sbjct:  100 VLHQIRLYAMPYAVYQMQALGRGFLFIQSTQTLAALTLPGR--------NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGIIPLSLEFAVCLQLGKEYYQNVTAGALELQLD 231          
BLAST of EWM27007.1 vs. NCBI_GenBank
Match: gi|1210521083|dbj|GAX20089.1| (hypothetical protein FisN_18Lh027 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 1.709e-15
Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 0
Query:  257 KLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDY 379
            ++RL+  PY        GRGF FLQST T   L L            R VLLHYLT GE+ + V  DDFE T  RT LQ A+  YD + + V +++ RCG + V  +PL    A C +L ++Y
Sbjct:  126 QIRLYAMPYAAHQMQTLGRGFLFLQSTQTLVALTLPGR--------NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGVIPLSLEYAVCLQLGKEY 240          
The following BLAST results are available for this feature:
BLAST of EWM27007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109177|gb|EWM27007.1|0.000e+0100.00zinc finger mynd domain-containing protein 19 [Nan... [more]
gi|298713247|emb|CBJ33540.1|5.484e-3342.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072231601|gb|OEU16333.1|1.103e-2538.51hypothetical protein FRACYDRAFT_160780, partial [F... [more]
gi|219119314|ref|XP_002180420.1|1.457e-2035.81predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223992863|ref|XP_002286115.1|2.368e-1936.67predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210523190|dbj|GAX17827.1|1.195e-1638.57hypothetical protein FisN_18Hh027 [Fistulifera sol... [more]
gi|1210521083|dbj|GAX20089.1|1.709e-1540.65hypothetical protein FisN_18Lh027 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3680rna3680Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications