rna3596, rna3596 (mRNA) Nannochloropsis gaditana

Overview
Namerna3596
Unique Namerna3596
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2119
Alignment locationCM002461.1:775291..776932 -

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Properties
Property NameValue
Productisoprenoid biosynthesis enzyme
Orig transcript idgnl|cribi|Naga_100046g44.5135.mrna
Orig protein idgnl|cribi|Naga_100046g44.5135
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:775291..776932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g44gene3463Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27096.1cds3587Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3596rna3596-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3596 ID=rna3596|Name=rna3596|organism=Nannochloropsis gaditana|type=mRNA|length=2119bp
CTTTTACGTACTCCCACCACAATAAAACAGGCTGCAGGAATGCTTTCGTC
GAAGGCCGGCAGACTTTTGTGGCTTGGTGCTGCCGGTGGAAGCAGCAGCA
TGGTGGCTTTCGCCCTCGCAAATCACACAGCGGAAACGCCAGTGAGACTC
ACCATAGAAGACAAGAATCTTTCTGACCGTCTCCGCCGCCTTCAACGCGA
AGTTTATGAGACGTTGCGGCTGGATTCAGTGGAGCGGGCGGGCCGCACCC
TCTCTTACGGACTCCTAACAGCTGCAGACTATAAATTTTCGCTGGCAGGC
TTGGAGCCAGGAACAGAAAAATACAAAGAAAAGCAATCAGAAGTCCATCT
TCGAGCCGCGCAACGCATTTTATACGTGTGCCAACGGCAGGGAGGGGTGT
TCGTGAAAGCGGGGCAGTACATCTCCAGCTTGGTCAAGATCCTCCCTGAC
GAATTTACCGACACGCTGAGGGTGCTGCAGGACAAAAACCCGGGGGAATC
TTTCGAAGACGTCTGCCGTGTTTTGGAGGAAGACCTCGGCGTGCCCTGGC
ATCAGCTGTTCGCGGCCTTCTCCCCGAAGCCCATCGCCGCCGCCTCGCTC
GCCCAGGTCCATCGTGCCACCACCCACGACGGCGACGAGGTGGCGGTGAA
GATCCAGTACCCTCGCCTGGCCAGCCAGGTTGAGAGCGACTTCTTCACCC
TGAAAGTGCTGGCGACGGTGGTGGGCGCCATGTTCAGGGACTGGGAGTAC
ACCTGGTTGTTCCCGGAGCTGGAGGAAAGCGTGCACCTGGAGCTGGATTT
CTTGCAGGAGGCGACGAACGGAGAGCGGGTGGGGCGGCTGTTGGAAAGGG
ATGGACGCATCCACATCCCTCGCGTCCGGTGGGACCTGAGCAGCGCCCGG
GTCCTGACCATGGAGTTTATCGACGGCGTCAAGGTCACGGACGTGGGGAG
GCTCAAGGCGAGCGGGATCGACCCGCGGGCGGTCGGGGAGACGATCAGCA
ATCTCTTCTCGCTCATGGTCTTCTCGCTGGGCTTGGTCCACTGCGACCCC
CACCCTGGAAACCTTTTGATTCGGCACCCTCCACCCCCCCGGTCGGCACC
GAGAAGATGGGCGTGGCGCCTGCAAGGACTCCTGGGGCTGCGACCGAACT
TCGAAGTGGTGCTCTTGGACCACGGACTGTACCGGCGGCTGGACGAATCC
TTCCGACAGAGCTACTGTAATCTGTGGAAAGCCTTCGTGACGCGCGACGC
AGGCCTGGGGCGCGCCGCCACTCGCGCCATGGGACTGGACGAAGACTTCT
TTGAGCTCCTTTCCATCATAAGCGTGAATCGCACCCCGACCTCCCGAAAT
GGGCTGGGTGAACAGATGTCCGAGTCGGAGCGGAAGCGCATTCGAGAGAA
ATACCGGGATCGGAGCAAGTACGGTGCGGAACAGCTGAAAAAGCTGATCG
