EWM27084.1, cds3549 (CDS) Nannochloropsis gaditana

Overview
NameEWM27084.1
Unique Namecds3549
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:695741..696039 -
Alignment locationCM002461.1:694249..695611 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27084.1
Producthistidyl-trna synthetase
Orig transcript idgnl|cribi|Naga_100046g1.5123.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:695741..696039 -
CM002461.1supercontigCM002461.1:694249..695611 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
GO:0006427histidyl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004821histidine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR006195aa-tRNA-synth_II
IPR004516HisRS/HisZ
IPR015807His-tRNA-ligase
IPR004154Anticodon-bd
Homology
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|585109261|gb|EWM27084.1| (histidyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1130.16 bits (2922), Expect = 0.000e+0
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0
Query:    1 MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVNRS 553
            MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVNRS
Sbjct:    1 MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVNRS 553          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|585109260|gb|EWM27083.1| (histidyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1123.23 bits (2904), Expect = 0.000e+0
Identity = 552/553 (99.82%), Postives = 552/553 (99.82%), Query Frame = 0
Query:    1 MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVNRS 553
            MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKN RETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVNRS
Sbjct:    1 MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKN-RETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVNRS 552          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|551679576|ref|XP_005842540.1| (hypothetical protein GUITHDRAFT_193369 [Guillardia theta CCMP2712] >gi|428186710|gb|EKX55560.1| hypothetical protein GUITHDRAFT_193369 [Guillardia theta CCMP2712])

HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 286/473 (60.47%), Postives = 365/473 (77.17%), Query Frame = 0
Query:   69 STKSRQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLG-LDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTT 540
            S +S +  S++ +  ++G R SAAVAQ    S+E    ++ KLDL PP+GTRDFYPEDMR R+WLF  W+ VAR H FEEYDAPVLESE+L++RKAGEEVT+QLYNFEDKG RRV+LRPEMTPSLARMVMA+   L +PVKWFS PQCWRYERMTRGRRREHYQWNMD+WGV G+EAEAELLSAI TFFKRVG+T++DVGIKV+SR VL+EVL A+ VP  KF+ATCVLVDKLEK+ L+ I+G++  LGL + ++ +L+  +  +D  +LE  +G  S ALAQL+QL EYA AY F +WL+ DASVVRGLAYYTG+VFE FDRKGELRAICGGGRYD+LL TFGGE LPAVGFGFGDAVI ELL+ + L+P+     +D +VF +   +   A   +  +R+  ++ DL LE +K KWA KHA+RLGA+++VI+G +E+A   V+VK +A G+Q  V ++ +  +I+    ++
Sbjct:   40 SRQSTRSFSVSMSGTSQG-RASAAVAQ----SKEKSTGKKEKLDLKPPKGTRDFYPEDMRMRNWLFGHWKDVARLHGFEEYDAPVLESEELYIRKAGEEVTQQLYNFEDKGERRVSLRPEMTPSLARMVMARGKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVPGIEAEAELLSAIVTFFKRVGITSQDVGIKVNSRAVLSEVLTAMGVPADKFAATCVLVDKLEKVKLDDIRGEMQELGLTDEIITKLVATLSIKDLDALEQTLGNGSKALAQLKQLMEYAEAYGFRDWLIFDASVVRGLAYYTGVVFEGFDRKGELRAICGGGRYDELLATFGGEPLPAVGFGFGDAVIAELLKDRNLLPNFDNNKVDVVVFPLSPSVYASAAAVSGVVRSKSISSDLVLEDKKMKWAFKHAERLGASHLVIIGEDEIAKGIVQVKNLAKGEQVEVEVSKVSDFIAEQLASS 507          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|219130142|ref|XP_002185231.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403410|gb|EEC43363.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 285/469 (60.77%), Postives = 357/469 (76.12%), Query Frame = 0
Query:   72 SRQHISITANAAAEGSRGSAAVA-QDL--KNSRETQKERQGK--LDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSL-SLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWIS 534
            SR   ++ A+  + G R S AV  Q+L  K +++   +++G+  LD NPP+GTRDFYP+DMR R+WLF+ WR VA+   F EYDAPVLESE L+VRKAGEEVT QLYNF DKG R VALRPEMTPSLARMVMA++ GL MP+KW+S PQCWRYERMTRGRRREH+QWNMDVWGV+G EAEAEL++A+ TFF+ VGLTAEDVGIKV+SR V+ EVL +L +P+ KF+ TCVLVDKLEK+P+EAIQGDL  LGL+ SVV +LLDV+ ++   +L+  +G  S A+ +L Q      AYN + W++ DASVVRGLAYYTGIVFEAFDR+GELRAI GGGRYDKLLETFGG   PA GFGFGDAVI+ELL+ + ++PS  S G+D +VFAM   L   A+  A+ LR AG +VD+ LE +K KW  KHADR+GA Y V+VG +E     V +K+++ G Q  V I +L +W+S
Sbjct:   32 SRTSFALQASKPSGGGRVSGAVQDQNLLDKTTKQDSPQQKGRPQLDTNPPKGTRDFYPQDMRLRTWLFDHWRAVAKSFGFSEYDAPVLESEALYVRKAGEEVTTQLYNFVDKGDRAVALRPEMTPSLARMVMAQKGGLPMPLKWYSIPQCWRYERMTRGRRREHFQWNMDVWGVAGPEAEAELMAAMVTFFENVGLTAEDVGIKVNSRLVIGEVLDSLGIPEEKFAVTCVLVDKLEKVPIEAIQGDLEELGLDRSVVEKLLDVLTNKSLDALKGTLGEDSQAVKELSQFMTLCEAYNIQNWILFDASVVRGLAYYTGIVFEAFDRRGELRAIAGGGRYDKLLETFGGVQTPAAGFGFGDAVIVELLKERDVLPSFESTGVDTVVFAMNQDLYAPAVGVASVLRKAGQSVDVVLEGKKLKWVFKHADRIGAKYCVVVGADEYLNGEVAIKDLSGGAQKSVKIDDLSNWVS 500          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|1072236703|gb|OEU21431.1| (histidyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 285/471 (60.51%), Postives = 347/471 (73.67%), Query Frame = 0
Query:   75 HISITAN-------AAAEGSRGSAAVAQD---LKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSL-SLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEA-RKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWI 533
            H SI+ N           G R SA+V QD   L  +   +K++  KLD NPP+GTRDFYPEDMR R+WLF+ WR VA+ + F EYDAPVLESE LF RKAGEEVT+QLYNF DKG R VALRPEMTPSLARMVMAK+ G+ +P+KWFS PQCWRYERMTRGRRREHYQWNMD+WGV+G EA+AELLSA+ TFFK VGLT++DVGIKV+SR V+ EVL  L +P+ KF+ATCVLVDKLEK+PL+AIQGDL  +GL+ SVV +L  V+       ++  +G  S A+ Q+  L +  + Y  E+W++ DASVVRGLAYYTG+VFEAFDRKG LRAI GGGRYDKLLETFGG+  PA GFGFGDAVI+ELL+ + L+PS  S G+D +VFA    L   AI  AT LR AG TV+L LE  +K+KW  KHADRLGA YV I+G EE     V +K +  G+Q  +++  L  W+
Sbjct:    4 HQSISTNLDTIENSNGGGGGRVSASV-QDKNVLDKTNGKKKQKVTKLDTNPPKGTRDFYPEDMRLRNWLFDQWRDVAKTYGFSEYDAPVLESEALFTRKAGEEVTQQLYNFVDKGDRNVALRPEMTPSLARMVMAKKGGIPLPLKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVAGEEADAELLSAMVTFFKSVGLTSDDVGIKVNSRLVIGEVLTELGIPEEKFAATCVLVDKLEKVPLDAIQGDLEEIGLDRSVVEKLTKVLTVDSIDGIKDVLGEDSEAVQQISNLMDLCKTYEIEDWIIFDASVVRGLAYYTGVVFEAFDRKGVLRAIAGGGRYDKLLETFGGDPTPAAGFGFGDAVIVELLKDRDLLPSFASTGIDTVVFAQGPDLYNTAISVATKLRQAGQTVELVLEKNKKSKWVFKHADRLGAKYVAIIGSEEFENEQVAIKNLQDGEQSKISMNELSKWV 473          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|224000828|ref|XP_002290086.1| (histidyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >gi|220973508|gb|EED91838.1| histidyl-trna synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 288/494 (58.30%), Postives = 348/494 (70.45%), Query Frame = 0
Query:   47 RQMLSGIGPLLRRKSFIIHPATSTKS--RQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGK-----LDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSL-SLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESW 532
            R+ ++ +   L   S I  P  S++S      S+       G   ++   +DL +   T            LD NPP+GTRDFYP DMR R+WLF  WR VA  + F EYDAPVLESE L+ RKAGEEVT+QLYNF DKG R VALRPEMTPSLARMVMAK+ GL +P+KWFS PQCWRYERMTRGRRREHYQWNMD+WGV G+EAEAELLSA+  FFKRVGLT+EDVGIKV+SRGV+ EVL  L VP+ KF+ATCVLVDKLEK+PL+AIQG+L  LGLE+S + +L  V+ +    S+   +   S A+ QL QLF+   AY   +W++ DASVVRGLAYYTGIVFEAFDRKG LRAI GGGRYDKLLETFGGE  PA GFGFGDAVI+ELL+ + ++PS    G D +VFAM   L G+A++ A++LR  G +VDL LE +K KW  KHA R  A Y VIV  +E     V VK++A G+Q  V I  L+SW
Sbjct:    8 RRAITAVAFQLSSTSTIRIPTLSSRSIVTSSTSLYVEGGVGGRVAASVTDKDLLSKTTTDNNTNSSPPKVALDTNPPKGTRDFYPPDMRLRTWLFSQWRIVASLYGFSEYDAPVLESESLYTRKAGEEVTQQLYNFVDKGDRNVALRPEMTPSLARMVMAKKGGLPLPLKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVDGIEAEAELLSAMVMFFKRVGLTSEDVGIKVNSRGVIGEVLKELGVPEEKFAATCVLVDKLEKVPLDAIQGELEELGLEKSTIEKLTSVLTNTSIESISAVLPPGSDAVKQLSQLFKLCEAYGIADWILFDASVVRGLAYYTGIVFEAFDRKGVLRAIAGGGRYDKLLETFGGEPTPAAGFGFGDAVIVELLKERDVLPSFEGSGFDTVVFAMSEDLFGVAVQVASTLRQNGQSVDLILENKKPKWVFKHASRNEAKYCVIVAGDEYKNGEVSVKDLALGEQMSVKIDALDSW 501          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|551679578|ref|XP_005842541.1| (histidyl-tRNA synthetase [Guillardia theta CCMP2712] >gi|428186711|gb|EKX55561.1| histidyl-tRNA synthetase [Guillardia theta CCMP2712])

HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 279/472 (59.11%), Postives = 349/472 (73.94%), Query Frame = 0
Query:   69 STKSRQHISITANAAAEGSRGSAAVAQDLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTT 540
            S +S +  S++ +  ++G R SAAVAQ    S+E    ++ KLDL PP+GTRDFYPEDMR R+WLF  W+ VAR H FEEYDAPVLESE+L++RKAGEEVT+QLYNFEDKG RRV+LRPEMTPSLARMVMA+   L +PVKWFS PQCWRYERMTRGRRREHYQWNMD+WGV G+EAEAELLSAI TFFKRVG+T++DVGIKV+SR VL+EVL A+ VP  KF+ATCVLVDKLEK+ L+ I+G++  LGL + ++ +L+  +  +D  +LE  +G  S ALAQL+QL EYA AY F +WL+ DASVVRGLAYYTG+VFE FDRKGELRAICGGGRYD+LL TFGGE LPAVGFGFGDAVI ELL+ + L+P+                                  D   E +K KWA KHA+RLGA+++VI+G +E+A   V+VK +A G+Q  V ++ +  +I+    ++
Sbjct:    3 SRQSTRSFSVSMSGTSQG-RASAAVAQ----SKEKSTGKKEKLDLKPPKGTRDFYPEDMRMRNWLFGHWKDVARLHGFEEYDAPVLESEELYIRKAGEEVTQQLYNFEDKGERRVSLRPEMTPSLARMVMARGKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVPGIEAEAELLSAIVTFFKRVGITSQDVGIKVNSRAVLSEVLTAMGVPADKFAATCVLVDKLEKVKLDDIRGEMQELGLTDEIITKLVATLSIKDLDALEQTLGNGSKALAQLKQLMEYAEAYGFRDWLIFDASVVRGLAYYTGVVFEGFDRKGELRAICGGGRYDELLATFGGEPLPAVGFGFGDAVIAELLKDRNLLPNF---------------------------------DNNKEDKKMKWAFKHAERLGASHLVIIGEDEIAKGIVQVKNLAKGEQVEVEVSKVSDFIAEQLASS 436          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|397640339|gb|EJK74067.1| (hypothetical protein THAOC_04281 [Thalassiosira oceanica])

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 283/472 (59.96%), Postives = 343/472 (72.67%), Query Frame = 0
Query:   84 AEGSRGSAAVA-QDLKNSRETQKERQGK--LDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLE-------------------KLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLS-LGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESW 532
             E  R SAAVA +DL +   ++K  + K  LD NPP+GTRDFYP DMR R+WLF  WR VA  + F EYDAPVLESE L+ RKAGEEVT+QLYNF DKG R VALRPEMTPSLARMVMAK+ GL +P+KWFS PQCWRYERMTRGRRREH+QWNMD+WGV+G+EAEAELLSA+ TFFK VGLT+EDVGIK++SRGV+ EVL  L VP+ KF+ATCVLVDKLE                   K+P+ AIQG+L  LGLE S + +L DV+ +    S+   +   S A+ +L QLFE  +AY  E+W++ DASVVRGLAYYTG+VFEAFDRKG LRAI GGGRYDKLLETFGG+  PA GFGFGDAVI+ELL+ + ++P+    G D +VFAM + L G+AI  A++LRA G +VDL LEA+KTKW  KHA R  A + VIV   E     V +K+++ G+Q  V I  L  W
Sbjct:   47 GENGRSSAAVADKDLLSKTGSEKNNRAKVALDTNPPKGTRDFYPPDMRLRTWLFNQWRDVAALYGFSEYDAPVLESESLYTRKAGEEVTQQLYNFVDKGDRAVALRPEMTPSLARMVMAKKGGLNLPLKWFSIPQCWRYERMTRGRRREHFQWNMDIWGVNGIEAEAELLSAMVTFFKNVGLTSEDVGIKLNSRGVIGEVLTELGVPEEKFAATCVLVDKLEKVRRYFTDVICCRHSQEKFKVPIAAIQGELEELGLETSTIEKLTDVLTNTSIESISAVLPKDSVAVKELTQLFELCKAYGIEDWVMFDASVVRGLAYYTGVVFEAFDRKGVLRAIAGGGRYDKLLETFGGDPTPAAGFGFGDAVIVELLKERDVLPTFEGSGYDTVVFAMNSDLYGVAINVASTLRAEGQSVDLILEAKKTKWVFKHASRNEAKHCVIVAGNEYENGEVSIKDLSIGEQKTVKIDALSDW 518          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|298714373|emb|CBJ27430.1| (Histidyl-tRNA Synthetase (C-terminal region) Histidyl-tRNA Synthetase (N-terminal region) [Ectocarpus siliculosus])

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 284/435 (65.29%), Postives = 332/435 (76.32%), Query Frame = 0
Query:  110 KLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPS-LSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPE 543
            KLDL PP+GTRD +PEDMR R+WLF  WR VA    FEEYDAPVLESE L+ RK+GEEVT+QLY FEDKGGRRV+LRPEMTPSLARMVMAKR  L +PVKWFS PQCWRYERMTRGRRREHYQWNMD+WGVSGV AEAELL A+ TFF+RVGL AEDVGI+V+SRGVL EVL +L VP  K +ATCVLVDKL+K+PLEA+ GDL  LGLEE+ V+RLL+V++ RD   +E  +G +S A  +LR+LF  A +Y   +WLVLD SVVRGLAYYTG VFEAFDR+G+LRAI GGGRYD LLE+FGGEALPA GFGFGDAVI+ELL  +GL+P     G  A+VF  +  LQG A   A SLR  G++VDL L+ RKTK   KHA R+GATYVV+V P E     V VK++ T  Q  + +  + S I A     S E
Sbjct:  138 KLDLKPPKGTRDVFPEDMRLRNWLFGHWRGVASSFGFEEYDAPVLESESLYTRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVSGVAAEAELLGAMVTFFERVGLRAEDVGIRVNSRGVLTEVLHSLGVPGDKHTATCVLVDKLDKMPLEAVAGDLAELGLEETSVKRLLEVMELRDMGGVEAFLGKESPAAEELRKLFALAESYGISDWLVLDCSVVRGLAYYTGTVFEAFDRRGKLRAIAGGGRYDALLESFGGEALPAAGFGFGDAVIVELLSDRGLLPKEAGPGATAVVFGWDDELQGAATEVAASLRREGISVDLVLQPRKTKANFKHATRVGATYVVMVAPSEWEAGKVSVKDLRTSDQKELPVGEVASHILAGDVAISKE 572          
BLAST of EWM27084.1 vs. NCBI_GenBank
Match: gi|1210526933|dbj|GAX14260.1| (histidyl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 293/482 (60.79%), Postives = 358/482 (74.27%), Query Frame = 0
Query:   59 RKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQ----DLKNSRETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSL-SLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISA 535
            R S    PAT+   R +  +T   A+   R S AV      D  N+ ET++    KLD NPP+GTRDFYPEDMR R+WLF+ WR  AR   F EYDAPVLESE L+ RKAGEEVT+QLYNF DKG R V LRPEMTPSLARMVMAK+  L +P KWFS PQCWRYERMTRGRRREH+QWNMD+WGV+G EAEAEL++A+  FF+ VGLT+EDVGIKV+SR V+ EVL  L +P  KF+ATCVLVDKLEK+P++AIQG+L  LGL+ SVV +LL+V+ ++   SL   +GA S A+ QL +      AY  ++W++LDASVVRGLAYYTGIVFEAFDRKG+LRAI GGGRYDKLLETFGG+++PA GFGFGDAVI+ELL+ + ++PS    G+D +VFAM   L  +AI+AAT+LR AG +VDL LEA+K+KW  KHADRLGA Y +IVG  E     V VK++  GQQ  V I  L SW ++
Sbjct:   17 RCSTAFTPATT---RAYTKLTTLLASSNGRISNAVQDKSLLDKTNTDETRRVVSEKLDTNPPKGTRDFYPEDMRLRNWLFDQWRDTARISGFVEYDAPVLESEALYTRKAGEEVTQQLYNFVDKGERAVTLRPEMTPSLARMVMAKKGALPLPFKWFSIPQCWRYERMTRGRRREHFQWNMDIWGVAGEEAEAELIAAMVRFFEGVGLTSEDVGIKVNSRLVIGEVLNELGIPPEKFAATCVLVDKLEKVPVDAIQGELEELGLDRSVVEKLLNVLTNKSIESLRETLGADSKAVLQLEKFMSLCDAYGIQDWIILDASVVRGLAYYTGIVFEAFDRKGQLRAIAGGGRYDKLLETFGGDSIPAAGFGFGDAVIVELLKERNILPSFEESGIDTVVFAMNEKLFPVAIQAATALRKAGQSVDLILEAKKSKWVFKHADRLGAKYCLIVGESEYENGEVAVKDLKLGQQANVKIEELVSWATS 495          
The following BLAST results are available for this feature:
BLAST of EWM27084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109261|gb|EWM27084.1|0.000e+0100.00histidyl-trna synthetase [Nannochloropsis gaditana... [more]
gi|585109260|gb|EWM27083.1|0.000e+099.82histidyl-trna synthetase [Nannochloropsis gaditana... [more]
gi|551679576|ref|XP_005842540.1|0.000e+060.47hypothetical protein GUITHDRAFT_193369 [Guillardia... [more]
gi|219130142|ref|XP_002185231.1|0.000e+060.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072236703|gb|OEU21431.1|0.000e+060.51histidyl-tRNA synthetase [Fragilariopsis cylindrus... [more]
gi|224000828|ref|XP_002290086.1|0.000e+058.30histidyl-trna synthetase [Thalassiosira pseudonana... [more]
gi|551679578|ref|XP_005842541.1|0.000e+059.11histidyl-tRNA synthetase [Guillardia theta CCMP271... [more]
gi|397640339|gb|EJK74067.1|0.000e+059.96hypothetical protein THAOC_04281 [Thalassiosira oc... [more]
gi|298714373|emb|CBJ27430.1|0.000e+065.29Histidyl-tRNA Synthetase (C-terminal region) Histi... [more]
gi|1210526933|dbj|GAX14260.1|0.000e+060.79histidyl-tRNA synthetase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3558rna3558Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications