EWM27017.1, cds3657 (CDS) Nannochloropsis gaditana

Overview
NameEWM27017.1
Unique Namecds3657
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:917309..917671 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27017.1
Productnadh dehydrogenase iron-sulfur protein mitochondrial precursor
Orig transcript idgnl|cribi|Naga_100444g3.1597.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:917309..917671 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC
Homology
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|585109188|gb|EWM27017.1| (nadh dehydrogenase iron-sulfur protein mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 250.366 bits (638), Expect = 2.774e-84
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
            MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH
Sbjct:    1 MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|673041271|ref|XP_008874596.1| (hypothetical protein H310_10110 [Aphanomyces invadans] >gi|574469806|gb|ETV96819.1| hypothetical protein H310_10110 [Aphanomyces invadans])

HSP 1 Score: 92.0485 bits (227), Expect = 1.102e-21
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0
Query:   59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
            HRS+AE L+AQ PV EV   VA+CDGGGG +GHP+EYI LNTV ++  TCKYCGL+YK   H
Sbjct:   53 HRSDAEILIAQVPVVEVDSDVAVCDGGGGALGHPLEYIALNTVSDKPQTCKYCGLRYKQKPH 114          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|698816380|ref|XP_009841219.1| (hypothetical protein H257_14968 [Aphanomyces astaci] >gi|574103824|gb|ETV69362.1| hypothetical protein H257_14968 [Aphanomyces astaci])

HSP 1 Score: 91.6633 bits (226), Expect = 1.256e-21
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0
Query:   59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
            HRS+AE  +AQ PV EV   VA+CDGGGG +GHP+EYI LN V ++  TCKYCGL+YK  HH
Sbjct:   54 HRSDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDKPQTCKYCGLRYKQKHH 115          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|298710747|emb|CBJ32168.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7373 bits (221), Expect = 1.154e-20
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 0
Query:   28 IMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
            + +A SR    + P+++     S S Y HGAHRS+AE  +A+ PV  V G VALCDGGGG +GHP++YIQL +       C+YCG  Y+M  H
Sbjct:   35 LTTAASRPFSQLAPTTTFSKERSKSVYEHGAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTLYQMKTH 127          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|635362943|emb|CCI10373.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 89.3521 bits (220), Expect = 2.462e-20
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    8 RQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGE-EVATCKYCGLQYKM 117
            RQLA    A  V       A +S+   R F+    + P    +        HRS+AE  +A+ P+ EV G+ A+CDGGGG +GHP+EYIQL+TV   E  TCKYCG++YKM
Sbjct:   31 RQLAKHSVALHVPSYNALRATISSGCERSFATIYDAKPRKEDTVR------HRSDAEVRIAKLPIVEVEGSFAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKM 135          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|325193767|emb|CCA27988.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 87.8113 bits (216), Expect = 5.325e-20
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 0
Query:    5 SITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGE-EVATCKYCGLQYKM 117
            S  RQLA    A R          +     R F+    + P   P ++ +    HRS+AE  +AQ PV EV G +A+CDGGGG +GHP+EYIQL+TV   E  TCKYCG++YKM
Sbjct:    7 SRCRQLAKHSVALRTVSYKGLRETIGVGCGRSFATIYDAKP--RPDDTVH----HRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKM 114          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|1173960052|gb|OQS06219.1| (hypothetical protein THRCLA_20420 [Thraustotheca clavata])

HSP 1 Score: 85.8853 bits (211), Expect = 2.358e-19
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0
Query:   59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
            H S+AE  +AQ PV EV G  A+CDGGGG +GHP+EYI L+ V +E   CKYCGL++K +HH
Sbjct:   49 HHSDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSKEPQVCKYCGLRFKKSHH 110          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|1210513088|dbj|GAX27904.1| (hypothetical protein FisN_21Hu254 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 3.068e-19
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0
Query:    6 ITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPS--NSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQY 115
            + R +++V       R   APA+ S+P    F+         N S   SPY  G HRSNA ELV + P+ EV G +A+CDGGGG +GHP+EYI L   G  V +CKYC L+Y
Sbjct:   13 LPRNVSSVAVRSMASRPPLAPAVHSSPE---FNRSKEEKRLENHSYKESPYKLGKHRSNAMELVHKVPIIEVEGEMAVCDGGGGALGHPLEYISLARPG-AVESCKYCALRY 120          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|1173951499|gb|OQR99373.1| (hypothetical protein ACHHYP_06948 [Achlya hypogyna])

HSP 1 Score: 84.7297 bits (208), Expect = 5.777e-19
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0
Query:   59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
            H S+AE  +AQ PV EV    A+CDGGGG +GHP+EYI L+ V +E   CKYCGL++K AHH
Sbjct:   52 HHSDAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALDIVSQEPQACKYCGLRFKKAHH 113          
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|675186495|ref|XP_008902132.1| (hypothetical protein PPTG_09037 [Phytophthora parasitica INRA-310] >gi|566029096|gb|ETI52007.1| hypothetical protein F443_04767 [Phytophthora parasitica P1569] >gi|567966419|gb|ETK91867.1| hypothetical protein L915_04655 [Phytophthora parasitica] >gi|567995122|gb|ETL45265.1| hypothetical protein L916_04610 [Phytophthora parasitica] >gi|568024400|gb|ETL98436.1| hypothetical protein L917_04495 [Phytophthora parasitica] >gi|568054823|gb|ETM51597.1| hypothetical protein L914_04603 [Phytophthora parasitica] >gi|568097377|gb|ETN12119.1| hypothetical protein PPTG_09037 [Phytophthora parasitica INRA-310] >gi|570332805|gb|ETO80753.1| hypothetical protein F444_04821 [Phytophthora parasitica P1976] >gi|570956813|gb|ETP21792.1| hypothetical protein F441_04768 [Phytophthora parasitica CJ01A1] >gi|570992112|gb|ETP49710.1| hypothetical protein F442_04847 [Phytophthora parasitica P10297] >gi|970616284|gb|KUF64468.1| NADH dehydrogenase iron-sulfur protein 6 [Phytophthora nicotianae])

HSP 1 Score: 83.9593 bits (206), Expect = 1.428e-18
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   37 FSVPPSSSPPSNPSNSPYTH-GAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEV-ATCKYCGLQYKM 117
            F +  SS      +++P+     HRS+AE+ +AQ PV E+  +VA+CDGGGG +GHP+EYIQL+T       TCKYCG++YKM
Sbjct:   29 FRLQISSFSTIYDNHTPFEDINRHRSDAEQRIAQVPVVELASSVAVCDGGGGALGHPVEYIQLDTRKHNTPQTCKYCGVRYKM 111          
The following BLAST results are available for this feature:
BLAST of EWM27017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109188|gb|EWM27017.1|2.774e-84100.00nadh dehydrogenase iron-sulfur protein mitochondri... [more]
gi|673041271|ref|XP_008874596.1|1.102e-2164.52hypothetical protein H310_10110 [Aphanomyces invad... [more]
gi|698816380|ref|XP_009841219.1|1.256e-2162.90hypothetical protein H257_14968 [Aphanomyces astac... [more]
gi|298710747|emb|CBJ32168.1|1.154e-2046.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|635362943|emb|CCI10373.1|2.462e-2043.24unnamed protein product [Albugo candida][more]
gi|325193767|emb|CCA27988.1|5.325e-2043.86conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173960052|gb|OQS06219.1|2.358e-1958.06hypothetical protein THRCLA_20420 [Thraustotheca c... [more]
gi|1210513088|dbj|GAX27904.1|3.068e-1943.75hypothetical protein FisN_21Hu254 [Fistulifera sol... [more]
gi|1173951499|gb|OQR99373.1|5.777e-1958.06hypothetical protein ACHHYP_06948 [Achlya hypogyna... [more]
gi|675186495|ref|XP_008902132.1|1.428e-1848.19hypothetical protein PPTG_09037 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3666rna3666Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications