EWM27017.1, cds3657 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|585109188|gb|EWM27017.1| (nadh dehydrogenase iron-sulfur protein mitochondrial precursor [Nannochloropsis gaditana]) HSP 1 Score: 250.366 bits (638), Expect = 2.774e-84 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH
Sbjct: 1 MLRNSITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|673041271|ref|XP_008874596.1| (hypothetical protein H310_10110 [Aphanomyces invadans] >gi|574469806|gb|ETV96819.1| hypothetical protein H310_10110 [Aphanomyces invadans]) HSP 1 Score: 92.0485 bits (227), Expect = 1.102e-21 Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0
Query: 59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
HRS+AE L+AQ PV EV VA+CDGGGG +GHP+EYI LNTV ++ TCKYCGL+YK H
Sbjct: 53 HRSDAEILIAQVPVVEVDSDVAVCDGGGGALGHPLEYIALNTVSDKPQTCKYCGLRYKQKPH 114
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|698816380|ref|XP_009841219.1| (hypothetical protein H257_14968 [Aphanomyces astaci] >gi|574103824|gb|ETV69362.1| hypothetical protein H257_14968 [Aphanomyces astaci]) HSP 1 Score: 91.6633 bits (226), Expect = 1.256e-21 Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0
Query: 59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
HRS+AE +AQ PV EV VA+CDGGGG +GHP+EYI LN V ++ TCKYCGL+YK HH
Sbjct: 54 HRSDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDKPQTCKYCGLRYKQKHH 115
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|298710747|emb|CBJ32168.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 89.7373 bits (221), Expect = 1.154e-20 Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 0
Query: 28 IMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
+ +A SR + P+++ S S Y HGAHRS+AE +A+ PV V G VALCDGGGG +GHP++YIQL + C+YCG Y+M H
Sbjct: 35 LTTAASRPFSQLAPTTTFSKERSKSVYEHGAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTLYQMKTH 127
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|635362943|emb|CCI10373.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 89.3521 bits (220), Expect = 2.462e-20 Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 0
Query: 8 RQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGE-EVATCKYCGLQYKM 117
RQLA A V A +S+ R F+ + P + HRS+AE +A+ P+ EV G+ A+CDGGGG +GHP+EYIQL+TV E TCKYCG++YKM
Sbjct: 31 RQLAKHSVALHVPSYNALRATISSGCERSFATIYDAKPRKEDTVR------HRSDAEVRIAKLPIVEVEGSFAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKM 135
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|325193767|emb|CCA27988.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 87.8113 bits (216), Expect = 5.325e-20 Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 0
Query: 5 SITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGE-EVATCKYCGLQYKM 117
S RQLA A R + R F+ + P P ++ + HRS+AE +AQ PV EV G +A+CDGGGG +GHP+EYIQL+TV E TCKYCG++YKM
Sbjct: 7 SRCRQLAKHSVALRTVSYKGLRETIGVGCGRSFATIYDAKP--RPDDTVH----HRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKM 114
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|1173960052|gb|OQS06219.1| (hypothetical protein THRCLA_20420 [Thraustotheca clavata]) HSP 1 Score: 85.8853 bits (211), Expect = 2.358e-19 Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0
Query: 59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
H S+AE +AQ PV EV G A+CDGGGG +GHP+EYI L+ V +E CKYCGL++K +HH
Sbjct: 49 HHSDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSKEPQVCKYCGLRFKKSHH 110
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|1210513088|dbj|GAX27904.1| (hypothetical protein FisN_21Hu254 [Fistulifera solaris]) HSP 1 Score: 85.8853 bits (211), Expect = 3.068e-19 Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0
Query: 6 ITRQLATVKTAFRVQRRVHAPAIMSAPSRRCFSVPPSSSPPSNPS--NSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQY 115
+ R +++V R APA+ S+P F+ N S SPY G HRSNA ELV + P+ EV G +A+CDGGGG +GHP+EYI L G V +CKYC L+Y
Sbjct: 13 LPRNVSSVAVRSMASRPPLAPAVHSSPE---FNRSKEEKRLENHSYKESPYKLGKHRSNAMELVHKVPIIEVEGEMAVCDGGGGALGHPLEYISLARPG-AVESCKYCALRY 120
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|1173951499|gb|OQR99373.1| (hypothetical protein ACHHYP_06948 [Achlya hypogyna]) HSP 1 Score: 84.7297 bits (208), Expect = 5.777e-19 Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0
Query: 59 HRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
H S+AE +AQ PV EV A+CDGGGG +GHP+EYI L+ V +E CKYCGL++K AHH
Sbjct: 52 HHSDAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALDIVSQEPQACKYCGLRFKKAHH 113
BLAST of EWM27017.1 vs. NCBI_GenBank
Match: gi|675186495|ref|XP_008902132.1| (hypothetical protein PPTG_09037 [Phytophthora parasitica INRA-310] >gi|566029096|gb|ETI52007.1| hypothetical protein F443_04767 [Phytophthora parasitica P1569] >gi|567966419|gb|ETK91867.1| hypothetical protein L915_04655 [Phytophthora parasitica] >gi|567995122|gb|ETL45265.1| hypothetical protein L916_04610 [Phytophthora parasitica] >gi|568024400|gb|ETL98436.1| hypothetical protein L917_04495 [Phytophthora parasitica] >gi|568054823|gb|ETM51597.1| hypothetical protein L914_04603 [Phytophthora parasitica] >gi|568097377|gb|ETN12119.1| hypothetical protein PPTG_09037 [Phytophthora parasitica INRA-310] >gi|570332805|gb|ETO80753.1| hypothetical protein F444_04821 [Phytophthora parasitica P1976] >gi|570956813|gb|ETP21792.1| hypothetical protein F441_04768 [Phytophthora parasitica CJ01A1] >gi|570992112|gb|ETP49710.1| hypothetical protein F442_04847 [Phytophthora parasitica P10297] >gi|970616284|gb|KUF64468.1| NADH dehydrogenase iron-sulfur protein 6 [Phytophthora nicotianae]) HSP 1 Score: 83.9593 bits (206), Expect = 1.428e-18 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0
Query: 37 FSVPPSSSPPSNPSNSPYTH-GAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEV-ATCKYCGLQYKM 117
F + SS +++P+ HRS+AE+ +AQ PV E+ +VA+CDGGGG +GHP+EYIQL+T TCKYCG++YKM
Sbjct: 29 FRLQISSFSTIYDNHTPFEDINRHRSDAEQRIAQVPVVELASSVAVCDGGGGALGHPVEYIQLDTRKHNTPQTCKYCGVRYKM 111 The following BLAST results are available for this feature:
BLAST of EWM27017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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