EWM27032.1, cds3614 (CDS) Nannochloropsis gaditana

Overview
NameEWM27032.1
Unique Namecds3614
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:831596..832465 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27032.1
Productphosphatidate cytidylyltransferase
Orig transcript idgnl|cribi|Naga_100056g35.10445.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:831596..832465 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|585109206|gb|EWM27032.1| (phosphatidate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MTYVGQRKGLELIVIGAQAGAYNEVAKLLDRGLSLPSSLPSRWLWFVLAFNTGHSWAYGETLMPSLLPSWLHWYWPGRRLVQYLAYVCLLGGSITPKGPGEQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLLRTMLGPAPDDVPRALGGLLSLSDWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRARE 289
            MTYVGQRKGLELIVIGAQAGAYNEVAKLLDRGLSLPSSLPSRWLWFVLAFNTGHSWAYGETLMPSLLPSWLHWYWPGRRLVQYLAYVCLLGGSITPKGPGEQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLLRTMLGPAPDDVPRALGGLLSLSDWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRARE
Sbjct:    1 MTYVGQRKGLELIVIGAQAGAYNEVAKLLDRGLSLPSSLPSRWLWFVLAFNTGHSWAYGETLMPSLLPSWLHWYWPGRRLVQYLAYVCLLGGSITPKGPGEQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLLRTMLGPAPDDVPRALGGLLSLSDWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRARE 289          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|1109237345|ref|XP_019193328.1| (PREDICTED: phosphatidate cytidylyltransferase 1-like [Ipomoea nil])

HSP 1 Score: 143.28 bits (360), Expect = 8.596e-36
Identity = 94/212 (44.34%), Postives = 112/212 (52.83%), Query Frame = 0
Query:  104 QRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLL---------RTMLG-------PAPDDVPR--ALGGLLSLS-----------DWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPR 286
            Q Q    A  H  L L+    S  VA + + G+  F+L   L+ VND+ AYL+G   GKTPL KLSPKK+WEGF GA+V TM SA LL  LL         R  L        P P   P   +LG LL               W +L L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG  DR+DCQ+ M+ FSY++L   A P+
Sbjct:  227 QYQFGQFAWTHMILILVFTQSSFTVANIFE-GIFWFILPASLIAVNDVAAYLIGFFFGKTPLIKLSPKKTWEGFIGASVATMISAFLLANLLGRFQWLTCPRKDLSTGWLQCDPGPLFKPEYYSLGSLLPNEFPWKEISVLPVQWHSLCLGLFASVIAPFGGFFASGFKRAFKFKDFGDSIPGHGGFTDRMDCQMVMAIFSYIYLQSFALPQ 437          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|1072922490|ref|XP_018471886.1| (PREDICTED: phosphatidate cytidylyltransferase 2 isoform X2 [Raphanus sativus])

HSP 1 Score: 139.813 bits (351), Expect = 2.506e-35
Identity = 86/213 (40.38%), Postives = 111/213 (52.11%), Query Frame = 0
Query:  104 QRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLLRTML------------------GPAPDDVPRALGGLLSL-----------SDWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRA 287
            + Q +  A  H  L ++    S  VA + + G+  FLL   L+VVNDI AY+ G   G+TPL KLSPKK+WEGF GA++ TM SA LL  ++   L                  GP       AL G +S              W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++      P++
Sbjct:  117 KYQFSQYAWTHMILIVVFTQSSFTVANIFE-GIFWFLLPASLIVVNDIFAYICGFFFGRTPLIKLSPKKTWEGFIGASITTMISAFLLANIMGRFLWLTCPREDLSTGWLQCDPGPLFKQETHALPGWISNWLPWKEISVLPVQWHALCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPQS 328          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|474167021|gb|EMS57464.1| (Phosphatidate cytidylyltransferase [Triticum urartu] >gi|475549872|gb|EMT11339.1| Phosphatidate cytidylyltransferase [Aegilops tauschii])

HSP 1 Score: 137.117 bits (344), Expect = 2.837e-35
Identity = 87/198 (43.94%), Postives = 109/198 (55.05%), Query Frame = 0
Query:  106 QVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLL---RTMLGPAPDDVPRAL----GGLLS-----LSD-----WQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPR 286
            Q    A  H  L  +    S  VA + + G+  FLL   L+V+NDI AYL G  LG+TPL KLSPKK+WEGF GA+V T+ SA LL  ++   + +  P  D     L    G +       L D     W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++     SP 
Sbjct:   30 QFKQYAWTHMILLTVFAQSSFTVANIFE-GMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFLLANVMGHFQWLTCPRKDLSTGWLTCDPGSMFKPEHYFLGDWVPQWWHALALGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPH 226          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|1072922484|ref|XP_018471883.1| (PREDICTED: phosphatidate cytidylyltransferase 2 isoform X1 [Raphanus sativus] >gi|1072922486|ref|XP_018471884.1| PREDICTED: phosphatidate cytidylyltransferase 2 isoform X1 [Raphanus sativus] >gi|1072922488|ref|XP_018471885.1| PREDICTED: phosphatidate cytidylyltransferase 2 isoform X1 [Raphanus sativus])

HSP 1 Score: 139.428 bits (350), Expect = 9.195e-35
Identity = 86/216 (39.81%), Postives = 112/216 (51.85%), Query Frame = 0
Query:  101 EQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLLRTML------------------GPAPDDVPRALGGLLSL-----------SDWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRA 287
            +  + Q +  A  H  L ++    S  VA + + G+  FLL   L+VVNDI AY+ G   G+TPL KLSPKK+WEGF GA++ TM SA LL  ++   L                  GP       AL G +S              W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++      P++
Sbjct:  172 KMYKYQFSQYAWTHMILIVVFTQSSFTVANIFE-GIFWFLLPASLIVVNDIFAYICGFFFGRTPLIKLSPKKTWEGFIGASITTMISAFLLANIMGRFLWLTCPREDLSTGWLQCDPGPLFKQETHALPGWISNWLPWKEISVLPVQWHALCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPQS 386          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|923743788|ref|XP_013672062.1| (PREDICTED: phosphatidate cytidylyltransferase 2 [Brassica napus] >gi|923743790|ref|XP_013672063.1| PREDICTED: phosphatidate cytidylyltransferase 2 [Brassica napus] >gi|674954675|emb|CDX79148.1| BnaA01g12150D [Brassica napus])

HSP 1 Score: 139.428 bits (350), Expect = 1.174e-34
Identity = 85/216 (39.35%), Postives = 112/216 (51.85%), Query Frame = 0
Query:  101 EQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLLRTML------------------GPAPDDVPRALGGLLSL-----------SDWQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRA 287
            +  + Q +  A  H  L ++    S  VA + + G+  FLL   L+V+NDI AY+ G   G+TPL KLSPKK+WEGF GA++ TM SA LL  ++   L                  GP       AL G +S              W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++      P++
Sbjct:  173 KMYKYQFSQYAWTHMILIVVFTQSSFTVANIFE-GIFWFLLPASLIVINDIFAYICGFFFGRTPLIKLSPKKTWEGFIGASITTMISAFLLANIMGRFLWLTCPREDLSTGWLQCDPGPLFKQETHALPGWISNWLPWKEISVLPVQWHALCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPQS 387          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|641859738|gb|KDO78428.1| (hypothetical protein CISIN_1g014818mg [Citrus sinensis])

HSP 1 Score: 135.576 bits (340), Expect = 1.190e-34
Identity = 85/212 (40.09%), Postives = 114/212 (53.77%), Query Frame = 0
Query:  101 EQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLL---------RTMLG-------PAPDDVPRA--LGGLLSLSD-------WQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRA 287
            +  + Q +  A  H  L ++    S  VA + + G+  FLL   L+V+NDI AY+ G   G+TPL KLSPKK+WEGF GA+V T+ SA +L  ++         R  L        P P   P +  L G L   +       W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++      P++
Sbjct:   23 KMYKYQFSQYAWTHMILIVVFAQSSFTVASIFE-GIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQS 233          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|731366011|ref|XP_010694835.1| (PREDICTED: phosphatidate cytidylyltransferase 1 [Beta vulgaris subsp. vulgaris] >gi|870845325|gb|KMS98073.1| hypothetical protein BVRB_4g095860 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 138.658 bits (348), Expect = 1.821e-34
Identity = 84/207 (40.58%), Postives = 112/207 (54.11%), Query Frame = 0
Query:  101 EQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLL---------RT-------------MLGPAPDDVPRALGGLLSLSD-------WQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLF 278
            +  + Q    A  H  L ++    S  VA + + G+  FLL   L+V+NDI AYL G   GKTPL KLSPKK+WEGF GA++ T+ SA LL  ++         RT             +  P   ++PR +   L+  D       W AL L  F+S  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++
Sbjct:  171 KMYKYQFGQYAWTHMILIVVFTQSSFTVANIFE-GMFWFLLPASLIVINDIAAYLCGFFFGKTPLIKLSPKKTWEGFIGASIATIISAFLLANVMGRFEWLTCPRTDLSTGWLHCDPGPLFKPEYYNMPRWIANSLAWKDLPVMPVQWHALGLGLFSSIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIY 376          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|641859733|gb|KDO78423.1| (hypothetical protein CISIN_1g014818mg [Citrus sinensis])

HSP 1 Score: 138.272 bits (347), Expect = 1.869e-34
Identity = 85/198 (42.93%), Postives = 111/198 (56.06%), Query Frame = 0
Query:  101 EQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASA--PLLVRLLRTMLGP--APDDVPRALGGLLSLSD-------WQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRA 287
            +  + Q +  A  H  L ++    S  VA + + G+  FLL   L+V+NDI AY+ G   G+TPL KLSPKK+WEGF GA+V T+ SA   L    L    GP   P+  P  L G L   +       W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++      P++
Sbjct:  170 KMYKYQFSQYAWTHMILIVVFAQSSFTVASIFE-GIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVDLATGWLHCDPGPLFKPESFP--LPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQS 364          
BLAST of EWM27032.1 vs. NCBI_GenBank
Match: gi|567915073|ref|XP_006449850.1| (hypothetical protein CICLE_v10015379mg [Citrus clementina] >gi|557552461|gb|ESR63090.1| hypothetical protein CICLE_v10015379mg [Citrus clementina])

HSP 1 Score: 136.346 bits (342), Expect = 1.960e-34
Identity = 85/212 (40.09%), Postives = 114/212 (53.77%), Query Frame = 0
Query:  101 EQLQRQVAHLAGLHFALFLIVGLGSGYVAILKQWGVRPFLLSVLLVVVNDIGAYLVGVPLGKTPLTKLSPKKSWEGFWGAAVLTMASAPLLVRLL---------RTMLG-------PAPDDVPRA--LGGLLSLSD-------WQALILAAFASFGAPIGGILASAAKRATGTKDFGDSIPGHGGVMDRVDCQLFMSAFSYLFLSCSASPRA 287
            +  + Q +  A  H  L ++    S  VA + + G+  FLL   L+V+NDI AY+ G   G+TPL KLSPKK+WEGF GA+V T+ SA +L  ++         R  L        P P   P +  L G L   +       W AL L  FAS  AP GG  AS  KRA   KDFGDSIPGHGG+ DR+DCQ+ M+ F+Y++      P++
Sbjct:   66 KMYKYQFSQYAWTHMILIVVFAQSSFTVASIFE-GIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQS 276          
The following BLAST results are available for this feature:
BLAST of EWM27032.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109206|gb|EWM27032.1|0.000e+0100.00phosphatidate cytidylyltransferase [Nannochloropsi... [more]
gi|1109237345|ref|XP_019193328.1|8.596e-3644.34PREDICTED: phosphatidate cytidylyltransferase 1-li... [more]
gi|1072922490|ref|XP_018471886.1|2.506e-3540.38PREDICTED: phosphatidate cytidylyltransferase 2 is... [more]
gi|474167021|gb|EMS57464.1|2.837e-3543.94Phosphatidate cytidylyltransferase [Triticum urart... [more]
gi|1072922484|ref|XP_018471883.1|9.195e-3539.81PREDICTED: phosphatidate cytidylyltransferase 2 is... [more]
gi|923743788|ref|XP_013672062.1|1.174e-3439.35PREDICTED: phosphatidate cytidylyltransferase 2 [B... [more]
gi|641859738|gb|KDO78428.1|1.190e-3440.09hypothetical protein CISIN_1g014818mg [Citrus sine... [more]
gi|731366011|ref|XP_010694835.1|1.821e-3440.58PREDICTED: phosphatidate cytidylyltransferase 1 [B... [more]
gi|641859733|gb|KDO78423.1|1.869e-3442.93hypothetical protein CISIN_1g014818mg [Citrus sine... [more]
gi|567915073|ref|XP_006449850.1|1.960e-3440.09hypothetical protein CICLE_v10015379mg [Citrus cle... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3623rna3623Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications