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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100046g26.5139.mrna |
| Orig protein id | gnl|cribi|Naga_100046g26.5139 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:743038..744490 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3578 ID=rna3578|Name=rna3578|organism=Nannochloropsis gaditana|type=mRNA|length=2692bp
GCATGCGATTTCTTATTATACCCCTCACGTCATGCACACCCTATTCTCCA
TCCGTGAAGGTGATTTCGAGGGCCTCTGTGAGTGATTTAAGTGGGGAGCC
AGCGGCACCGGGTCAAATAACCCCCCCCCTCCCACGGGGGTTCTTCCACT
CCAGTCTTCACTTCCTATTTGTCCACGCCATGGCGCGGCCTTTGCTCGTG
GATGAAGAATCACATGTAAACAGGAGCACCAACAATAGAAGTGTCAGTCA
TGAGTGCCAGAGCAAATGTAGCAACGGCACAACTGGCTCTCCACGGAGCT
CGCAGTACCTCGCCCGCCGCTCCCAGGTGCTCTGGACGGTGGTCTTCGCC
TCTGTCGCATTGTTCATTAAGCGCCTCCAACAAGACAGCCCAGCGTTAAT
CAACCCTCCTTACTGTGCATGGAGGTTTGTGGGAAATCACGACGCGTGGA
ATGTAGCTTTCCCGGACATGCGATCCTTGTATCATGTCATGCAGATCCAA
ATGAGCAAAGGGGATGAGTTCAAATTGGTCGCGGAGTCTTTCCCGTACGC
TCGATACTGCTCCTACCAAACGTACGATTTGCGGACGCTCATGTCGCACC
AGAGCCTGCGGGACGTGGACATCGTCCCTGATGCAAACGGACCCAACTGC
TACGCGAACCTGACCGCCGCCCAGGAGGGCCTGAGGCAGGGGGGCTACAC
GCTCTACATGACGGCCAGGGGCGATCAGAACTACACCAACGAGCTGCGTG
CGCTTCCTGATTCCATAGAGTCCGGTCAATTCGACCTTTTCTTCCGCATT
TACGTGGAGGAGGCTCTGCAAGGCCCGCCCCAGGCGCCATGGGGGCACCT
TCCTCCCTACGGGAAGGACCTGGCCTTCGAGTGGGGATGGGCGCCGCCAC
CCCGACTCTATGCTAAGCGCGCGCACCTGAAGGACGGAGAATGGCGCGAA
GTTCCCTTCTGCCAGTACCGTCGGCGGAAAGGGTTCAAGCTGCTGGCTTA
TCTTTCCGAGATCTGGCCGGCGCCCTCCCCCCCCTTCGCAGGCCACCCTG
CCGTGGCTCCCAATAAGGCGAACAATGTGTTTTTGCCCAAGTACACGGAC
CGTCAGGGCAAGTTCGCGAGTAAAGACGCGAACTACGTGGCGTCCGTGGC
GGAGCCCAGGCACGTCCGCAACGGGAGCGAGGCCATGCTCTGGGCGCGCG
TGACGGGCACTTTGCCGCGAGTCCCGGGCTCCCTCTACACCCCCCCCTAC
GTCGCCAACGCCACTGACTACGACGTCCGGTACGTGTCATTGTCCGCCGT
GCATCGGACCATTCCCTTCCGGAACCACGCGACGGTCGCCGACACGCAGA
TCACCGAGCACTACCAAAAACGCCTTCCCCCCGGAGTAGAGTGGGACCGT
AAATTTACGATATGGGTGGTGCCTCCGCAGGTGGAAAGCGCTTACCCCCG
GCAGGTGATGGACGAGAACCCCGTGATCATGAAGTGGGGCGCCTCCCTCT
TCGGGGGCGGGATTGTGGAGTACACGGGCCTGCTGTACCGGCAGGTGATG
GCGCGGAGCCAGGTAGTGGGCTTGGAACAAGGGGCATTGAGCGCGTCGGG
AGTGGTGAACATCGTGCCCGAGGCGTGCCAATCGGGTCAAGTGGGGCCAC
ACGGGGAGGGGGCGGACGCCGCCATGAAAGCGGGGGACCCACTGGAGATG
GAGCAGTTCTGCTGCAGCACAGAGGCGCCCATGGAGTGTTTTTTACCGGA
ATATGTGCGGTATCGCATGGGCCCGTACTACCCTCAAGTCGAGTACTTCA
CCGGGGGCCCGGAGGATGCTGCCTTGACGAGGCTGGAGCACTAGGGACAG
CCGAAAGGAAGGGGGAGGAGGACGAGGGAGGGAGCTCTCCGGGATCATGT
GAGATGATTTCTGATTGAGTTTTCGAGCCTTGGACAGGAATTAGAGGGCG
GGGGGACGAGAATGAAATCGAATCTCGGCAAGGTTCGCGGCCCGCTTCTC
TTGGTAGCCAGTTCCCAAACATGTAATTTAACGGCAGGTGCAGCGACAGC
TAAAAGAGCAACGCGATCCTAGACGCACATGTATGTACCTTATTTCCATT
TTCTGGAGGCGTCAGGTTGAATTTCCCGGAGGCATAAGGGTGGCCTAGGC
ATGATTGATATGACGTTTGTATGGACATGACAGGCGTGCGCCCAGCGTGG
GGGGTATGATTTGTACAGGTGGCAAAGAAGTGGGGGAAGGGGCTGGGGAG
GAGACATGCCGGTGTGTCCGGGCTCCGCCTGGCTGGTTATGAGCCAGCCT
TAAAATGGGATGTACCACATCCTCGCTTGGGCATCAATATGCTTATTGCG
CCTCATGCGGGCGCTCGGAGAGATCAGCTCATGGCATCAAGTGCTGGGAT
AGTAGAAAAGGAGAAACAGACGATGACGTGGGCGCGTCTGCGCTGACACG
CGTCGCTCTCGCGTGAGACTGGATGATTAGTACAATGTGGCTGCACAATG
AAATACAGGGACAGGGAGTCCCTTGCATGGGCGACAGCCGGATACGGGCG
CAGAGTAGGGCGAAAGACGATGTATGTAGTCCGAGGTCAGAGGCATTTCT
CGCTTGCGTCACTTTATGGCCTCTGGCGGGAGACTTGTCAAGTAATGAGG
ATAGAGAAAAAGAATCGATACTCATCCCATTAAGGACTTGAG back to topprotein sequence of rna3578 >rna3578-protein ID=rna3578-protein|Name=rna3578|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MSMEEHTTSFSESGRQGSDGGLTDVLKDDESEAAAAVASTATEEEDEGAP
SSQNVIPADSLANGFSVAKGFLASGWSQARKSIATLQDSEAVHKMREASK
PFVGAVVEGGKVVGDRLHHTAEAAKPGLEAVGRRVSGAVEHLSERTRPAL
EKAGETIKKTTKQVVDEGKPMVKKVGDFFNDNLGGKKGGGGGDGDPPTTV back to topmRNA from alignment at CM002461.1:743038..744490- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3578 ID=rna3578|Name=rna3578|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp|location=Sequence derived from alignment at CM002461.1:743038..744490- (Nannochloropsis gaditana)
ATGTCGATGGAAGAGCACACCACGTCTTTCTCCGAGTCGGGACGACAAGG
CAGTGACGGCGGTTTGACAGACGTGTTGAAGGATGACGGTGAGTCTCTGC
AAGCCTTCGCGTCCCCAGAGCAATCGTCTGCAAGAAGGAGGAAGCCGGAA
GAAAAAAGGCATAACTCTCAACTATCTTTATCCGAACGTATTACAGAGTC
CGAAGCGGCCGCGGCCGTGGCATCGACGGCTACGGAGGAAGAGGACGAGG
GCGCTGTAAGTAGAGAAGAAGGGGTGGCGTGGTGGGCCTGCTATGAAGAC
TCCTTACACATCTGCATATTCAAGGATACCGGTCCTTTTTTGCCCAAAGC
AATAGTGAAATATAATGCTTCTTGATGCGTATGGTGGATCTATCTCAAGG
ATAGATTTTTGAAATGTACCGCGCCCCGCGTCAATTCAAGTCGTTCCGTG
ATGTCAAACCTCTCACTGCATAAAGCTCCTTGCACCCATTCCCGCCCCTC
TTCCACCAGCAGCCTAGTAGCCAGAATGTCATTCCTGCGGACAGCCTCGC
CAATGGTTTCTCCGTGGCAAAGGGCTTTCTGGCCTCTGGATGGTCTCAAG
CTCGCAAGTCCATCGCCACGCTGCAAGACTCAGAGGCCGTGCACAAAATG
CGAGAGGCGTCGAAACCCTTCGTCGGGGCGGTGGTGGAGGGCGGCAAAGT
CGTCGGCGACCGACTTCATCACACGGCGGAGGCGGCCAAGCCAGGCTTGG
AGGCCGTAGGGAGGCGGGTGTCGGGGGCAGTAGAGCATCTGTCAGAGAGA
ACGCGGCCCGCCCTGGAGAAAGCCGGAGAGACGATCAAGAAGACGACGAA
GCAGGTGGTCGACGAGGGTAAACCCATGGTGAAGAAGGTAAGTCCCGTGG
ATGAGGCAGTAGTCAGGGGGAAGCAAGGGGGAGAGCGCAGCCAGTCACTG
CACTAGAGACATGTTTGCCCTTACAGCCCTGCATTTCCTCCTCACAACGT
CAGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGGAGG
GGGAGGGGACGGTGACCCTCCCACGACGGTGTAAAGCGTAAGGTATGGGC
GAGTCGATAGCTGGGTTGTAGAGTGTGGAGGGCGGTGGGAGGGATCGACG
AGGAGCTTTTTGGTCCGAGCCATGTAACAGAGACTCAAATGATTGGTGAA
CTTTCGTGATGCCGCATTTATCGAGAAAATAAAAAGCCGGGAGAACCGGG
GCGGAACGAAAATCTCGTGGAAAGTTGAACCATATTTTTATTTTTGTCTC
CACCCGGGGAGTAAGACTAATCTCACTGATTGGGTCACTCCAATTTATGT
CGCGGTACCCCTTCCTTTGTGGGGGACAATATCATGACCACGGCGCCAAA
CTCAAATATGGGAGCACACCCGGCGTCAAACCCAAAACATGGGAGCATCT
CCC back to topCoding sequence (CDS) from alignment at CM002461.1:743038..744490- >rna3578 ID=rna3578|Name=rna3578|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002461.1:743038..744490- (Nannochloropsis gaditana)
GTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGGAGGGGG
AGGGGACGGTGACCCTCCCACGACGGTGTAACCTAGTAGCCAGAATGTCA
TTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTGGCAAAGGGCTTTCTG
GCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGCCACGCTGCAAGACTC
AGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAACCCTTCGTCGGGGCGG
TGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTTCATCACACGGCGGAG
GCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCGGGTGTCGGGGGCAGT
AGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGGAGAAAGCCGGAGAGA
CGATCAAGAAGACGACGAAGCAGGTGGTCGACGAGGGTAAACCCATGGTG
AAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCGACGGCTACGGAGGAA
GAGGACGAGGGCGCTATGTCGATGGAAGAGCACACCACGTCTTTCTCCGA
GTCGGGACGACAAGGCAGTGACGGCGGTTTGACAGACGTGTTGAAGGATG
ACGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGGAGG
GGGAGGGGACGGTGACCCTCCCACGACGGTGTAACCTAGTAGCCAGAATG
TCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTGGCAAAGGGCTTT
CTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGCCACGCTGCAAGA
CTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAACCCTTCGTCGGGG
CGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTTCATCACACGGCG
GAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCGGGTGTCGGGGGC
AGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGGAGAAAGCCGGAG
AGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGAGGGTAAACCCATG
GTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCGACGGCTACGGAG
GAAGAGGACGAGGGCGCTATGTCGATGGAAGAGCACACCACGTCTTTCTC
CGAGTCGGGACGACAAGGCAGTGACGGCGGTTTGACAGACGTGTTGAAGG
ATGACGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGG
AGGGGGAGGGGACGGTGACCCTCCCACGACGGTGTAACCTAGTAGCCAGA
ATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTGGCAAAGGGC
TTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGCCACGCTGCA
AGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAACCCTTCGTCG
GGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTTCATCACACG
GCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCGGGTGTCGGG
GGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGGAGAAAGCCG
GAGAGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGAGGGTAAACCC
ATGGTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCGACGGCTACG
GAGGAAGAGGACGAGGGCGCTATGTCGATGGAAGAGCACACCACGTCTTT
CTCCGAGTCGGGACGACAAGGCAGTGACGGCGGTTTGACAGACGTGTTGA
AGGATGACGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGG
GGGAGGGGGAGGGGACGGTGACCCTCCCACGACGGTGTAACCTAGTAGCC
AGAATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTGGCAAAG
GGCTTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGCCACGCT
GCAAGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAACCCTTCG
TCGGGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTTCATCAC
ACGGCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCGGGTGTC
GGGGGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGGAGAAAG
CCGGAGAGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGAGGGTAAA
CCCATGGTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCGACGGCT
ACGGAGGAAGAGGACGAGGGCGCTATGTCGATGGAAGAGCACACCACGTC
TTTCTCCGAGTCGGGACGACAAGGCAGTGACGGCGGTTTGACAGACGTGT
TGAAGGATGACG back to top
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