rna3585, rna3585 (mRNA) Nannochloropsis gaditana

Overview
Namerna3585
Unique Namerna3585
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1176
Alignment locationCM002461.1:750789..753065 +

Link to JBrowse

Properties
Property NameValue
Producttransmembrane protein 167 precursor
Orig transcript idgnl|cribi|Naga_100046g31.5129.mrna
Orig protein idgnl|cribi|Naga_100046g31.5129
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:750789..753065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g31gene3452Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3585rna3585-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27090.1cds3576Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3585 ID=rna3585|Name=rna3585|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp
ATGAAGACACCCAGCTTTTTGTTTTTGGCCTTCGTACTCCTCATTGCCCA
TGTTGCCGCCTCGCGCCTCCAAGGCTCAACATTCACTTCCATTCAAACAC
TGACACAATTTCACGACTCATCCCGTCAATTCATATTGGATGGACGCCAA
CTTGCCATTCCTTTGCCCGCACACGTTCTCCCGCCACTGGCTATCGTTGG
AGGGCTGGTCCAAGGCATTGGGAACTCGTTGAGGCGACTTCAAGAGGGTA
CGATAGACCTGTGGGGTAACACGAAGCAGCTAGGTGGGCTGAAGAAGCGC
TTTGCCCGCGGAGAGACGTTGACGTTTCCGGAATATAATTTGATGCAGAA
GACGAGCGGTGACATAGCGAAATTTGTCGGCCTGGCGCTTTTCACAATGA
GTAAACCGGAATTTACTCCCTTCCTCTGCTCATTCTTCCCCGCCGTTGTG
CCCTCCACGTATCTCAATTCCGACGAGAAGCTCCAACGTTGTCAGCAACG
AAACTTCGCGCGGGTCCGTGGCGTGGTAACGCACTTAATGAGTCTGCAGC
AAGAGGCGGTGGCCCCGCACAGGAAGGAGAATGATCGCATGCGGCACTTG
CGGACCATGGAGCGATTGCTGCACACCACCACCAAGGCGGGTCCGGGAAA
AGCGCTGAAGCAGGTGGGAGATCTTGAGTATGTGCTCTTCTGCCGCCCAA
AAAGGGATGGCAAGGGTCGGCAGAAGGCGGACTTGCGTGCTGTTCCTCGG
CCGTTCCTAGTTTCCGTTTGCAACGCGATAGGCATGTTTCACAAATTCAT
TCCAGCGGCGGGTCTCAGAACCATGCTCAGCGATTATCTCTGGAAGATTG
ACGAGAGCGACCAGGTGCTGCTTAACACAAACGTCGACAAGCTGGGAAGG
GACGATTTGCTCGACGCCTGTGCCCAGCGGGCCCTCTCTTTGGGCGACGC
CTCCCCTGACGCTATGCGAGCGAACCTTAAGTCGTATTTGAAGTGCGTAT
CCCGCCCAAGCCTGGCCCCACCAGTAGTAAGGAAAAAGGAAAGCGAGCAA
GAGGGGAAAGTGGTGGCGCTGAACGAGAATAATATGCGCTTTGCACTTTT
AGGTTTGAATATGGTGGGATTAGTGAGGGACGCAAAGGAAAATAGTGCCT
TGCGAGCTCTTTTTGGTTGTACTTGA
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protein sequence of rna3585

>rna3585-protein ID=rna3585-protein|Name=rna3585|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MILFVRTFDVKTAPKRIFEGELGVSFCNRLVRCMCGQTLRKATCLIVRPR
TKWRQPSAEKNTHRRGQLVRLVWDIMSAIFDFSSLITVVLLFIVTCTYLR
GFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAV
HVLFFKKN
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mRNA from alignment at CM002461.1:750789..753065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3585 ID=rna3585|Name=rna3585|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp|location=Sequence derived from alignment at CM002461.1:750789..753065+ (Nannochloropsis gaditana)
ATGATACTTTTTGTGCGAACATTTGATGTTAAAACAGCACCGAAGCGCAT
TTTTGAGGGCGAGCTTGGAGTGTCTTTTTGCAACCGCCTTGTAAGATGCA
TGTGCGGGCAAACTCTCAGAAAAGCAACTTGCTTGATCGTGCGCCCAAGA
ACTAAATGGCGACAGCCCTCAGCGGAGAAAAATACGGTGCGAAGAGCCCG
GAGACTGACGAAATGTTTCTTCAAGCGCGTTTTTGCTTCCCTcactgccc
ctccttttACGTTTCCAGTtccatctttctcttctcctgaTTCCTACTCA
TCTATTCTCTGTAATAAGTACATGAGGTTTTGTGTGATTTCTTCTCATTT
GGTCTATTTGTCAGCACAATTTGTCCTGTTTCCTGTGATCAGCAACTCGA
CGATGTCCTCGTGACCTTTCATCCGCGCGTAAAACATGGGTGTGTGCCCG
TTCGCGTCACAATCCCAAGCAGATTTTCCTAATAAATGATTGGAGAGAAA
ATACGAAATCCCTTCACGGTGCCCTTGCATTGCTGCAATGTGCAAGACGC
CCACGCCATCCTGGTCCACATGCATGGGGTCGGCCCCTCGGGCGAGAAGT
AGAGAAATGAGTCTTTCAGATGGCTGGCGGCcgtagagggagaagaggag
aggagtggAGCCTCGGTTGTTAGGTGCATTggcaagaggaggataagTGT
CCGTGGTGTCTTGAGAAATAAGGTATTCTGCGCACTGCCCGGATGTGTTG
ACGAGAAAACTGAGTTAAAATTTGACAGATATTAAAAGTCATATAGATCC
CTGCCACACGGCAGGATGAtcaggaagaagcaggacaCAGTTCGATCTCT
TTTATATTTATCCCTATAATCTTACTTCGTTACCTCTTCATTGCCCGTTA
TGCAAGTTTCATGAAGAGGTGTATTTCCATAGACATTGCCCTGACGAGCG
CAGCATCCGGTGAGAGGGGGTGTCACATCTAAGGTGGAGTGACTCACAGG
AGGTACCATTCCTTGACCTGACTGATACTCATGACTTTCAATCAGAATTT
TTAATGTGGCTGCGTTTCCAGCCGATGCTGCGAAGTGCAAAGGTAAGTTG
AAATCTGGGAGGGTAAGGACACTCGTGACAGCGCCATGACTGATTAGTTC
CTGAACGATCTCGGCTGCTCGAGAGAAGGATAGCGACGCTGAAGGGACAT
GTGCAGCGGCGTGTAGAGCAgttttcccaccctcttggTTGTTGTACCAG
TTGGGGTTGGCGCCGGCCGCAAGTAGGGTTTTTACCTGATCTACATTGCC
ACCTTCCTTGCAAGCGTCAAAAAGTGCGATGTTGACTTCGCTGGATTGTT
GAAGAACATTGCTGTTGTGCATCAATAAATTAGGCATTATTTTATCTATC
TCTGTTacagagaaaaaagggaaaaaacgtGAATGAAAGATCTAATAATT
TGGATGAAAAAGCtcccgggggaaagggcgggaggttgcTTCCGTAACGG
TCGCGACGGGCGTgggctgctcctgctcctgcccccgtACTTCCACTCCA
TTGAGTCGGCACTTTAATATACATGCGTTTGTGTCTCATGGTTCCCTGGA
AAATGGCTTGAAGGCTACGTCTAGCCCTCCATTCTCGCGAATTATTCCAC
GCGGCACGAGTTCTGCTCGAACTTGACTAACGGAAGTCGCCAAAATGCAG
AAATTCTTCGACGTGAGCGCTAAATACTCACACAGCCACATAACGGGGAC
AGGCATTTCTTCGTGCTGAATCTTTCAGCAGGGATAGCACCGAAGGGGGC
AGCTTGTGAGATTAGTCTGGGACATTATGGTATGTACTTCGCGTATCCCA
CTGTTCCGCTTTCCTCAGTCCTTTCCATAGCAGACGGGAGCAAGTTCGGT
CTCGCTAGGGTATGATGTTCTCCATTAAAATTGCTCTTTCGTGCTCCGTT
GTGGGCTTAAAATTAAGTGAACGCTAGAACACTGACCCTAACCAGAAACA
TTCTACACCCATGCGCTCATTGCTGTAGTCTGCGATATTCGATTTCTCCA
GCCTGATCACcgttgtccttctcttcatcGTCACCTGCACATACCTGCGC
GGGTTCCGCTCTACCATTTTTGATAACGCTCCCTCCGCGGACGGGGCGAT
CAATCGGCACGAGGGCCTCTTGGGTTTCTGCTGGAAAGCGTCGCGGATTG
GTGAGCGGAAGAGTGAATGGGTCGGCCTAGCTTGTGTGGGCATGGCGGTG
CACGTGCtgtttttcaaaaaaaatTGA
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Coding sequence (CDS) from alignment at CM002461.1:750789..753065+

>rna3585 ID=rna3585|Name=rna3585|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at CM002461.1:750789..753065+ (Nannochloropsis gaditana)
ATGATACTTTTTGTGCGAACATTTGATGTTAAAACAGCACCGAAGCGCAT
TTTTGAGGGCGAGCTTGGAGTGTCTTTTTGCAACCGCCTTGTAAGATGCA
TGTGCGGGCAAACTCTCAGAAAAGCAACTTGCTTGATCGTGCGCCCAAGA
ACTAAATGGCGACAGCCCTCAGCGGAGAAAAATACGCACCGAAGGGGGCA
GCTTGTGAGATTAGTCTGGGACATTATGTCTGCGATATTCGATTTCTCCA
GCCTGATCACcgttgtccttctcttcatcGTCACCTGCACATACCTGCGC
GGGTTCCGCTCTACCATTTTTGATAACGCTCCCTCCGCGGACGGGGCGAT
CAATCGGCACGAGGGCCTCTTGGGTTTCTGCTGGAAAGCGTCGCGGATTG
GTGAGCGGAAGAGTGAATGGGTCGGCCTAGCTTGTGTGGGCATGGCGGTG
CACGTGCtgtttttcaaaaaaaatTGAATGATACTTTTTGTGCGAACATT
TGATGTTAAAACAGCACCGAAGCGCATTTTTGAGGGCGAGCTTGGAGTGT
CTTTTTGCAACCGCCTTGTAAGATGCATGTGCGGGCAAACTCTCAGAAAA
GCAACTTGCTTGATCGTGCGCCCAAGAACTAAATGGCGACAGCCCTCAGC
GGAGAAAAATACGCACCGAAGGGGGCAGCTTGTGAGATTAGTCTGGGACA
TTATGTCTGCGATATTCGATTTCTCCAGCCTGATCACcgttgtccttctc
ttcatcGTCACCTGCACATACCTGCGCGGGTTCCGCTCTACCATTTTTGA
TAACGCTCCCTCCGCGGACGGGGCGATCAATCGGCACGAGGGCCTCTTGG
GTTTCTGCTGGAAAGCGTCGCGGATTGGTGAGCGGAAGAGTGAATGGGTC
GGCCTAGCTTGTGTGGGCATGGCGGTGCACGTGCtgtttttcaaaaaaaa
tTGAATGATACTTTTTGTGCGAACATTTGATGTTAAAACAGCACCGAAGC
GCATTTTTGAGGGCGAGCTTGGAGTGTCTTTTTGCAACCGCCTTGTAAGA
TGCATGTGCGGGCAAACTCTCAGAAAAGCAACTTGCTTGATCGTGCGCCC
AAGAACTAAATGGCGACAGCCCTCAGCGGAGAAAAATACGCACCGAAGGG
GGCAGCTTGTGAGATTAGTCTGGGACATTATGTCTGCGATATTCGATTTC
TCCAGCCTGATCACcgttgtccttctcttcatcGTCACCTGCACATACCT
GCGCGGGTTCCGCTCTACCATTTTTGATAACGCTCCCTCCGCGGACGGGG
CGATCAATCGGCACGAGGGCCTCTTGGGTTTCTGCTGGAAAGCGTCGCGG
ATTGGTGAGCGGAAGAGTGAATGGGTCGGCCTAGCTTGTGTGGGCATGGC
GGTGCACGTGCtgtttttcaaaaaaaatTGA
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Synonyms
Publications