AATCTCTGCCCCGAGATGTCTTGTTTGTGCTGCGCTCCAATTCGCTGGTT
CGGTCCTTGAACACAGAACTGGGCGCGAATGTGGGGACGCGCTTCCGCAT
CTTCGGCTCTTCGGCTATGACGGGCTTGAGCATGCCGGCCCCCCGCGTCC
TTCCCTCCCAGGCCTACTTCTTGGACGAGATTCGAGACTACTCCCAGGTC
CTTCCGGGAGGAGGGCGGGTTTTGCAGAAGCGGAAGAAGAGCGAGATGCT
GAACCGGCCTGAGGCCCCCTTGAACAGTGCCACGGCCTCGGAGGCAGTCC
TCTTCTCCTCTTACACCCGCCCCTCCCTGTGGAAAGAAGCTCAGCGGCAG
GTGATGTTGACGGATTTGCGGTTGCGGCTGTGGCTCGTGGATGCGGCTTT
TGAATGGATGACCTGGCTGCGGCGACGGATCCCCTCGAACGCGGAGGCAC
TGCCCGTGACGGTGGGGGGGGAGAAAATGGTTGAGAGGCAATTGCATGTG
GATCTGGAAGAGGAGGGAGACAAGGAAAGTACAGGAGGGGACGCAAAAAT
AACGGCCTCGTGTGTAAATTAATAATGGGGGCTTAGGTGCAATGGGCCAG
ACGTCAAAGTACGCAGACAATTAGCCCGAGTGTGTGTCCAGGGATAACGT
GCCTCAAGGCAATCGCAGG
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protein sequence of rna3596

>rna3596-protein ID=rna3596-protein|Name=rna3596|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MLPFLRTACFNRTVRRHPPLALLKSLMITSPARPRLAAFSTKSSGPDPAN
HGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARG
NALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRL
LEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAAS
HVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEA
AQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVR
TTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGKI
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mRNA from alignment at CM002461.1:775291..776932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3596 ID=rna3596|Name=rna3596|organism=Nannochloropsis gaditana|type=mRNA|length=1642bp|location=Sequence derived from alignment at CM002461.1:775291..776932- (Nannochloropsis gaditana)
GTGTCTAAGGCATATTTTTGCCCCGCTCCAGAAGAGAATGACCTCCTGTA
TCCAGGCGCTGCTGGGCTTTTACACGTGAGAAAATTCATCCACTGGTCCG
CACTGCAAACACTTGAAGTGAATAGATACGGAAATTCATTTTTCATGGTA
TCCGCGTTTTTGGGTTGATAGCATATGATACAACATCACTTGTTCCTGCT
TTATCATGCTCCTCCGTGAAACAGCCTACTTATTTTTCGCTTCACACTTT
ATTTCCTCCGGTTAGGGACAGTTTTGATGCTTCCATTCTTGCGAACAGCA
TGTTTCAATCGCACAGTACGTCGCCATCCTCCACTCGCCTTGCTAAAATC
ACTAATGATAACCAGCCCTGCGCGACCCCGTCTTGCTGCCTTCTCGACCA
AGTCAAGCGGGCCAGACCCCGCCAATCACGGCCAGTACTGCGTGGAACTG
GTCAAGCAGCATGATTTCGACGCCTATCTATGCGGATTGCTTGTCCCGAG
ATCCTCGCGGCGGGCCTACTTTGCACTGCGGGCATTCAATGTCGAAACGG
CCCTAATCAAAGACGTGGCCAGGGGCAACGCTCTTCCCGGACAGATGCGC
ATGCAATGGTGGAGAGAAGTTATAAGCGGGATTTACCAAGGAAAGTCCCC
CGCGCATCCCGTAGCACGCGCCCTGTGCGAAGCAGTACAAGCCCACAATC
TGACGCGGCGATGGCTGGACCGGCTATTGGAGGCCCGCGAGGGGGACCTC
GGGAACATCCAGCCGACGCGCATGGAGGAGCTGGAGGACTACGCCGAGAA
CACGGCGTCCTCTCTACTCTACCTGACACTGGAGGCTTTGCACGTCCGCC
ACCCCACCGCGGACCACGCTGCCAGCCACGTGGGCCGGGCCACTGGGATC
GCCACCGTCCTCCGGGCCACTAAGTTCCACGCCTCCCACCAAAGCCTGTA
CGTCCCCCTCGAGATCCAGCGAGAGTTCAAAGTAAATGTGAACGACATCC
TGCGGGGACCTGAGTCCCCCGAAGCGGCGCAAGCGCTCTCGGATATGTTC
TTCGAGGTCGCCACGCAGGCTCACCTTCACATGGAGCACGCGCGGGAGAT
GCTCGCCTCCCCGCCCCCGTCCTCCAGCGGCCCCTTGCCCCGTAATACAA
TCACTGCACTCCTACCTGCCGTCCGTACCACCATGTATCTCAAGGCTTTA
CAGAAGAACGGGTTCAACGCGCTGGACCAGGACCTCCTACCACGCAGCCA
TCTCGAGTTTCAGCTTCGCCTCTGGTGGGCGAACTGGAGGGGCAAGATAT
GAGGCTGCGTCCACGAGTAAGGAGACGCCATCGGCGAACAGAAGTGCGAG
CGGGTCGGGAGTGCTCGAGTGGTGGGCTTGCTGGGATGGGTAGGGTGCTT
TTGTCAAGCGATGCTCAGGAGGGGAGTTCAGCGACCGGCGGGAAAGCCCA
GTCGATTGGCCGGCTGTACGATACGGTGGAGTAGACCATGTCTAAAAAAT
GGATTTCTAGCGCGCAAAGAAAACTGCGCACTGTCCAGTGCCACTCACGA
AAGAAAATTTTCCTGCGATTGCCTTGAGGCACGTTATCCCTGGACACACA
CTCGGGCTAATTGTCTGCGTACTTTGACGTCTGGCCCATTGC
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Coding sequence (CDS) from alignment at CM002461.1:775291..776932-

>rna3596 ID=rna3596|Name=rna3596|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002461.1:775291..776932- (Nannochloropsis gaditana)
ATGCTTCCATTCTTGCGAACAGCATGTTTCAATCGCACAGTACGTCGCCA
TCCTCCACTCGCCTTGCTAAAATCACTAATGATAACCAGCCCTGCGCGAC
CCCGTCTTGCTGCCTTCTCGACCAAGTCAAGCGGGCCAGACCCCGCCAAT
CACGGCCAGTACTGCGTGGAACTGGTCAAGCAGCATGATTTCGACGCCTA
TCTATGCGGATTGCTTGTCCCGAGATCCTCGCGGCGGGCCTACTTTGCAC
TGCGGGCATTCAATGTCGAAACGGCCCTAATCAAAGACGTGGCCAGGGGC
AACGCTCTTCCCGGACAGATGCGCATGCAATGGTGGAGAGAAGTTATAAG
CGGGATTTACCAAGGAAAGTCCCCCGCGCATCCCGTAGCACGCGCCCTGT
GCGAAGCAGTACAAGCCCACAATCTGACGCGGCGATGGCTGGACCGGCTA
TTGGAGGCCCGCGAGGGGGACCTCGGGAACATCCAGCCGACGCGCATGGA
GGAGCTGGAGGACTACGCCGAGAACACGGCGTCCTCTCTACTCTACCTGA
CACTGGAGGCTTTGCACGTCCGCCACCCCACCGCGGACCACGCTGCCAGC
CACGTGGGCCGGGCCACTGGGATCGCCACCGTCCTCCGGGCCACTAAGTT
CCACGCCTCCCACCAAAGCCTGTACGTCCCCCTCGAGATCCAGCGAGAGT
TCAAAGTAAATGTGAACGACATCCTGCGGGGACCTGAGTCCCCCGAAGCG
GCGCAAGCGCTCTCGGATATGTTCTTCGAGGTCGCCACGCAGGCTCACCT
TCACATGGAGCACGCGCGGGAGATGCTCGCCTCCCCGCCCCCGTCCTCCA
GCGGCCCCTTGCCCCGTAATACAATCACTGCACTCCTACCTGCCGTCCGT
ACCACCATGTATCTCAAGGCTTTACAGAAGAACGGGTTCAACGCGCTGGA
CCAGGACCTCCTACCACGCAGCCATCTCGAGTTTCAGCTTCGCCTCTGGT
GGGCGAACTGGAGGGGCAAGATATGA
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Synonyms
Publications