EWM27089.1, cds3562 (CDS) Nannochloropsis gaditana

Overview
NameEWM27089.1
Unique Namecds3562
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:727623..729539 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27089.1
Productabc subfamily abcg
Orig transcript idgnl|cribi|Naga_100046g17.5128.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:727623..729539 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR017871ABC_transporter_CS
IPR027417P-loop_NTPase
IPR013525ABC_2_trans
IPR003439ABC_transporter-like
IPR003593AAA+_ATPase
Homology
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585109266|gb|EWM27089.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 1300.8 bits (3365), Expect = 0.000e+0
Identity = 638/638 (100.00%), Postives = 638/638 (100.00%), Query Frame = 0
Query:    1 MGTENMNFPLSSDNRSCPPWSIPVPDARRRRPAPGSYLPNQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTAMRA 638
            MGTENMNFPLSSDNRSCPPWSIPVPDARRRRPAPGSYLPNQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTAMRA
Sbjct:    1 MGTENMNFPLSSDNRSCPPWSIPVPDARRRRPAPGSYLPNQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTAMRA 638          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|553193487|ref|XP_005855786.1| (abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422293272|gb|EKU20572.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 802.357 bits (2071), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query:    1 MGTENMNFPLSSDNRSCPPWSIPVPDARRRRPAPGSYLPNQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLL 387
            MGTENMNFPLSSDNRSCPPWSIPVPDARRRRPAPGSYLPNQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLL
Sbjct:    1 MGTENMNFPLSSDNRSCPPWSIPVPDARRRRPAPGSYLPNQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLL 387          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585106190|gb|EWM24668.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 499.59 bits (1285), Expect = 6.140e-168
Identity = 258/550 (46.91%), Postives = 368/550 (66.91%), Query Frame = 0
Query:   86 MGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTA 635
            MG SGAGKTTLLEC++LR+R+F+G V ++     G++FT S LVHQ+E+L GF+T  EHLLFH  ARMS   + ++I ARV  V+++V L KC  T+VGG      +KGLSGGERKRL+IA ELLL PQ IFLDEP++ LDSVM+  +   L+ L  S RI+V A++H PSS++   F+HVLLLT DGRLA+HG    A+ Y SS L    P+ YNP+D  ++L+ + PG  A   +E+ + N  LV ++ AS             +     + +H+  + V G HAS+WTLF++NL R  +Q  R+ ++F L+G+V  ++G  FG LY+QQA S+WRNL+GLL+++VVA L+   L V++R PLDW +++REYF+G+NA GPYL+A+ + + P  YGP LL+  LYWMTG+   +  F+ FA        AS +M   V S SANP + L ILPAF+ PM++FSG LY+ +++P++L+WL  +SIVNY F+AL+  Q  +LP  L  + ++FV ++P+ +G ++ ML  M   F  LTY+ L+LRLR A
Sbjct:    1 MGPSGAGKTTLLECISLRNRKFEGAVHYDNRGPTGEFFTCSVLVHQKELLFGFMTPREHLLFHAIARMSKNHTIEQINARVEEVLQEVKLEKCADTIVGGTDPIYMRKGLSGGERKRLSIAAELLLAPQLIFLDEPSSGLDSVMSESIFGTLKDLTQSGRIVV-ASVHCPSSEMCQQFTHVLLLTFDGRLAYHGRQDAAIRYFSS-LSYQCPENYNPSDFYLKLISATPG--ADPAQEKARMNQ-LVAAYNASDM---------VRKTPLAPDETHKQFQMVFG-HASSWTLFKINLWRAFIQLQRDWVTFVLWGLVSALVGGLFGILYWQQARSNWRNLLGLLFSVVVANLFTSSLAVMMRFPLDWAIVVREYFSGSNAIGPYLVARFIVDAPMGYGPFLLITLLYWMTGMDSDIGKFVIFALTFISGNWASTSMGQYVSSFSANPFIGLTILPAFVAPMIMFSGILYERSSVPAWLSWLQTLSIVNYSFSALMIQQIHILPKPLALLVMQFVELNPDTMGWDIGMLWIMNFGFQILTYINLSLRLRFA 535          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585108726|gb|EWM26638.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 479.559 bits (1233), Expect = 2.792e-159
Identity = 263/596 (44.13%), Postives = 372/596 (62.42%), Query Frame = 0
Query:   40 NQLTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTA 635
            + L WH+ ++ V      P  K+  + ++IL  +AG++  G++TAIMG SG GKTTLLEC++LR+R+F G V ++G A  GD FT S LVHQ+E+L GF+T  E+L FHG ARM    +  +I+ R++ V+ D+ L KC  TLVGG      KKGLSGGERKRL IA E+LL P  IFLDEP++ LDSVM+  +   L+ LA   RI V+A++H PSS+   LFSH++LLT DGR+A+HG     + Y S+ LK   P+ YNPAD  ++L+   PG  A    +R    D L  +F  S   D  L +          +N HR L GV G  AS +T  +LN  R  L+  R+     L+G++  ++GL  G +Y QQA +SWRNL+GLL++LVVA ++M  L VI+R P +W +++RE ++G NA GPYL A     LP AYGP LLV  +YWMTG+ P+  A+L+FAG+      A   +   V SLS NPM+ + ILPAF+ PM++FSG LY  +T+P +L+W+  +S++NY F+AL+  Q  +LP     +   F++++  + G N+L L  M+     LTY  LT+RLR A
Sbjct:   24 HTLEWHVEAYMV------PAGKKG-EFRNILQGIAGKTESGQLTAIMGPSGCGKTTLLECISLRNRRFDGAVHFDGRAPGGDAFTVSVLVHQKELLFGFMTPREYLTFHGLARMEHTHTRAQIDQRIQEVLSDMKLEKCADTLVGGTDPFFQKKGLSGGERKRLAIAYEMLLAPSMIFLDEPSSGLDSVMSESIFQSLKDLADGGRI-VLASVHCPSSEACQLFSHLMLLTYDGRVAYHGPTLQGIGYFSA-LKYFCPEHYNPADFYLKLISFTPGAEAEGEVQRM---DLLNDAFQKS---DMRLMK------PLPTDNKHRGLAGVHGIKASTFTFLKLNFWRATLRLRRDKTFVVLWGIISFIVGLLLGIIYLQQAPASWRNLLGLLFSLVVADIFMGSLGVIMRFPSEWAIIVRECYSGVNAVGPYLFASFWGILPMAYGPFLLVTVMYWMTGMDPNFVAYLKFAGIYLSFDIACLELGQFVSSLSGNPMVGMTILPAFVAPMIMFSGVLYQKSTVPVWLSWMHHVSLINYSFSALMAEQIHILPENQANLLAAFIDLNKNSAGLNVLYLWIMSAALLLLTYFTLTVRLRNA 598          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585110259|gb|EWM27919.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 474.552 bits (1220), Expect = 1.169e-156
Identity = 262/631 (41.52%), Postives = 381/631 (60.38%), Query Frame = 0
Query:   38 LPNQLTWHIRSFKVGSQRCWPWTK-----RSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMS--------------------------DRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAAS--AYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTA 635
            + ++L WH+ SFKV  +R     K      +   K+IL  VAG +V GE+TAI+G SGAGKTTLLEC++LR+R F G V ++G+A  G +FT SA VHQ ++L GFLT  EHL FH  ARMS                          ++ S + +  RV  VI  V L KC  TL+GG     N KG+SGGERKRLTIATELL   + IFLDEP++ LDSVM+  +   L+ L    RI V+AT+H PSS+ + LFS+++LLT DGRLA+ G  + AL Y  + L    P  YNPAD ++ LV ++PG     +EE R+  D L  ++A S     +P LP           ++ H++L  V+GQ AS W  F+LNL RG LQ +R+ ++  L+  V  +IG  FG LY+Q AAS+WRNL+GL+++ VV  ++   L V++R P++W L++RE+ +GANA GPY++A+    LP +YGP+L+ + +YW TG+ P    +L F  +      +  ++   + S SANP++ + I+P F+TPM++FSG L + +++P +LAW+  +S+VNY F  L+  Q  +LP     V  +F+  +P  +G N+ ML  +T  F  LTY+ L +RLR +
Sbjct:   25 IQHKLEWHVESFKVQIRRSRAPGKGTASTTTQTTKTILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSRTAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQGRI-VIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAEPG--VPLQEELRRM-DALSLAYAQSFMKIQNP-LPA----------DDKHKALHDVRGQGASDWVFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQFIQFNPRKMGWNVGMLWILTAAFQVLTYVNLRVRLRAS 640          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|553189117|ref|XP_005854935.1| (atp-binding cassette [Nannochloropsis gaditana CCMP526] >gi|422294123|gb|EKU21423.1| atp-binding cassette [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 474.167 bits (1219), Expect = 1.331e-156
Identity = 262/631 (41.52%), Postives = 381/631 (60.38%), Query Frame = 0
Query:   38 LPNQLTWHIRSFKVGSQRCWPWTK-----RSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMS--------------------------DRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAAS--AYGDPELPERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTA 635
            + ++L WH+ SFKV  +R     K      +   K+IL  VAG +V GE+TAI+G SGAGKTTLLEC++LR+R F G V ++G+A  G +FT SA VHQ ++L GFLT  EHL FH  ARMS                          ++ S + +  RV  VI  V L KC  TL+GG     N KG+SGGERKRLTIATELL   + IFLDEP++ LDSVM+  +   L+ L    RI V+AT+H PSS+ + LFS+++LLT DGRLA+ G  + AL Y  + L    P  YNPAD ++ LV ++PG     +EE R+  D L  ++A S     +P LP           ++ H++L  V+GQ AS W  F+LNL RG LQ +R+ ++  L+  V  +IG  FG LY+Q AAS+WRNL+GL+++ VV  ++   L V++R P++W L++RE+ +GANA GPY++A+    LP +YGP+L+ + +YW TG+ P    +L F  +      +  ++   + S SANP++ + I+P F+TPM++FSG L + +++P +LAW+  +S+VNY F  L+  Q  +LP     V  +F+  +P  +G N+ ML  +T  F  LTY+ L +RLR +
Sbjct:   25 IQHKLEWHVESFKVQIRRSRAPGKGTASTTTQTTKTILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSRTAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQGRI-VIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAEPG--VPLQEELRRM-DALSLAYAQSFMKIQNP-LPA----------DDKHKALHDVRGQGASDWVFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQFIQFNPRKMGWNVGMLWILTAAFQVLTYVNLRVRLRAS 640          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|553193491|ref|XP_005855787.1| (atp-binding cassette subfamily member group wbc protein 2, partial [Nannochloropsis gaditana CCMP526] >gi|422293273|gb|EKU20573.1| atp-binding cassette subfamily member group wbc protein 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 421.779 bits (1083), Expect = 2.407e-142
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:  423 RNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTAMRA 638
            RNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTAMRA
Sbjct:    1 RNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTAMRA 216          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana])

HSP 1 Score: 436.032 bits (1120), Expect = 6.196e-142
Identity = 241/578 (41.70%), Postives = 354/578 (61.25%), Query Frame = 0
Query:   67 KSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSR----RILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQ---GQHASAWTLFRLNLRRGLLQTSRNSLSFW-LYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQ-QSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTA 635
            K IL D+AG++V GE TA+MG SGAGKTTL++C+ALR R F+G +  +G + + DYFT +  VHQ+E+    LT  EHL+FH   R+  +++  +   RV  VI +V L++C  T++GG G     KGLSGGERKRL+I TELL  P+ IFLDEPT+ LDSVM   V  LL  LA  +    R ++M  IH PSS+++S FSHVLLL   G +A+HGT      Y  S L   +P  YNPAD  + +V +KPG      E + K   W+V++FA          +R    ++   E +H +  GV    G  A      ++N+ R + Q+SR+  + + L GM++ ++G+ FG L+  QA SSWRNL+G+++ALVVA+L +C + V L+ P++W + +REY+ GANA GPY + + + ++PF    LLLV   YWM+GLT S A+F+++  +  L    S +   +  S SA+P+L L I P   TPM+LFSG LY+ +++P YL W+  IS+VNYGFAAL+  +  SL    +R + L F+ +D    GA +  L G+ + +   +++ L LR+R A
Sbjct:   65 KQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGG-GEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKS-LGYDVPPNYNPADFALEVVSAKPGA-----EVQGKTAVWIVENFA----------KRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLL-ILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYA 624          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 350.903 bits (899), Expect = 2.229e-108
Identity = 222/607 (36.57%), Postives = 332/607 (54.70%), Query Frame = 0
Query:   42 LTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSR-RILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSK--------PGG--GASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKA--CEENSHRSLRGVQGQHASAWTL-FRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQA-ASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLR 633
            L W+I  +++  ++     ++S+   ++L  +AG++  G   A+MG SG GKT+LL+CLALR+R F+G +T NG+A+ G YF  +  VHQ+E+    LTV EHL+FH    +S   S +E  ARV  V+E+V L+K     +GG G      G+SGGERKRL IATELL  P+ + LDEPT+ LDSVM   V  LL+ +A+   R LV+A IH PSS++F+L SHV LLT+ G LA+ G     LL+      R  P  +NPAD ++ L  +K        PGG  G             LV+S ++         +    RD A     N H+ + GVQG  AS W + FR NL R  L   R  +   +  ++   +GL FG LYFQQ    + RN  G L++L+V LL    + V +  P D+ +L+REY+AG N+   Y L + L   P +   +++    Y+M GL PS  AF  +  +  +   A+ ++  +  S SANP++ L ILP FITPM+LFSG LY+  ++P  L W+  IS++NY FA ++  Q   +    R   + F+ +        L+ L  +++++       L +R++
Sbjct:   75 LEWNISKYEIKLKK-----RKSL---TVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGG-GDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYR-CPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKL--VAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVK 669          
BLAST of EWM27089.1 vs. NCBI_GenBank
Match: gi|585102173|gb|EWM21831.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 304.679 bits (779), Expect = 2.407e-90
Identity = 194/584 (33.22%), Postives = 306/584 (52.40%), Query Frame = 0
Query:   67 KSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSRRILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGD----PELP-ERGSHRDKACEENSHRSLRGVQGQHASAWTLFRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQAAS--SWRNLVGLLYALVVALLYMCPLTVILRA-PLDWPLLLREYFAGANAAGPYLLAKILYELPFA-YGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQ---------SLLPAELRGVA-LKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLR 631
            K IL++VAG    G++ A+MG+SGAGK+T L+C++LR++QF G V  NG+     Y+  +  V+Q ++    +TV EHL FH   RM+     ++   RV +V+ +V +S C +T++GGPG     +G+SGGE+KRL   TELL  P  +F DEPT+ LDS M   V   +R+LA   +I +M  IH PSSQ F LF+H+LLL   GR+ ++G ++    Y SS L    P  +NPAD  +  +   P    ++    R ++ W     +  A G+     E+P E  + + KA           ++  HAS WT F   ++R +    R +       M   V+G+  GT+YF Q  +  S +N++GL + L++    M  +  +L+A P +  + +RE  +GAN    Y LA+ L ELP     P +  A +Y M  L P+   F  +   + L    + ++  M+ S++++  +   + P F+ PM LF+G L D  T+P +L WL   SI+ YG+  LI  Q          SL      G A + +V   P+ +G  + +L  + +IF  L + FLT +
Sbjct:  146 KEILSNVAGSVKSGQMMAVMGSSGAGKSTFLDCVSLRNQQFSGNVYINGKPADEKYYFMTGFVYQEDLFIPTMTVREHLTFHAMVRMNSDIPVEKRLERVEDVLMEVAMSHCPETIIGGPGT--GYRGISGGEKKRLAFGTELLNNPSIVFADEPTSGLDSFMTRGVCMTMRELADDGKI-IMCVIHQPSSQTFDLFTHLLLLAK-GRIVYNGPMATLQSYFSS-LGVICPHFHNPADFFINQISIVPTEQEASMA--RLQSLWDAYENSNLAAGNMAWKAEMPAEILNLKHKAVS---------MKHFHASTWTQFYYTMKRNIQNEFRRATDVKAKFMNSLVMGMILGTIYFGQTDTQESAKNIMGLFF-LIIMFQTMVSMFGVLQAFPSECKVFIRENLSGANRVSSYFLARTLSELPSTIIYPSIFAAIVYGMADLQPTAGRFYFYIFTIILVANCATSVGYMISSMTSHEAVAYALAPLFLMPMALFAGLLLDLNTIPVWLRWLDFFSIIKYGYQLLIINQYTDRELSCVGSLFCRWKTGTAVMNYVGTSPQKVGETMGILVALIIIFRLLAFFFLTRK 712          
The following BLAST results are available for this feature:
BLAST of EWM27089.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109266|gb|EWM27089.1|0.000e+0100.00abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553193487|ref|XP_005855786.1|0.000e+0100.00abc subfamily abcg, partial [Nannochloropsis gadit... [more]
gi|585106190|gb|EWM24668.1|6.140e-16846.91abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585108726|gb|EWM26638.1|2.792e-15944.13abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585110259|gb|EWM27919.1|1.169e-15641.52abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553189117|ref|XP_005854935.1|1.331e-15641.52atp-binding cassette [Nannochloropsis gaditana CCM... [more]
gi|553193491|ref|XP_005855787.1|2.407e-142100.00atp-binding cassette subfamily member group wbc pr... [more]
gi|585109183|gb|EWM27013.1|6.196e-14241.70white [Nannochloropsis gaditana][more]
gi|585106124|gb|EWM24607.1|2.229e-10836.57abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585102173|gb|EWM21831.1|2.407e-9033.22abc subfamily abcg [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3571rna3571Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications