rna3666, rna3666 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3666
Unique Name	rna3666
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1579
Alignment location	CM002461.1:916975..918185 -

Link to JBrowse

Properties


Property Name	Value
Product	nadh dehydrogenase iron-sulfur protein mitochondrial precursor
Orig transcript id	gnl\|cribi\|Naga_100444g3.1597.mrna
Orig protein id	gnl\|cribi\|Naga_100444g3.1597
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:916975..918185 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100444g3	gene3531	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27017.1	cds3657	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3666	rna3666-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:916975..918185-
coding sequence from alignment at CM002461.1:916975..918185-

mRNA sequence

>rna3666 ID=rna3666|Name=rna3666|organism=Nannochloropsis gaditana|type=mRNA|length=1579bp
CTGTCGCATTCTAATAAATTCCCTTCACATGAATCCTGAAATTCCACAGC
CCCGGGAATGGTGAATGAAGACAGCTATCTTGTACCGCCAAAACTTCTGG
AGGCCTTTCGCCGAGACGGGGTCGTGGTATTGCCTGGAGTCTTCACTGAA
GAGGAGATACTCGAGGCCAAGACCGGGTTAGCGACAACACTTAAAATACA
TGAAGTGGACGTTCAAGATCTTGAGAAGACGGCTGGTAATTTACGCAAAC
TTTCTACCACCGGGGGCTCCGGAGGCGTTCTAGACATTTTTTACGCTCCT
TGGAAGCTTCGCCTTTCAGAAAATCCTCGATTCTTCAGCGCGATTTCTCA
ATTATGGGCAGCTACTTACGCAGAAGGACGCGCATCGTCAAAGGGAGGCG
TTTGTATGGATGTGAGAAGAGGGACGATGGAAGGACAGGGAGAGGAGAGG
GAGGAAGAAAGAGGGATTGACGCGACAGATGACGAGCAGCCGCTGTATGC
CCATCCCCACGGACCCTTCGACCCCCGGCGCGGCTATTTCTACCTGGACC
GGTGTGGTTTCCGTGTGCCTGATCGCATCAGTGCACAACATGCCAAGGGG
AAACGGCCTCTGCAACGCTCGCTCACTCCCCACCTCGATTGTTGCCCGGC
AGCGCTCTATACCTCAGACAAGGCGGTCCCACGCTGGCGCCCCGTCCAGA
GCTTCGTGGCCCTCACAGACAATTTGGGGCCTCAGACCGGCGGCTTTGAA
TGCGTGAAAGGCTGGCATCGTACCTTCCAGAGCTGGGCGGACCATCGACC
GACCTGTCGTCAAACGGGGAAAGCCGCGCCTTGCGTCGGCGACTTCACCC
CCATCCGTCCCGTGGAAGACGCCGAGGTGATTGCTCGCTTTGCTCCTGTC
TACTACCAGGCTGGAAGCGTCATAGCCTTCGATTGGCGCATCCCCCATGC
CAACGCCACGCACCATGTCGGGCCGGAACCTCGGCAAGTCAGCTACGCCA
GTTTTCTTCCCGATGTGCCAGTGAACCGGGAATATGCCCGGCGCCAAGCT
CAACGGTTTTACAACGGGTTGCAGCCGGACGACCAATGGAAAGAAAATTC
CGACAGTAGGGAGGTATATGGCGATGGCTCTGTCTTCGAGTTCTCCGACT
TGGGGCGCCGCTTGCTGGGATTCGGTGCGGAGGAAGTGAGTTTACGTGCT
GAAAATGAAATCGGAGCTCTAGAAAGAGGCGATGCGGGCAGAGAGGACAA
TTTGTGCAGATTCTCAGGACGTAGACAGCCGGGAGATCCTTGTAGTGCGG
GACAGAAAAGGGAATGTGGGAAACAAGGGTGTACCTAGAGGTTTTTCGCA
AAATTCTCATAGTTTTCTTTAAAAAGCTTATTAGATTGCCTGCATTACAG
GAAAGGAGTGCAATATAGCTAAAGCCCTGGATTGGACCGTACGAAATCGT
CCTGTCCAGGGGTTTGCTAATCCATCGGAGACTCCTTTCTTGTGAAATGG
ACAATATAATCAAGCTCCTGTACGATAGACACGTTGGCAGGGATATAAAG
CAAATGTAGGACTATGATCGCTGTTGTCC

protein sequence of rna3666

>rna3666-protein ID=rna3666-protein|Name=rna3666|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPS
NSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNT
VGEEVATCKYCGLQYKMAHH

mRNA from alignment at CM002461.1:916975..918185-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3666 ID=rna3666|Name=rna3666|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp|location=Sequence derived from alignment at CM002461.1:916975..918185- (Nannochloropsis gaditana)
ACTAGACATGTATGTTATGACAGAGCTGGTCTGCGTGCTTGCCAGGGGAG
ACGTAGAGATCGGAATGGAAGCCTTCCTTTGTCTCGCGCCCGCTCAACGT
GGTTTTGCGTAGTGGAAAGACCCACACGGATACATGAGCCAGATAAAATA
TGGCATATGTGACACATTAACGCTGATTGAGGGGTTATGTGCGTGTATGT
GGTTCGAAAGGTTGCGGTTAACAGGGCATCAGGAGCAGCAAGCTACAGGG
TACAGGCGTGAAGGCTGGTTAGAGTCGTCAAGATTAAGTGCGTGCGCGCA
TTTTGTTGTGCCTATCATCACATTCATTCTCAGAGAATAATAGCATGCCG
ATACGTTGTGGTGCTTCAATGCCATGAATGTGGAAGCCTGGGGCCTAGGA
AGGGGCAAGCATGTAGCACTAAGCGTGGGTCATCTCGAGGACTAAATACC
TTTCCTGCCTCAACCCGGGCACCAAACACAGGGCACAGGATCGCAGCACA
CACATCAGGAATTCATGCTGCGCAATTCAATTACACGGCAGCTCGCTACT
GTAAAGACAGCCTTCCGGGTTCAGCGCAGAGTGCATGCGCCCGCTATCAT
GAGCGCCCCTTCGCGGCGTTGCTTCTCTGTTCCCCCATCCTCGTCCCCGC
CTTCAAACCCCAGCAACTCTCCGTACACTCACGGCGCGCACCGAAGTAAT
GCCGAAGAACTCGTCGCACAGTTCCCGGTGACAGAGGTGCATGGGACGGT
GGCATTGTGCGATGGAGGGGGAGGGGGCATGGGTCACCCGATCGAGTACA
TCCAGCTCAACACAGTGGGGGAGGAAGTTGCAACCTGCAAGTACTGTGGA
CTGCAGTACAAGATGGCACATCACTGACGAATGTGGGATCGCTCTTCTTA
AAAGAGTAGCCGCTTGTGGAGGACAAAATTTGTGCCCCTTGGATGTGGAA
AAGAAATTTACAGGAAGCAAACTTTCCTGGACAACAGCGATCATAGTCCT
ACATTTGCTTTATATCCCTGCCAACGTGTCTATCGTACAGGAGCTTGATT
ATATTGTCCATTTCACAAGAAAGGAGTCTCCGATGGATTAGCAAACCCCT
GGACAGGACGATTTCGTACGGTCCAATCCAGGGCTTTAGCTATATTGCAC
TCCTTTCCTGTAATGCAGGCAATCTAATAAGCTTTTTAAAGAAAACTATG
AGAATTTTGCG

Coding sequence (CDS) from alignment at CM002461.1:916975..918185-

>rna3666 ID=rna3666|Name=rna3666|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at CM002461.1:916975..918185- (Nannochloropsis gaditana)
ATGCTGCGCAATTCAATTACACGGCAGCTCGCTACTGTAAAGACAGCCTT
CCGGGTTCAGCGCAGAGTGCATGCGCCCGCTATCATGAGCGCCCCTTCGC
GGCGTTGCTTCTCTGTTCCCCCATCCTCGTCCCCGCCTTCAAACCCCAGC
AACTCTCCGTACACTCACGGCGCGCACCGAAGTAATGCCGAAGAACTCGT
CGCACAGTTCCCGGTGACAGAGGTGCATGGGACGGTGGCATTGTGCGATG
GAGGGGGAGGGGGCATGGGTCACCCGATCGAGTACATCCAGCTCAACACA
GTGGGGGAGGAAGTTGCAACCTGCAAGTACTGTGGACTGCAGTACAAGAT
GGCACATCACTGA

Synonyms

Publications