rna3648, rna3648 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3648
Unique Name	rna3648
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1301
Alignment location	CM002461.1:880324..881832 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100056g7.10470.mrna
Orig protein id	gnl\|cribi\|Naga_100056g7.10470
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:880324..881832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g7	gene3514	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3648	rna3648-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27057.1	cds3639	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:880324..881832+
coding sequence from alignment at CM002461.1:880324..881832+

mRNA sequence

>rna3648 ID=rna3648|Name=rna3648|organism=Nannochloropsis gaditana|type=mRNA|length=1301bp
CGCTAGCTTACCAGCAGTAGCACCAGAGTCAATGACTGTGCGTCGACTAC
TCAGGCCGTTCGCCAGCATTGTTTTCCGAGAGAGGGACCGTAAAGAATCG
TCAGATGTCATCATCAGCTTGTGATACTGCAGCCGATTAAAAACGTAAGC
AGAGATGGCATCAGGCATGGTGAAAAGCATCACCAGTAGAAGGACGCGAA
CCCGTCCTCGGGACTGCATATTTTCTGGAGGAGAAGGAGCGTGCCCTTGC
GTAAATTTCTCGGCAATGATTGTCAAACGTGCATTGACTGATGCCTTTTA
GACTGAACGGGTCTCGACCTCGCGTCTACAAGCGATTTTGTCGTTGGCGA
GGCCGCTTGACCGTTCTGCCCCATTTTTTGACACGCTGGAAACCCTCCTT
GGAAACAGAGATGCGACCAACGCAAAGCTGTCTATGCATAACAATGCTTC
TGATGGCCAGCTTGGTAATTCAGGGTTTCTTAGGAACTGTGCAAGGGCCA
AGACAGAGGAGGGACATAAGTTTAAGCGCAGCGCCCGCTAGAAGAGGTGA
CGATCGACGCCATGTGTTCAAAAAGGCAGCAACAACCGTGCTGCTTTTGA
CTACTGCCGCAAGCACGTCCCCCACCCTTTCTGCCCCGTATGACCAAGTA
GAAGTGAGCGACCCCATTTTCCCTAATATCACGGAGCCAGCTGTAACGTC
TGTCTGTTTTCTAGAATTTGCTTCAGAAAAGACCAATTTCGGCAGGATTG
AGGTCTCCCTATATGGAAAAGTGTGCCCACAGACCGCAGCAAATTTCGAA
GCCCTGTGCCGGGACGGTTACAAGGGCAGCAACGTTTATCGCGTCCTCAA
GGACTTTTCCATACAGATGGGCGATATCGGTAGTAAAAAACGAGGGGCAA
CAGGACGCTCTTCCTTGAAAGGCGGCACCCCGTTGCCTAAGGAAACGTTG
CGGGTGCAGCACTCGTTGGAGGGAATGCTCTCCATGGTGAACGATAAATC
AGGCACGGTCGACTCGCGATTCTTCATCAATATGGGGAAGGACGGTTCCT
GGGCAGATGGGCGCTATGTGGCTTTTGGAAGGGTGACGAAAGGCTTGGAG
GTGCTGAAAGAAGTGGAGAAAGTGGAGGTGAAGCCCCCGAGTAATGTGCC
CACCCTACCCATCAAGATCACGGCGGCGGGCGTGCTCTAGGCACTTCTGT
AGGGACTAAAGCTAGCACAGAAAGGAATTGGACGGTGGTGCACACCATTC
AACTGAGAGCAAAAAAGAAAGCAAATTGTGTCTGCTGCCTAGGCGCATCT
T

protein sequence of rna3648

>rna3648-protein ID=rna3648-protein|Name=rna3648|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MQSRGRVRVLLLVMLFTMPDAISAYVFNRLQYHKLMMTSDDSLRSLSRKT
MLANGLSSRRTVIDSGATAGKLAAALFLTHPSAAQARIKGAAEIDAEAYF
QDLLKGNPLTGGIEQSAIEIRPARVLDKEFATFLDKTTLKLLSETSGVSM
EGVEREVAAFRQAVEPGFQRRAPFPTGDLSNERCFDCYSYADFRVAAKLI
PNLRARATFVRQLGETVLGKIFEGQRAIDAKAVPRTYDAQKDGLEEALTG
LSRILAYMKLKGFLKDFRVNADDYDRASWDEGFSLEVLVTVIEPATLGGN
VQFTGEGFLFHPDYVAETLLAYLALCGVRNAKALQYLLDTEYRPNPKDYN
PTEVLYQISLGKGSEN

mRNA from alignment at CM002461.1:880324..881832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3648 ID=rna3648|Name=rna3648|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp|location=Sequence derived from alignment at CM002461.1:880324..881832+ (Nannochloropsis gaditana)
CCGTTCAGTCTAAAAGGCATCAGTCAATGCACGTTTGACAATCATTGCCG
AGAAATTTACGCAAGGGcacgctccttctcctccagaaAATATGCAGTCC
CGAGGACGGGTTCGCGTCCTTCTACTGGTGATGCTTTTCACCATGCCTGA
TGCCATCTCTGCTTACGTTTTTAATCGGCTGCAGTATCACAAGCTGATGA
TGACATCTGACGATTCTTTACGGTCCCTCTCTCGGAAAACAATGCTGGCG
AACGGCCTGAGTAGTCGACGCACAGTCATTGACTCTGGTGCTACTGCTGG
TAAGCTAGCGGCGGCCTTGTTTCTCACACATCCTTCGGCTGCACAGGCTC
GTATAAAGGGAGCCGCCGAAATTGATGCGGAAGCATATTTTCAAGATCTC
TTGAAAGGTAATCCGCTGACGGGGGGAATTGAGCAATCTGCAATTGAAAT
TCGACCTGCTCGGGTGCTCGACAAAGAGTTCGCGACATTTTTGGACAAAA
CAACATTAAAATTATTAAGTGAAACGTCGGGCGTCTCTATGGAAggtgtg
gagagggaagtaGCTGCTTTCAGACAAGCTGTGGAGCCAGGATTTCAACG
ACGGGCGCCCTTTCCGACGGGCGACTTGAGCAATGAACGGTGTTTCGACT
GCTATTCTTATGCCGATTTCCGTGTCGCGGCAAAGCTCATCCCCAACCTG
CGCGCCCGAGCCACTTTCGTCCGTCAGCTGGGAGAGACTGTTCTTGGTAA
AATCTTTGAGGGTCAAAGGGCAATCGATGCAAAAGCCGTGCCTCGAACGT
ACGATGCGCAAAAAGATGGGTTGGAAGAGGCACTAACCGGGCTTAGCAGA
ATTCTTGCTTACATGAAATTGAAAGGCTTTCTGAAAGATTTCCGGGTGAA
CGCCGATGACTACGACCGAGCCTCCTGGGATGAAGGGTTCAGCCTAGAGG
TGCTGGTAACGGTCATAGAACCAGCGACATTGGGAGGAAACGTTCAATTC
ACCGGGGAAGGGTTTCTTTTTCATCCGGACTACGTCGCTGAAACCTTGCT
GGCCTACTTGGCACTTTGTGGTGTACGGAACGCAAAAGCACTCCAGGTAC
GGGAAACGCATTTTGATGAGGGGCACAATGTGTAATCTTCGATGTTTATG
ACAATTTGAGAACGTCCGAATTGGGTATCGCATTATTTTGTTTTTGAGCT
TCATACGTTCGAAACAGTCTTACCTCTCCGCCAAACCTTGAGGGCCGTCA
TGAACTGCCGTATGAGGACGAAATTGTCAATGTGAGTCACTGTCCTGCAT
TATTCTCTTTATTACACAGTACCTGCTCGACACGGAGTATCGTCCAAATC
CGAAGGACTACAACCCCACTGAAGTTTTGTATCAAATAAGTCTCGGAAAG
GGATCAGAAAATTAAGGGGTGGCAGCATCATTCATGTATTATTCTATAAA
ACGACTTAAGCATTCAAATAAAAATATTAAAGATAAGCCTAAACTCATTT
TGTGCTCGG

Coding sequence (CDS) from alignment at CM002461.1:880324..881832+

>rna3648 ID=rna3648|Name=rna3648|organism=Nannochloropsis gaditana|type=CDS|length=2202bp|location=Sequence derived from alignment at CM002461.1:880324..881832+ (Nannochloropsis gaditana)
ATGCAGTCCCGAGGACGGGTTCGCGTCCTTCTACTGGTGATGCTTTTCAC
CATGCCTGATGCCATCTCTGCTTACGTTTTTAATCGGCTGCAGTATCACA
AGCTGATGATGACATCTGACGATTCTTTACGGTCCCTCTCTCGGAAAACA
ATGCTGGCGAACGGCCTGAGTAGTCGACGCACAGTCATTGACTCTGGTGC
TACTGCTGGTAAGCTAGCGGCGGCCTTGTTTCTCACACATCCTTCGGCTG
CACAGGCTCGTATAAAGGGAGCCGCCGAAATTGATGCGGAAGCATATTTT
CAAGATCTCTTGAAAGGTAATCCGCTGACGGGGGGAATTGAGCAATCTGC
AATTGAAATTCGACCTGCTCGGGTGCTCGACAAAGAGTTCGCGACATTTT
TGGACAAAACAACATTAAAATTATTAAGTGAAACGTCGGGCGTCTCTATG
GAAggtgtggagagggaagtaGCTGCTTTCAGACAAGCTGTGGAGCCAGG
ATTTCAACGACGGGCGCCCTTTCCGACGGGCGACTTGAGCAATGAACGGT
GTTTCGACTGCTATTCTTATGCCGATTTCCGTGTCGCGGCAAAGCTCATC
CCCAACCTGCGCGCCCGAGCCACTTTCGTCCGTCAGCTGGGAGAGACTGT
TCTTGGTAAAATCTTTGAGGGTCAAAGGGCAATCGATGCAAAAGCCGTGC
CTCGAACGTACGATGCGCAAAAAGATGGGTTGGAAGAGGCACTAACCGGG
CTTAGCAGAATTCTTGCTTACATGAAATTGAAAGGCTTTCTGAAAGATTT
CCGGGTGAACGCCGATGACTACGACCGAGCCTCCTGGGATGAAGGGTTCA
GCCTAGAGGTGCTGGTAACGGTCATAGAACCAGCGACATTGGGAGGAAAC
GTTCAATTCACCGGGGAAGGGTTTCTTTTTCATCCGGACTACGTCGCTGA
AACCTTGCTGGCCTACTTGGCACTTTGTGGTGTACGGAACGCAAAAGCAC
TCCAGTACCTGCTCGACACGGAGTATCGTCCAAATCCGAAGGACTACAAC
CCCACTGAAGTTTTGTATCAAATAAGTCTCGGAAAGGGATCAGAAAATTA
AATGCAGTCCCGAGGACGGGTTCGCGTCCTTCTACTGGTGATGCTTTTCA
CCATGCCTGATGCCATCTCTGCTTACGTTTTTAATCGGCTGCAGTATCAC
AAGCTGATGATGACATCTGACGATTCTTTACGGTCCCTCTCTCGGAAAAC
AATGCTGGCGAACGGCCTGAGTAGTCGACGCACAGTCATTGACTCTGGTG
CTACTGCTGGTAAGCTAGCGGCGGCCTTGTTTCTCACACATCCTTCGGCT
GCACAGGCTCGTATAAAGGGAGCCGCCGAAATTGATGCGGAAGCATATTT
TCAAGATCTCTTGAAAGGTAATCCGCTGACGGGGGGAATTGAGCAATCTG
CAATTGAAATTCGACCTGCTCGGGTGCTCGACAAAGAGTTCGCGACATTT
TTGGACAAAACAACATTAAAATTATTAAGTGAAACGTCGGGCGTCTCTAT
GGAAggtgtggagagggaagtaGCTGCTTTCAGACAAGCTGTGGAGCCAG
GATTTCAACGACGGGCGCCCTTTCCGACGGGCGACTTGAGCAATGAACGG
TGTTTCGACTGCTATTCTTATGCCGATTTCCGTGTCGCGGCAAAGCTCAT
CCCCAACCTGCGCGCCCGAGCCACTTTCGTCCGTCAGCTGGGAGAGACTG
TTCTTGGTAAAATCTTTGAGGGTCAAAGGGCAATCGATGCAAAAGCCGTG
CCTCGAACGTACGATGCGCAAAAAGATGGGTTGGAAGAGGCACTAACCGG
GCTTAGCAGAATTCTTGCTTACATGAAATTGAAAGGCTTTCTGAAAGATT
TCCGGGTGAACGCCGATGACTACGACCGAGCCTCCTGGGATGAAGGGTTC
AGCCTAGAGGTGCTGGTAACGGTCATAGAACCAGCGACATTGGGAGGAAA
CGTTCAATTCACCGGGGAAGGGTTTCTTTTTCATCCGGACTACGTCGCTG
AAACCTTGCTGGCCTACTTGGCACTTTGTGGTGTACGGAACGCAAAAGCA
CTCCAGTACCTGCTCGACACGGAGTATCGTCCAAATCCGAAGGACTACAA
CCCCACTGAAGTTTTGTATCAAATAAGTCTCGGAAAGGGATCAGAAAATT
AA

Synonyms

Publications