EWM27090.1, cds3576 (CDS) Nannochloropsis gaditana

Overview
NameEWM27090.1
Unique Namecds3576
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:750789..750974 +
Alignment locationCM002461.1:752576..752617 +
Alignment locationCM002461.1:752817..753065 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27090.1
Producttransmembrane protein 167 precursor
Orig transcript idgnl|cribi|Naga_100046g31.5129.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:750789..750974 +
CM002461.1supercontigCM002461.1:752576..752617 +
CM002461.1supercontigCM002461.1:752817..753065 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009653DUF1242
Homology
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|585109267|gb|EWM27090.1| (transmembrane protein 167 precursor [Nannochloropsis gaditana])

HSP 1 Score: 324.709 bits (831), Expect = 1.486e-112
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MILFVRTFDVKTAPKRIFEGELGVSFCNRLVRCMCGQTLRKATCLIVRPRTKWRQPSAEKNTHRRGQLVRLVWDIMSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFFKKN 158
            MILFVRTFDVKTAPKRIFEGELGVSFCNRLVRCMCGQTLRKATCLIVRPRTKWRQPSAEKNTHRRGQLVRLVWDIMSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFFKKN
Sbjct:    1 MILFVRTFDVKTAPKRIFEGELGVSFCNRLVRCMCGQTLRKATCLIVRPRTKWRQPSAEKNTHRRGQLVRLVWDIMSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFFKKN 158          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|676383087|ref|XP_009034822.1| (hypothetical protein AURANDRAFT_23438 [Aureococcus anophagefferens] >gi|323454102|gb|EGB09972.1| hypothetical protein AURANDRAFT_23438 [Aureococcus anophagefferens])

HSP 1 Score: 91.6633 bits (226), Expect = 1.771e-21
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRH------EGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSAIFDFSSL+TV+LL I TCTY+R  R ++FD   SAD   + H       G+ G CWKASRIGER S +V +    MA H+L F
Sbjct:    1 MSAIFDFSSLVTVLLLIICTCTYVRAMRPSVFDGGLSADDLASPHLSYKRRSGIRGACWKASRIGERLSPYVSVVVAAMAFHILLF 86          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|635363886|emb|CCI47621.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 88.1965 bits (217), Expect = 4.053e-20
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSA+F    LITV+LLFI TC+Y+R    T+FD     +    +HEGL G CWKASRIGERKS +V  A + MA+H LFF
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDR----NQQPGKHEGLSGLCWKASRIGERKSPYVAGALIVMAMHTLFF 76          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|301092809|ref|XP_002997256.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|301095583|ref|XP_002896891.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|23394416|gb|AAN31496.1| unknown [Phytophthora infestans] >gi|262108538|gb|EEY66590.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111437|gb|EEY69489.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 87.8113 bits (216), Expect = 4.667e-20
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSA+F    L+TV+LLFI TCTY++    T+FD          +HEGL G CWKASRIGERKS++V  A V MAVH LFF
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLP----GKHEGLGGLCWKASRIGERKSQYVASALVVMAVHTLFF 76          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|325187130|emb|CCA21670.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 87.8113 bits (216), Expect = 4.927e-20
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSA+F    LITV+LLFI TC+Y+R    T+FD     +    +HEGL G CWKASRIGERKS +V  A + MA+H LFF
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDR----NQQPGKHEGLSGLCWKASRIGERKSPYVAGALILMALHTLFF 76          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|675213683|ref|XP_008915726.1| (hypothetical protein PPTG_19126 [Phytophthora parasitica INRA-310] >gi|566032350|gb|ETI55261.1| hypothetical protein F443_02055 [Phytophthora parasitica P1569] >gi|567968011|gb|ETK93165.1| hypothetical protein L915_03609 [Phytophthora parasitica] >gi|567996472|gb|ETL46582.1| hypothetical protein L916_03554 [Phytophthora parasitica] >gi|568025716|gb|ETL99720.1| hypothetical protein L917_03473 [Phytophthora parasitica] >gi|568058119|gb|ETM54764.1| hypothetical protein L914_01952 [Phytophthora parasitica] >gi|568084040|gb|ETM98985.1| hypothetical protein PPTG_19126 [Phytophthora parasitica INRA-310] >gi|570336047|gb|ETO83995.1| hypothetical protein F444_02066 [Phytophthora parasitica P1976] >gi|570960086|gb|ETP25065.1| hypothetical protein F441_02021 [Phytophthora parasitica CJ01A1] >gi|570996469|gb|ETP53068.1| hypothetical protein F442_02008 [Phytophthora parasitica P10297])

HSP 1 Score: 87.4261 bits (215), Expect = 6.677e-20
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSA+F    L+TV+LLFI TCTY++    T+FD          +HEGL G CWKASRIGERKS++V  A V MAVH LFF
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLP----GKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFF 76          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|970649035|gb|KUF88410.1| (kish-A protein [Phytophthora nicotianae])

HSP 1 Score: 87.0409 bits (214), Expect = 1.076e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSA+F    L+TV+LLFI TCTY++    T+FD          +HEGL G CWKASRIGERKS++V  A V MAVH LFF
Sbjct:    1 MSALFSLHGLLTVILLFICTCTYIKMKFPTLFDRGQLP----GKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFF 76          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|953493065|emb|CEG45011.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 87.4261 bits (215), Expect = 1.098e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            MSA+F+   L+TV+LLFI TCTY++    T+FD          +HEGL G CWKASRIGERKS +V  A V MAVH LFF
Sbjct:   20 MSALFNLQGLLTVILLFICTCTYIKMKFPTLFDRGQMP----GKHEGLGGLCWKASRIGERKSPYVAGALVLMAVHTLFF 95          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|673036598|ref|XP_008872260.1| (hypothetical protein H310_08335 [Aphanomyces invadans] >gi|574471826|gb|ETV98832.1| hypothetical protein H310_08335 [Aphanomyces invadans])

HSP 1 Score: 86.6557 bits (213), Expect = 1.498e-19
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            M+A+F+F+ ++T+VLL I TCTY+R    TIFD          +HEG  G CWKASRIGERKSE+V    + MAVH LFF
Sbjct:    1 MTALFNFTGMLTMVLLIICTCTYIRLKMPTIFDRGQLP----GKHEGFTGLCWKASRIGERKSEYVAALLLAMAVHRLFF 76          
BLAST of EWM27090.1 vs. NCBI_GenBank
Match: gi|695466993|ref|XP_009539527.1| (hypothetical protein PHYSODRAFT_534932, partial [Phytophthora sojae] >gi|348665185|gb|EGZ05018.1| hypothetical protein PHYSODRAFT_534932, partial [Phytophthora sojae])

HSP 1 Score: 85.1149 bits (209), Expect = 5.106e-19
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   77 SAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFF 155
            SA+F    L+TV+LLFI TCTY++    T+FD          +HEGL G CWKASRIGERKS++V  A V MAVH LFF
Sbjct:    1 SALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLP----GKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFF 75          
The following BLAST results are available for this feature:
BLAST of EWM27090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109267|gb|EWM27090.1|1.486e-112100.00transmembrane protein 167 precursor [Nannochlorops... [more]
gi|676383087|ref|XP_009034822.1|1.771e-2153.49hypothetical protein AURANDRAFT_23438 [Aureococcus... [more]
gi|635363886|emb|CCI47621.1|4.053e-2055.00unnamed protein product [Albugo candida][more]
gi|301092809|ref|XP_002997256.1|4.667e-2056.25conserved hypothetical protein [Phytophthora infes... [more]
gi|325187130|emb|CCA21670.1|4.927e-2055.00conserved hypothetical protein [Albugo laibachii N... [more]
gi|675213683|ref|XP_008915726.1|6.677e-2056.25hypothetical protein PPTG_19126 [Phytophthora para... [more]
gi|970649035|gb|KUF88410.1|1.076e-1956.25kish-A protein [Phytophthora nicotianae][more]
gi|953493065|emb|CEG45011.1|1.098e-1956.25Uncharacterized conserved protein [Plasmopara hals... [more]
gi|673036598|ref|XP_008872260.1|1.498e-1953.75hypothetical protein H310_08335 [Aphanomyces invad... [more]
gi|695466993|ref|XP_009539527.1|5.106e-1955.70hypothetical protein PHYSODRAFT_534932, partial [P... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3585rna3585Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications