EWM27096.1, cds3587 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|585109273|gb|EWM27096.1| (isoprenoid biosynthesis enzyme [Nannochloropsis gaditana]) HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0 Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
Query: 1 MLPFLRTACFNRTVRRHPPLALLKSLMITSPARPRLAAFSTKSSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGKI 341
MLPFLRTACFNRTVRRHPPLALLKSLMITSPARPRLAAFSTKSSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGKI
Sbjct: 1 MLPFLRTACFNRTVRRHPPLALLKSLMITSPARPRLAAFSTKSSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGKI 341
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|321476738|gb|EFX87698.1| (hypothetical protein DAPPUDRAFT_306430 [Daphnia pulex]) HSP 1 Score: 239.58 bits (610), Expect = 8.850e-74 Identity = 122/293 (41.64%), Postives = 186/293 (63.48%), Query Frame = 0
Query: 50 NHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKD-VARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGKI 341
N YC ELV++HD++ +L LL+P++SR++ A+RAFNV A ++D V++G GQMRM++W E + +YQ PA VA L EAVQ HNL++RWL RL+ +RE L + + ++EDYAE++ SS+LYLTLE+L++R +DHAASH+GRA G+ T+LRA +++ Q +YVPL++ + KV+ ND LRG + + + D+ F+VA+ A+ H++ AR ++ P + AL+P + YL L+ FN D L R++L +LWW +RGKI
Sbjct: 35 NSFLYCQELVRKHDYENFLAALLLPQASRQSTIAVRAFNVSLAQVQDQVSQGTI--GQMRMKFWSETLEAVYQNTPPAQLVALQLYEAVQRHNLSKRWLQRLISSRENHLSSKAFQSLSKVEDYAEHSVSSVLYLTLESLNIRKVDSDHAASHIGRAQGLVTLLRAIPYNSKRQQVYVPLDLLVQHKVSQNDFLRGSDDKK----VKDLIFDVASTANAHIQKARTIIPKVPSEAK--------IALMPLISVDSYLDQLRAADFNVFDPKLSQRNNL-LPWKLWWNKFRGKI 312
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|1191064071|ref|XP_020910435.1| (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like [Exaiptasia pallida]) HSP 1 Score: 233.417 bits (594), Expect = 2.975e-71 Identity = 119/302 (39.40%), Postives = 186/302 (61.59%), Query Frame = 0
Query: 39 FSTKSSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGK 340
F + S ++ QYC+++V++ D++ +LC LL+P+ +++ FA+RAFNVE A I+D + G+ RM +WR+ + +Y+G+ P HPVA AL EAV+ HNL++RW RL++ARE +L + ++ LEDY EN+ SS+LYL LE+ ++ ADHAASH+G+A GI T+LRA + A+ + +Y+P +I + +V+ DI+RG A+Q+L D+ +E+ + A+ HM AR S +P+ I LLP V YL +QK FN D L R++L L+L +GK
Sbjct: 25 FCSNYSSNSIQSNAQYCIQIVRRMDYENFLCTLLIPKKFQKSAFAVRAFNVELAQIRDAVNDKQI-GKARMLFWRDCLEQVYKGQPPQHPVAMALTEAVEKHNLSKRWFTRLIDARETNLEDKPHQDIKSLEDYNENSVSSVLYLILESSGIKDVHADHAASHIGKAIGIVTLLRAAPYLANQRKVYIPSDILIKHEVSHQDIIRG----NASQSLKDVVYELXSTANTHMSTAR--------SFQSKVPKAAIKTLLPGVSCQNYLDKVQKADFNMFDNSLRERNNL-LPLQLLKQVLKGK 312
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|1191045047|ref|XP_020900093.1| (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like [Exaiptasia pallida]) HSP 1 Score: 231.491 bits (589), Expect = 1.522e-70 Identity = 117/289 (40.48%), Postives = 182/289 (62.98%), Query Frame = 0
Query: 52 GQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGK 340
QYC+++V++ D++ +LC LL+P+ +++ FA+RAFNVE A I+D + G+ RM +WR+ + +Y+G+ P HPVA AL EAV+ HNL++RW RL++ARE +L + ++ LEDY EN+ SS+LYL LE+ ++ ADHAASH+G+A GI T+LRA + A+ + +Y+P +I + +V+ D++RG A+Q+L D+ +E+A+ A+ HM AR S +P+ I LLP V YL +QK FN D L R++L L+L +GK
Sbjct: 38 AQYCIQIVRRMDYENFLCTLLIPKKFQKSAFAVRAFNVELAQIRDAVNDKQI-GKARMLFWRDCLEQVYKGQPPQHPVAMALTEAVEKHNLSKRWFTRLIDARETNLEDKPHQDIKSLEDYNENSVSSVLYLILESSGIKDVHADHAASHIGKAIGIVTLLRAAPYLANQRKVYIPSDILIKHEVSHQDVIRG----NASQSLKDVVYELASTANTHMSTAR--------SFQSKVPKAAIKTLLPGVSCQNYLDKVQKADFNMFDNSLRERNNL-LPLQLLKQVLKGK 312
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|723557075|ref|XP_010300390.1| (PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6, partial [Balearica regulorum gibbericeps]) HSP 1 Score: 230.335 bits (586), Expect = 1.806e-70 Identity = 125/295 (42.37%), Postives = 176/295 (59.66%), Query Frame = 0
Query: 44 SGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWR 338
S P P QYC ELV++ D++ +LC LL+P SR + FALRAFNVE A IKD + G MRMQ+WRE + IY P PVA L AV+ HNLT+ W ++++ RE +L + ++ELE YAENT S+LLYLTLE L VR ADHAASH+G+A GI T LRAT +H++ Q +++P++I V+ D +RG + + + D+ +++A+QAH+H+EHAR S S +P A V YL ++K FN + L +S L LRL+ +W+
Sbjct: 1 SRPAPEGEVQYCAELVRKRDYEGFLCSLLLPAESRTSAFALRAFNVELAQIKD-SITQKTTGLMRMQFWREAVEDIYCDNPPHQPVATELWRAVKRHNLTKMWFMKIIDEREKNLDDRAYRNIQELETYAENTQSALLYLTLEMLGVRDIHADHAASHIGKAQGIVTCLRATPYHSTRQKVFLPMDICMLHGVSQEDFIRGKQE----KNVRDVIYDIASQAHIHLEHAR--------SFSKKVPVKAYPAFFCTVALDDYLCNMRKVDFNIFNPSLQKKSTL-LPLRLYIRSWK 281
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|532086006|ref|XP_005328725.1| (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Ictidomys tridecemlineatus]) HSP 1 Score: 231.491 bits (589), Expect = 2.376e-70 Identity = 127/308 (41.23%), Postives = 187/308 (60.71%), Query Frame = 0
Query: 31 PARPRLAAFSTKSSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWR 338
PA R + +T SGP + YC+EL+++ D++ YLC LL+P SR + FALRAFNVE A IKD A+ G MRMQ+W++ + IY P PVA L +AV+ HNLT+RWL ++++ RE +L + ++ELE+YAENT SSLLYLTLE L ++ ADHAASH+G+A GI T LRAT +H S + +++P++I + V+ D LR ++ + + D+ +++A+QAHLH++HAR S +P A L V YLK +Q+ F+ L ++ L L L+ +WR
Sbjct: 40 PAVTRRSVVAT--SGPGVSGTDHYCLELLRKRDYETYLCSLLLPAESRSSAFALRAFNVELAQIKDSVSEKAI-GLMRMQFWKKTVEEIYHDNPPHQPVAIELWKAVKRHNLTKRWLMKIIDEREKNLDDKAYRNIQELENYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGSRRKVFLPMDICMQHGVSQEDFLRRNQN----KNVRDVIYDIASQAHLHLKHARSFHKS--------VPVKAFPAFLQTVSLEHYLKKIQQVDFDIFHPSLQQKNTL-LPLSLYIQSWR 331
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|634831514|ref|XP_007933047.1| (PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Orycteropus afer afer]) HSP 1 Score: 231.491 bits (589), Expect = 2.461e-70 Identity = 123/298 (41.28%), Postives = 181/298 (60.74%), Query Frame = 0
Query: 43 SSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGK 340
+SGP ++ YC+EL+++ D++ YLC LL+P SR A FALRAFNVE A +KD + GQMRMQ+W+ + IY P PVA L +A++ HNLT+RWL ++++ RE +L + ++ELE YAENT SSLLYLTLE L ++ ADHAASH+G+A GI T LRAT +H S + +++P++I V+ D LR + + + D+ +++A+QAHLH++HAR S +P A LP V YLK +Q+ F+ L ++ L L L+ +WR +
Sbjct: 49 ASGPGASSTDLYCLELLRKRDYEGYLCSLLLPAESRSAAFALRAFNVELAQVKDSVSEKTI-GQMRMQFWKNTVEDIYCDSPPHQPVAIELWKAIKRHNLTKRWLMKIIDEREKNLDDKMYRNIQELETYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGSRRKVFLPMDICMLHGVSQEDFLRKSQD----KNVRDVIYDIASQAHLHLKHARSFHKS--------VPVKAFPAFLPTVALEDYLKKIQRVDFDIFHPALQQKNPL-LPLSLYIQSWRKR 332
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|829806441|ref|XP_012628282.1| (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Microcebus murinus]) HSP 1 Score: 231.106 bits (588), Expect = 3.749e-70 Identity = 129/328 (39.33%), Postives = 197/328 (60.06%), Query Frame = 0
Query: 14 VRRHPPLALLKSLMITSPARPRLAAFSTKS-SGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGK 340
+RR PP L ++ + P P ++ S + SGP P+ G YC+EL+++ D++ YLC LL+P SR + FALRAFNVE A +KD + G MRMQ+W++ + IY P PVA L +AV+ HNLT+RWL ++++ RE +L + ++ELE+YAENT SS+LYLTLE L ++ ADHAASH+G+A GI T LRAT +H S + +++P++I V+ D LR + + + ++ +++A+QAHLH++HAR S +P + A L V YLK +Q+ F+ L ++ L L L+ +WR +
Sbjct: 21 LRRRPPWGL-RARVQRMPG-PTVSGRSVAAASGPGPSGTGHYCLELLRKRDYEGYLCSLLLPAESRSSAFALRAFNVELAQVKDSVSEKTI-GLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLTKRWLMKIIDEREKNLDDKPYRNIQELENYAENTQSSVLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGSRRKVFLPMDICMLHGVSQEDFLRRNQD----KNVRNVIYDIASQAHLHLQHARSFHKS--------VPVKALPAFLQTVSLEDYLKKIQRVDFDIFHPSLQQKNTL-LPLSLYIQSWRKR 332
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|507624431|ref|XP_004697524.1| (PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Echinops telfairi]) HSP 1 Score: 230.72 bits (587), Expect = 5.183e-70 Identity = 135/332 (40.66%), Postives = 193/332 (58.13%), Query Frame = 0
Query: 13 TVRRHPPLALLKSLMITSPARPRLAAFSTKS----SGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGK 340
R PP + L SP P LA S +S SGP + YC+EL+++ D+++YLC LL+P SRRA FALRAFNVE A +KD + G MRMQ+W+ + +YQ P PVA L +A++ HNLT+RWL R+++ RE +L + ++ELE YAENT SSLLYLTLE L ++ ADHAASH+G+A GI T LRAT +H S + +++P++I V+ D LR + + + D+ +++A+QAHLH++HAR S +P A L V YLK +Q+ FN L ++ L L L+ +WR +
Sbjct: 20 VCRPRPP----QELRARSPRLPELAV-SGRSVAALSGPGASGSDLYCLELLRRRDYESYLCSLLLPAESRRAAFALRAFNVELAQVKDSVSEKPI-GLMRMQFWKTTVEDLYQDNPPHQPVALELWKAIKRHNLTKRWLLRIIDEREKNLDDKVYRNIQELETYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGSRRKVFLPMDICMLHGVSQEDFLRKNQ----GKNVRDVVYDIASQAHLHLKHAR--------SFHKNVPLKAFPAFLQTVALEDYLKKIQRVDFNIFHPTLQQKNTL-LPLSLYIQSWRKR 332
BLAST of EWM27096.1 vs. NCBI_GenBank
Match: gi|1012266488|ref|XP_015980900.1| (PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Rousettus aegyptiacus]) HSP 1 Score: 230.72 bits (587), Expect = 5.309e-70 Identity = 123/298 (41.28%), Postives = 181/298 (60.74%), Query Frame = 0
Query: 43 SSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGK 340
+SGP + QYC+EL+++ D++ YLC LL+P SR + FALRAFNVE A +KD + G MRMQ+W++ + IY P PVA L +AV+ HNLT+RWL ++++ RE +L + ++ELE+YAENT SSLLYLTLE L ++ ADHAASH+G+A GI T LRAT +H + + +++P++I V+ D LR + + + D+ +++A+QAHLH++HAR S +P A L V YLK +Q+ F+ L RS L L L+ +WR +
Sbjct: 52 ASGPGASGTDQYCMELLRKRDYEGYLCSLLLPAQSRSSAFALRAFNVELAQVKDSVSEKTI-GLMRMQFWKKTVDDIYSDNPPHQPVAIELWKAVKRHNLTKRWLMKIIDEREKNLDDKAYRNIQELENYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGTRRRVFLPMDICMLHGVSQEDFLRKNQD----KNVRDVIYDIASQAHLHLKHARTFHKS--------VPVKAFPAFLQTVTLEDYLKKIQQVDFDIFHPSLQQRSTL-LPLSLYIQSWRKR 335 The following BLAST results are available for this feature:
BLAST of EWM27096.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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